Structural determination of C-glycosylflavones by mass spectrometry of their permethyl ethers: O-glycosyl-6-C-glycosylflavones

Permethylated O-glycosyl-C-glycosylflavones give well defined MS including an important molecular peak. Permethyl 6-C-glycosylflavones O-glycosylated on a phenolic hydroxyl group are easily distinguished from the isomeric permethyl 6-C-diholosylflavones. In both types, the position of the O-glycosidic bond can be deduced from the MS, eventually after acid hydrolysis. 2″-O-glycosyl-6-C-glycosylflavones can be differentiated from their 8-C isomers.     

Structural determination of C-glycosylflavones by mass spectrometry of their permethyl ethers

Permethylated C-glycosylflavones give well defined MS, including in all cases an important molecular peak. The observed fragmentations are characteristic for the nature and position of the sugar. The 6-C and 8-C glycosylated derivatives are clearly differentiated. In dissymmetrical 6,8-di-C-glycosylflavones, the natures of the sugar in both the 6- and 8- positions can be determined. The structures of several natural compounds are discussed.     

Fragmentation pattern of permethyl 6-C-glycosylflavones in electron impact mass spectrometry

A mass spectral fragmentation pattern of permethyl 6-C-glycosylflavones is proposed from the MS data of permethyl derivatives mono-O-deuteriomethylated in the 2″-, 3″-, 4″- or 6″-positions. The synthesis of these compounds via O″-glycosyl-6-C-glucosylflavones is described.     

Identification of the glycosylflavones of Ephedra and Briza by mass spectrometry of their permethyl ethers

The application of permethylation and mass spectrometry to several glycoflavone samples homogenous by paper chromatography showed them in most cases to be mixtures of closely related isomers. A sample isolated from Ephedra andina leaves was identified by these means as a mixture of vicenin-1 and -2. Application of the procedure to a sample from Briza media thought to be vitexin showed it to be 8-C-galactosylapigenin and this was confirmed by co-chromatography with a synthetic specimen; an acylated 8-C-galactosylapigenin was also detected in the same source.     

New 6-hydroxyflavonoids and their methyl ethers and glycosides from Neurolaena oaxacana

Six new and nine known flavonoids were obtained from Neurolaena oaxacana. The known flavonoids are 6-hydroxykaempferol 3,7-dimethyl ether, quercetagetin 3,7-dimethyl ether, quercetin 3-methyl ether, axillarin, nodifloretin, 6-hydroxyluteolin 7-glucoside, kaempferol 3-glucoside, quercetagetin 7-glucoside and patulitrin. The new compounds are 6-hydroxykaempferol 3-methyl ether, quercetagetin 3,7-dimethyl ether 6-galactoside, quercetagetin 3-methyl ether 7-glucoside, the 6- and 7-glucosides of 6-hydroxykaempferol 3-methyl ether and quercetagetin 3-methyl ether 7-sulfate.     

Identification of natural tricetin-derived C-glycosides through synthesis

C-Glycosylation of 5,7-dihydroxy-3′,4′,5′-trimethoxyflavone was carried out with acetobromo-α-d-glucose, -α-d-galactose, -α-d-xylose, -β-l-arabinose and -αt-L-rhamnose. The respective 6-C-glycosides and 6, 8-di-C-glycosides (excepted for galactose) were isolated and permethylated. MS and TLC comparison confirmed the proposed structures of five natural tricetin-derived C-glycosides.     

Structural determination of N-linked glycans by matrix-assisted laser desorption/ionization and electrospray ionization mass spectrometry

This paper reviews methods for the analysis of N-linked glycans by mass spectrometry with emphasis on studies conducted at the Oxford Glycobiology Institute. Topics covered are the release of glycans from sodium dodecyl sulphate-polyacrylamide gel electrophoresis gels, their purification for analysis by mass spectrometry, methods based on matrix-assisted laser desorption/ionization (MALDI) and electrospray ionization for producing fragment ions, and details of their fragmentation. MALDI mass spectrometry provided a rapid method for profiling neutral N-linked glycans as their [M + Na](+) ions which could be fragmented by collision-induced decomposition to give spectra containing both glycosidic and cross-ring fragments. Electrospray ionization mass spectrometry was more versatile in that it was relatively easy to change the type of ion that was formed and, furthermore, unlike MALDI, electrospray did not cause extensive loss of sialic acids from sialylated glycans. Negative ions formed by addition of anions such as chloride and, particularly, nitrate, to the electrospray solvent were stable and enabled singly charged ions to be obtained from larger glycans than was possible in positive ion mode. Fragmentation of negative ions followed specific pathways that defined structural details of the glycans that were difficult to obtain by classical methods such as exoglycosidase digestion.     

