Allometric growth of the trunk leads to the rostral shift of the pelvic fin in teleost fishes

The pelvic fin position among teleost fishes has shifted rostrally during evolution, resulting in diversification of both behavior and habitat. We explored the developmental basis for the rostral shift in pelvic fin position in teleost fishes using zebrafish (abdominal pelvic fins) and Nile tilapia (thoracic pelvic fins). Cell fate mapping experiments revealed that changes in the distribution of lateral plate mesodermal cells accompany the trunk-tail protrusion. Presumptive pelvic fin cells are originally located at the body wall adjacent to the anterior limit of hoxc10a expression in the spinal cord, and their position shifts rostrally as the trunk grows. We then showed that the differences in pelvic fin position between zebrafish and Nile tilapia were not due to changes in expression or function of gdf11. We also found that hox-independent motoneurons located above the pelvic fins innervate into the pelvic musculature. Our results suggest that there is a common mechanism among teleosts and tetrapods that controls paired appendage positioning via gdf11, but in teleost fishes the position of prospective pelvic fin cells on the yolk surface shifts as the trunk grows. In addition, teleost motoneurons, which lack lateral motor columns, innervate the pelvic fins in a manner independent of the rostral-caudal patterns of hox expression in the spinal cord.     

The phylogenetic significance of bone types in euteleost fishes

The paradentary is a small, sometimes dentigerous element in the lower jaw of some atherinomorph neoteleost fishes. Identification of the paradentary as a neomorphic, perichondrally ossified bone prompted re-examination of theories of the association of bone and teeth in teleost fishes. Teeth on a chondral lower jaw bone might be explained simply by epidermal-mesodermal interactions. Since the work of Kolliker in 1859, it has been known that there are two basic types of bone in teleost fishes: cellular bone, characterized by a matrix that has enclosed osteoblasts or osteocytes; and acellular bone, characterized by a relatively featureless matrix that lacks these bone-forming cells. Cellular bone is typical of lower teleosts, whereas acellular bone is typical of higher teleosts. Ontogenetic data indicate that acellular bone is derived relative to cellular bone. Even though identification of cellular and acellular bone can be made readily with histological preparations, acellular bone has been used infrequently as a character in analyses of teleost phylogeny. Acellular bone is considered here to be a derived character within teleost fishes. It is found in all Neoteleostei as well as some, but not all Salmoniformes. Independent of studies of bone, derived types of teeth in teleosts have been described in terms of their failure to become completely mineralized. Acellular bone and teeth of higher teleosts share several properties, including a large fraction of collagen. Teleosts lack a parathyroid gland; bone type is critical to the mechanism of calcium regulation. It is proposed that the character of acellular bone be incorporated into phylogenetic analyses of teleost fishes by correlating it with derived types of tooth structure.     

The effects of opercular linkage disruption on prey-capture kinematics in the teleost fish Sarotherodon melanotheron

The kinematics of prey capture in blackchin tilapia (Sarotherodon melanotheron) subjected to three experimental treatments (control, anesthetization, and opercular linkage disruption) were analyzed using high-speed video to explore the role of the opercular four-bar linkage in depressing the lower jaw in teleost fishes. A series of two-way mixed model analyses of variance (random effects=fish; fixed effects=treatment) revealed that maximum gape, lower jaw angle, gape cycle, and time to lower jaw depression differed among treatments. Tukey post-hoc comparisons revealed that the opercular linkage disruption treatment differed from the control and anesthetization treatments, suggesting that severing the opercular linkage affected the ability of fish to depress the lower jaw. We hypothesize that although the opercular four-bar linkage system may not be the only linkage mechanism involved in depressing the lower jaw, it plays a very important role in opening the mouth during feeding in teleost fishes.     

Conservation and divergence of Bmp2a, Bmp2b, and Bmp4 expression patterns within and between dentitions of teleost fishes

The diversity of tooth location in teleost fishes provides an excellent system for comparing genetic divergence between teeth in different species (phylogenetic homologs) with divergence between teeth within one species (iterative homologs). We have chosen to examine the expression of three members of the bone morphogenetic protein (Bmp) family because they are known to play multiple roles in tooth development and evolution in tetrapod vertebrates. We characterized expression of Bmp2a, Bmp2b, and Bmp4 during the development of oral and pharyngeal dentitions in three species of teleost fishes, the zebrafish (Danio rerio), Mexican tetra (Astyanax mexicanus), and Japanese medaka (Oryzias latipes). We found that expression in teleosts is generally highly conserved, with minor differences found among both iteratively homologous and phylogenetically homologous teeth. Expression of orthologous genes differs in several ways between the teeth of teleost fishes and those of the mouse, but between these vertebrate groups the summed expression pattern of Bmp genes is highly conserved. Significantly, the toothless oral region of the zebrafish lacks Bmp expression domains found in teleosts with oral teeth, implicating these genes in evolutionary tooth loss. We conclude that Bmp expression has been largely conserved in vertebrate tooth development over evolutionary time, and that loss of Bmp expression is correlated with region-specific loss of the dentition in a major group of fishes.     

Nitric oxide-ergic organization of medullar cranial nuclei in teleost fishes

Traditional neuromorphological and NADPH-diaphorase methods were used to study and compare the topography and localization of medullar nuclei NO-ergic neurons in four teleost species: Pholis nebelosis, Hexagramus octogrammus, Carassius carassius and Pholidapus dybowskii. The peculiarity of medullar nuclei organization in teleost fishes consists in the weak topological disconnection of sensor and motor components with pronounced heteromorphism in their structure and the presence of subpopulations in their composition. In the fishes studied, NADPH-diaphorase was found in the trygeminal, octavo-lateral, facial, glossopharingeal and vagal nuclei. The number of NO-ergic neurons in the trygeminal nucleus was marginal and made up 9-14 % of the total cell number. About 40-60 % of NO-ergic cells were found in the octavo-lateral, facial, glossopharingeal and vagal nuclei.     

Evolution of behavior and neural control of the fast-start escape response

The fast-start startle behavior is the primary mechanism of rapid escape in fishes and is a model system for examining neural circuit design and musculoskeletal function. To develop a dataset for evolutionary analysis of the startle response, the kinematics and muscle activity patterns of the fast-start were analyzed for four fish species at key branches in the phylogeny of vertebrates. Three of these species (Polypterus palmas, Lepisosteus osseus, and Amia calva) represent the base of the actinopterygian radiation. A fourth species (Oncorhynchus mykiss) provided data for a species in the central region of the teleost phylogeny. Using these data, we explored the evolution of this behavior within the phylogeny of vertebrates. To test the hypothesis that startle features are evolutionarily conservative, the variability of motor patterns and kinematics in fast-starts was described. Results show that the evolution of the startle behavior in fishes, and more broadly among vertebrates, is not conservative. The fast-start has undergone substantial change in suites of kinematics and electromyogram features, including the presence of either a one- or a two-stage kinematic response and change in the extent of bilateral muscle activity. Comparative methods were used to test the evolutionary hypothesis that changes in motor control are correlated with key differences in the kinematics and behavior of the fast-start. Significant evolutionary correlations were found between several motor pattern and behavioral characters. These results suggest that the startle neural circuit itself is not conservative. By tracing the evolution of motor pattern and kinematics on a phylogeny, it is shown that major changes in the neural circuit of the startle behavior occur at several levels in the phylogeny of vertebrates.     

Comparison of hypoxia-inducible factor-1 alpha in hypoxia-sensitive and hypoxia-tolerant fish species

Levels of oxygen can vary dramatically in aquatic environments. Aquatic organisms, including fishes, have adapted accordingly to survive. As there are both phylogenetically closely related fish species with differing oxygen requirements and distantly related species with similar oxygen requirements, fishes are good candidates for examining oxygen-related functions in vertebrates. We set out to investigate if sequence variation in the hypoxia-inducible factor-1 alpha (HIF-1α) gene is associated with variations in oxygen requirements. Since the teleost HIF-1α sequences available in databases represent a very limited dataset both phylogenetically and with regard to oxygen requirements, we have sequenced the protein coding sequence for HIF-1α from an additional 9 fish species. Our results indicate that the deduced HIF-1α proteins of teleost fishes are somewhat shorter than those of tetrapods. Additionally, the results suggest that tetrapod sequences more closely resemble the ancestral form of the protein than do teleost sequences. No clear signatures which could be associated with the oxygen requirements of the species were found. This study suggests that if species-specific differences in HIF-1α function with regards to oxygen dependence have evolved, they do not occur in the protein coding sequence but at other levels of the HIF-1α pathway.     