Identification of hydroxylated chlorodibenzo-p-dioxins, chlorodibenzofurans, chlorodiphenyl ethers and chloronaphthalenes as their methyl ethers by gas chromatography mass spectrometry

The methyl ethers of a number of hydroxylated (poly)chlorodibenzo-p-dioxins, chlorodibenzofurans, chlorodiphenyl ethers and chloronaphthalenes, representing all different hydroxy substitutions, were synthesized and their mass spectra investigated. With the exception of the methoxy derivatives of the chlorodibenzofurans, it appeared that the mass fragmentation patterns of the structural isomers of each class of compounds were very specific and allowed unambiguous assignment of the position of the methoxy group in the molecule. The different fragmentation patterns can be explained in terms of plausible mechanisms resulting in stable charge delocalized (oxonium) ions. Because of its diagnostic value, this method is useful in the structure elucidation of hydroxylated metabolites of pure isomers of chlorodibenzo-p-dioxins, chlorodiphenyl ethers and chloronaphthalenes.     

8-C-Prenylflavonoids from the seed of Tephrosia bracteolata

Four flavonoids in the seeds of Tephrosia bracteolata were identified as the flavanone obovatin methyl ether and the flavones isopongaflavone, trans-tephrostachin and trans-anhydrotephrostachin.     

Determination of O-glycosidic bond position in 6-C-glycosylglucosylflavones by mass spectrometry

2″,3″,4″ and 6″-O-glycosides of 6-C-glucosylflavones can be differentiated by the MS of the hydrolysis products of their permethyl ethers.     

Sequence determination of peptides by mass spectrometry: methods for combining "wet" separation techniques with mass spectrometry.

Methods are described that allow the combination of established techniques for peptide separation, paper chromatography and electrophoresis, with mass spectrometry. The development of these methods is part of an ongoing effort in the search for a methodology for the systematic utilization of mass spectrometry for the elucidation of primary structure of proteins and peptides. Peptides and amino acids are detected on chromatograms by conversion to covalent derivatives that are also suitable for mass spectrometry. The most useful reagents for detection and derization of peptides reported here are dansyl chloride, N,N-dimethylaminobenzaldehyde, N,N-dimethylaminocinnamaldehyde, and N-hydroxysuccinimido β-naphthoate. Detection limits and mass spectra for some of these derivatives are reported.     

The determination of aldonic acids and 2-C-methylaldonic acids

Specific, spectrophotometric methods are described for the determination of glyoxylic acid from aldonic acids and pyruvic acid from 2-C-methylaldonic acids, which allow their determination in admixture. Confirmation of the classification of these aldonic acids is obtained by ion-exchange chromatography of the products of periodate oxidation.     

Structural analysis of biologically active peptides and recombinant proteins and their modified counterparts by mass spectrometry

The structural characterization of the Escherichia coli-expressed human interferon α-2b (rh-IFN α-2b) was carried out by employing the fast atom bombardment (FAB) and plasma desorption (PD) mapping methods. The mass spectral data of the rh-IFN α-2b and the trypsin-generated peptide mixture allowed rapid and facile confirmation of the cDNA-derived sequence and determination of the existing disulfide pattern in the protein molecule. The same PD/FAB mapping approach was successfully employed in the structural determination of the iodination reaction product of rh-IFN α-2b and the potent vasoconstrictor peptide endothelin.     

Simultaneous determination of oxprenolol and 2H6-labelled oxprenolol in human plasma by gas chromatography/mass spectrometry

A gas chromatographic/mass spectrometric method for the specific determination of oxprenolol and 2H6-labelled oxprenolol when both are present in the same sample is described. After addition of 13C3-labelled oxprenolol as internal standard, plasma is alkalized and extracted by a mixture of dichloromethane and diethyl ether. The residue following evaporation of the organic phase is derivatized with heptafluorobutyric anhydride. Negative ion detection with N2O as reagent gas is used for the measurements at m/z 488, 491 and 494 for oxprenolol, the 13C3-labelled internal standard and 2H6-labelled oxprenolol, respectively. The precision and accuracy of the analytical method were investigated using samples containing both unlabelled and 2H6-labelled oxprenolol. The overall mean recovery (% +/- SD, n = 70) in the concentration range 20-1500 nmol l-1 (around 6-450 ng ml-1 of the hydrochloride salts) was 100.6 +/- 3.3 and 101.0 +/- 3.5 for oxprenolol and 2H6-labelled oxprenolol, respectively. The limit of quantification was around 20 nmol l-1 for both compounds.     