Motor Control Across Trophic Strategies: Muscle Activity of Biting and Suction Feeding Fishes

Many fishes use a powerful bite of the oral jaws to captureor tear their prey. This behavior has received less study fromfunctional morphologists and physiologists than suction feeding,and presents an opportunity to examine motor control of fishfeeding across alternative prey-capture strategies. We usedelectromyography to compare muscle activity patterns of thefeeding bite in five teleost fishes representing at least threelineages in which biting has been independently acquired: twoparrotfish (Cetoscarus bicolor and Scarus iseri), a wrasse (Cheilinuschlorourus), and two serrasalmines, a pacu (Piaractus brachypomus)and a piranha (Pygocentrus nattereri). Multivariate analysisindicated that muscle activity patterns differed significantlyamong species, although a four-way ANOVA designed to test fordifferences within a phylogenetic hierarchy revealed that thebiting motor pattern was largely similar for both narrow andbroad phylogenetic comparisons. A comparison of the motor patternsof biting and suction feeding species revealed that biters hadsignificantly shorter durations of the epaxialis and sternohyoideusand significantly longer relative onset times of the epaxialis,adductor mandibulae, and sternohyoideus. Character mapping oftiming variables suggested that short relative onset times areprimitive for suction feeders and that this characteristic isgenerally retained in more advanced species. Despite these differences,all species overlap extensively in multivariate EMG space. Ourresults demonstrate that change in the feeding motor patternhas accompanied morphological and behavioral change in transitionsfrom suction to biting, which suggests that the neuromotor systemhas not acted as a constraint on the evolution of the feedingsystem in fishes.     

Reproductive ecology of Brazilian freshwater fishes

We used metadata on nine reproductive traits of 67 species of Brazilian iteroparous, oviparous, teleost freshwater fishes to test phenotypes associations to discriminate species that only spawn in large rivers (lotic fishes) from those capable to spawn in lentic habitats (lentic fishes). We tested the hypothesis that lotic fishes present spawning migration, shorter spawning season, single spawning, no parental care, free eggs, higher relative fecundity, faster embryogenesis, and larger size, while lentic fishes present no spawning migration, longer spawning season, multiple spawning, parental care, adhesive eggs, lower relative fecundity, slower embryogenesis, and smaller size. Our analyses supported the hypothesis but not all phenotypic associations satisfied it, specifically with regard to lentic fishes or to pairs of phenotypes typical of lentic fishes. We also concluded that spawning in large rivers is a better predictor of bionomic characters than spawning in lentic habitats, and lotic fishes are specialists compared to lentic fishes.     

The nuclear DNA content of diploid and triploid Poeciliopsis and other poeciliid fishes with reference to the evolution of unisexual forms

The nuclear DNA content of all diploid poeciliid fishes known to date ranges from 1.30 to 1.92 pg, and is thus lower than the median amount for fishes in general, and teleost fishes in particular (2.0 pg). As is expected, triploid forms of Poecilia and Poeciliopsis have half again as much nuclear DNA as diploid forms. Unisexual forms of the two genera tend to have slightly less nuclear DNA than the amount expected if compared with their gonochoristic progenitors.     

Evolution and diversity of fish genomes

The ray-finned fishes ('fishes') vary widely in genome size, morphology and adaptations. Teleosts, which comprise approximately 23600 species, constitute >99% of living fishes. The radiation of teleosts has been attributed to a genome duplication event, which is proposed to have occurred in an ancient teleost. But more evidence is required to support the genome-duplication hypothesis and to establish a causal relationship between additional genes and teleost diversity. Fish genomes seem to be 'plastic' in comparison with other vertebrate genomes because genetic changes, such as polyploidization, gene duplications, gain of spliceosomal introns and speciation, are more frequent in fishes.     

Effects of prey type on motor pattern variance in tetraodontiform fishes

It is unclear whether the high variance of electromyographic parameters measured in feeding teleost fishes reflects functionally significant motor variation that is under control of the fish, or functionally insignificant variation characteristic of EMG data. We addressed this issue by examining the effect of three prey, differing in physical characteristics, on the feeding motor pattern in three fishes of the Order Tetraodontiformes: the filefish, Monacanthus hispidus; the triggerfish, Balistes capriscus; and the puffer, Sphoeroides nephelus. EMG recordings were made from subdivisions of the mouth closing adductor mandibulae muscle and the mouth opening levator operculi muscle in four fish from each species feeding on live fiddler crabs, live shrimp, and pieces of cut squid mantle. Analysis of variance was used to test for effects of prey type on the standard deviation of muscle burst duration, burst onset time, and average burst amplitude in the adductor muscles. The filefish exhibited a doubling of standard deviation of burst duration in all muscles when feeding on fiddler crabs; triggerfish showed increased standard deviations in onset times and duration of two muscles when feeding on squid mantle; and the puffer showed no effects of prey on motor variability. The observation that prey type can elicit more than a doubling in the standard deviation of some EMG traits indicates that a large portion of the within-prey type variance is under direct control of the individual fish, suggesting an even greater level of fine motor control in teleost feeding mechanisms than previously recognized.     

The effects of the deep-sea environment on transmembrane signaling

Membrane-associated processes may be particularly susceptible to perturbation by the high hydrostatic pressures and low temperatures of the deep ocean. Transmembrane signaling by guanyl nucleotide binding protein (G protein) coupled receptors (GPCRs) is affected at a number of steps: (1) agonist activation of the GPCR; (2) the interaction of the receptor with the heterotrimeric G protein; (3) the G protein GTPase cycle; and (4) the activation and function of the effector element, adenylyl cyclase. The effects of low temperature and high hydrostatic pressures on the A₁ adenosine receptor–inhibitory G protein (G_i)–adenylyl cyclase signaling complex were examined in teleost fishes from three families, Scorpaenidae, Macrouridae and Moridae. In a comparison of teleost fishes, rat and chicken, species with body temperatures from 1 to 40 °C, at atmospheric pressure, A₁ adenosine receptor agonist binding is conserved at the body temperature of the species. In the marine teleost fishes examined, increased pressure decreases agonist efficacy. There are differences among species in the effects of increased hydrostatic pressure on G protein interactions with receptors, GTP binding to G protein α subunits and the intrinsic GTPase activity of α subunits. Adenylyl cyclase activity and modulation are affected by increased pressure in all the species examined, except Antimora rostrata which was unaffected by pressure changes. At pressures approximating those which the species experience in situ adenylyl cyclase activity retains its sensitivity to modulators. To understand the physiological consequences of impaired cell signaling several prototypical human diseases are discussed.     

Revealing the mechanisms of the rostral shift of pelvic fins among teleost fishes

In teleost fishes, the position of the pelvic fins shift during evolution; this positional shift seems to have diversified their locomotion and feeding behavior, thereby expanding the habitats of these fishes. Thus, such a positional shift of the pelvic fins is one of the significant features of teleost fishes from evolutionary, embryological, and taxonomic viewpoints, but no studies to date have investigated the mechanism for the rostral shift of the pelvic fins from the anal region in teleosts. Examining the fate of the prospective pelvic fin cells of the zebrafish Danio rerio and the Nile tilapia Oreochromis niloticus embryos demonstrates that the prospective pelvic fin cells are originally located near the anus, as seen in tetrapods, but their position shifts with respect to the body trunk after its protrusion from the yolk surface. In this article, we highlight such recent findings and discuss the mechanisms of pelvic fin evolution among teleost fishes.     

The Strategies of Organization of the Fish Plasma Proteome: with and without Albumin

Russian Journal of Marine Biology - Various principles of organization of the blood plasma proteome are considered using the example of teleost fishes, whose lower members have albumin, while the...     

9种硬骨鱼类转座组注释

通过生物信息学手段对9种硬骨鱼转座组进行注释。结果表明9种硬骨鱼类转座组大小和构成差异显著,其转座组含量从高到低分别为斑马鱼、矛尾鱼、青鳉鱼、罗非鱼、花斑剑尾鱼、大西洋鳕鱼、三刺鱼、金娃娃和红鳍东方鲀,转座子含量和基因组大小呈正相关。DNA转座子在硬骨鱼类中具有多样性高和含量差异大的特点(0.50%–38.37%),是硬骨鱼类转座组差异的主要决定因素,其中h AT和Tc/Mariner超家族是硬骨鱼类主要的DNA转座子。RNA转座子在硬骨鱼类中也具有多样性高的特点,其中LINE转座子占硬骨鱼类基因组的0.53%–5.75%,共检测到14个超家族分布,其中L1、L2、RTE和Rex转座子扩增较为明显,LTR转座子除了在斑马鱼和三刺鱼中含量达到5.58%和2.51%,在大多硬骨鱼类基因组中的含量低于2%,在硬骨鱼类中共检测到6个LTR转座子(Copia、DIRS、ERV、Gypsy、Ngaro和Pao)超家族分布,其中扩增最为明显的是Gypsy。而SINE转座子在硬骨鱼类中扩增最弱,仅在斑马鱼和矛尾鱼中分别达到3.28%和5.64%,在其他7个物种中低于1%。SINE中t RNA、5S和MIR三个超家族在部分硬骨鱼类中有一定程度扩增。本研究表明硬骨鱼类转座组具有多样性丰富、差异大的特点,转座组差异与硬骨鱼基因组大小有很强的相关性,转座组是决定硬骨鱼基因组大小的重要因素。     