6-Hydroxy- and 6-methoxyflavonoids from Neurolaena lobata and N. macrocephala

Twelve flavonoids including one new sulfate were isolated from Neurolaena lobata, and six known flavonoids were obtained from N. macrocephala. The new compound isolated from N. lobata is 6-hydroxykaempferol 3-methyl ether 7-sulfate, and the known flavonoids are 6-hydroxykaempferol 3,7-di-dimethyl ether, 6-hydroxykaempferol, 3-methyl ether 7-glucoside, 6-hydroxykaempferol 7-glucoside, quercetagetin and its 7-glucoside, quercetagetin 3,6- and 3,7-dimethyl ethers, quercetagetin 3-methyl ether 7-glucoside and 7-sulfate, 6-hydroxyluteolin 3′-methyl ether and 6-hydroxyluteolin 7-glucoside. The known flavonoids identified from N. macrocephala are quercetagetin 3,6- and 3, 7-dimethyl ethers, quercetagetin 6-methyl ether 7-glucoside, quercetagetin 3,6-dimethyl ether 7-glucoside, quercetagetin 7-glucoside and quercetagetin 3-methyl ether 7-sulfate.     

Flavonoid methyl ethers on the external leaf surface of Larrea tridentata and L. Divaricata

The external phenolic resin on the leaves of Larrea tridentata contains eighteen flavone and flavonol aglycones (mostly as methyl ethers), one dihydroflavonol and two lignans (including nordihydroguaiaretic acid). Except for a few isolated 2n populations which exhibited minor differences, a single chemical type was observed for all three ploidy levels (2n, 4n and 6n) in the North American L. tridentata suggesting an autoploid origin for the tetraploid and hexaploid races. The resin chemistry of the North American taxon was most similar to that of the Argentinian diploid L. divaricata, although the resin of the latter taxon did not contain the three 8-hydroxyflavonols; however, 8-hydroxyflavonol aglycones were detected in Peruvian populations of L. divaricata.     

The carbohydrate of human thrombin: Structural analysis of glycoprotein oligosaccharides by mass spectrometry

The carbohydrate structure of human thrombin has been determined by direct probe mass spectrometry of the oligosaccharides released by trifluoroacetolysis from the asialo glycoprotein. The free oligosaccharides were studied as permethylated and N-trifluoroacetylated oligosaccharide alditols. The structure was confirmed by sequential exoglycosidase digestion of intact thrombin and sugar and methylation analysis of the oligosaccharides by gas-liquid chromatography-mass spectrometry. The results indicate the following structure:

with Fuc present on only about 50% of the oligosaccharides.     

Types of sesquiterpene-coumarin ethers from Achillea ochroleuca and Artemisia tripartita

In addition to known derivatives, four new sesquiterpene-coumarin ethers were isolated from the roots of Achillea ochroleuca and Artemisia tripartita and identified by ¹H and ¹³C NMR spectroscopy, including lanthanide induced shifts. The new compounds are isofraxidin derived ethers which differ from the previously described derivatives by ring cleavage and methyl migration within the terpenoid unit. The chemosystematic importance of sesquiterpene-coumarin ether accumulation within the two genera is briefly discussed.     

Protein-nucleic acid complexes and the role of mass spectrometry in their structure determination

Mass spectrometry is now established as a powerful tool for the study of the stoichiometry, interactions, dynamics, and subunit architecture of large protein assemblies and their subcomplexes. Recent evidence has suggested that the 3D structure of protein complexes can be maintained intact in the gas phase, highlighting the potential of ion mobility to contribute to structural biology. A key challenge is to integrate the compositional and structural information from ion mobility mass spectrometry with molecular modelling approaches to produce 3D models of intact protein complexes. In this review, we focus on the mass spectrometry of protein-nucleic acid assemblies with particular attention to the application of ion mobility, an emerging technique in structural studies. We also discuss the challenges that lie ahead for the full integration of ion mobility mass spectrometry with structural biology.