Adaptive evolution of hepcidin genes in antarctic notothenioid fishes

Hepcidin is a small bioactive peptide with dual roles as an antimicrobial peptide and as the principal hormonal regulator of iron homeostasis in human and mouse. Hepcidin homologs of very similar structures are found in lower vertebrates, all comprise approximately 20-25 amino acids with 8 highly conserved cysteines forming 4 intramolecular disulfide bonds, giving hepcidin a hairpin structure. Hepcidins are particularly diverse in teleost fishes, which may be related to the diversity of aquatic environments with varying degree of pathogen challenge, oxygenation, and iron concentration, factors known to alter hepcidin expression in mammals. We characterized the diversity of hepcidin genes of the Antarctic notothenioid fishes that are endemic to the world's coldest and most oxygen-rich marine water. Notothenioid fishes have at least 4 hepcidin variants, in 2 distinctive structural types. Type I hepcidins comprise 3 distinct variants that are homologs of the widespread 8-cysteine hepcidins. Type II is a novel 4-cysteine variant and therefore only 2 possible disulfide bonds, highly expressed in hematopoietic tissues. Analyses of d(N)/d(S) substitution rate ratios and likelihood ratio test under site-specific models detected significant signal of positive Darwinian selection on the mature hepcidin-coding sequence, suggesting adaptive evolution of notothenioid hepcidins. Genomic polymerase chain reaction and Southern hybridization showed that the novel type II hepcidin occurs exclusively in lineages of the Antarctic notothenioid radiation but not in the basal non-Antarctic taxa, and lineage-specific positive selection was detected on the branch leading to the type II hepcidin clade under branch-site models, suggesting adaptive evolution of the reduced cysteine variant in response to the polar environment. We also isolated a structurally distinct 4-cysteine (4cys) hepcidin from an Antarctic eelpout that is unrelated to the notothenioids but inhabits the same freezing water. Neighbor-Joining (NJ) analyses of teleost hepcidins showed that the eelpout 4cys variant arose independently from the notothenioid version, which lends support to adaptive evolution of reduced cysteine hepcidin variants on cold selection. The NJ tree also showed taxonomic-specific expansions of hepcidin variants, indicating that duplication and diversification of hepcidin genes play important roles in evolutionary response to diverse ecological conditions.     

Molecular cloning and functional characterization of a prolactin-releasing peptide homolog from Xenopus laevis

Amino acid sequences for identified prolactin (PRL)-releasing peptides (PrRPs) were conserved in mammals (>90%) or teleost fishes (100%), but there were considerable differences between these classes in the sequence (<65%) as well as in the role of PrRP. In species other than fishes and mammals, we have identified frog PrRP. The cDNA encoding Xenopus laevis prepro-PrRP, which can generate putative PrRPs, was cloned and sequenced. Sequences for the coding region showed higher identity with teleost PrRPs than mammalian homologues, but suggested the occurrence of putative PrRPs of 20 and 31 residues as in mammals. The amino acid sequence of PrRP20 was only one residue different from teleost PrRP20, but shared 70% identity with mammalian PrRP20s. In primary cultures of bullfrog (Rana catesbeiana) pituitary cells, Xenopus PrRPs increased prolactin concentrations in culture medium to 130–160% of the control, but PrRPs was much less potent than thyrotropin-releasing hormone (TRH) causing a three- to four-fold increase in prolactin concentrations. PrRP mRNA levels in the developing Xenopus brain peak in early prometamorphosis, different from prolactin levels. PrRP may not be a major prolactin-releasing factor (PRF), at least in adult frogs, as in mammals.