Drosophila topoisomerase II-DNA interactions are affected by DNA structure.

The binding of purified Drosophila topoisomerase II to the highly bent DNA segments from the SV40 terminus of replication and C. fasciculata kinetoplast minicircle DNA (kDNA) was examined using electron microscopy (EM). The probability of finding topoisomerase II positioned at or near the bent SV40 terminus and Crithidia fasciculata kDNA was two- and threefold higher, respectively, than along the unbent pBR325 DNA into which the elements had been cloned. Closer examination demonstrated that the enzyme bound preferentially to the junction between the bent and non-bent sequences. Using gel electrophoresis, a cluster of strong sodium dodecyl sulfate-induced topoisomerase II cleavage sites was mapped to the SV40 terminus DNA, and two weak cleavage sites to the C. fasciculata kDNA. As determined by EM, Drosophila topoisomerase II foreshortened the apparent length of DNA by only 15 base-pairs when bound, arguing that it does not wrap DNA around itself. When bound to pBR325 containing the C. fasciculata kDNA and the SV40 terminus, topoisomerase II often produced DNA loops. The size distribution was that predicted from the known probability of any two points along linear DNA colliding. In vitro mapping of topoisomerase II on DNA whose ends were blocked by avidin protein revealed that binding is enhanced at sites located near a blocked end as compared to a free end. These observations may contribute towards establishing a framework for understanding topoisomerase II-DNA interactions.     

Clock gene daily profiles and their phase relationship in the rat suprachiasmatic nucleus are affected by photoperiod

Rhythmicity of the rat suprachiasmatic nucleus (SCN), a site of the circadian pacemaker, is affected by daylength; that is, by the photoperiod. Whereas various markers of rhythmicity have been followed, so far there have been no studies on the effect of the photoperiod on the expression of the clock genes in the rat SCN. To fill the gap and to better understand the photoperiodic modulation of the SCN state, rats were maintained either under a long photoperiod with 16 h of light and 8 h of darkness per day (LD16:8) or under a short LD8:16 photoperiod, and daily profiles of Per1, Cry1, Bmal1 and Clock mRNA in darkness were assessed by in situ hybridization method. The photoperiod affected phase, waveform, and amplitude of the rhythmic gene expression as well as phase relationship between their profiles. Under the long period, the interval of elevated Per1 mRNA lasted for a longer and that of elevated Bmal1 mRNA for a shorter time than under the short photoperiod. Under both photoperiods, the morning and the daytime Per1 and Cry1 mRNA rise as well as the morning Bmal1 mRNA decline were closely linked to the morning light onset. Amplitude of Per1, Cry1, and Bmal1 mRNA rhythms was larger under the short than under the long photoperiod. Also, under the short photoperiod, the daily Clock mRNA profile exhibited a significant rhythm. Altogether, the data indicate that the whole complex molecular clockwork in the rat SCN is photoperiod dependent and hence may differ according to the season of the year.     

Developmental changes affected by Mn deficiency

The changes in tissue Mn, Cu, Fe, Zn, and Superoxide dismutase (SOD) activity were studied in control and Mn-deficient mice during postnatal development. Mn levels were lower in tissues from Mn-deficient mice than in controls throughout development. By day 60, Mn concentration in tissues from Mn-deficient mice was at least 70% lower than that of controls. Cu levels in the two groups did not differ appreciably. Liver Cu concentration was highest at day 5, then decreased. Heart and kidney Cu increased throughout development. Fe concentration in heart and liver was similar in both groups at 1, 5, and 20 days of age, but at day 60, kidney Fe in the Mn-deficient mice was 40% higher than in controls. The developmental pattern for MnSOD activity paralleled that of Mn concentration. At day 5, there were no differences in MnSOD activity between control and deficient mice. By day 60, MnSOD activity in most tissues was at least 50% lower than that of controls, possibly increasing the susceptibility of the Mn deficient animal to oxidative damage. These developmental patterns should help investigators to determine the tissues and time periods in which to study trace element metabolism.     

Daily changes of GABA and taurine concentrations in various hypothalamic areas are affected by chronic hyperprolactinemia

This study was designed to characterize, in anterior, mediobasal, and posterior hypothalamic and median eminence, the 24h changes of gamma aminobutyric acid (GABA) and taurine (TAU) contents in adult male rats and to analyze whether chronic hyperprolactinemia may affect these patterns. Rats were turned hyperprolactinemic by a pituitary graft. Plasma prolactin (PRL) levels increased after pituitary grafting at all time points examined. A disruption of the circadian rhythm was observed in pituitary-grafted rats, whereas GABA and TAU content followed daily rhythms in all areas studied in controls. In the mediobasal hypothalamus, two peaks for each amino acid were found at midnight and midday. In the anterior hypothalamus, GABA and TAU showed only one peak of concentration at midnight. In the posterior hypothalamus, the values of both GABA and TAU were higher during the light as compared to the dark phase of the photoperiod. In the median eminence GABA content peaked at 20:00h, the time when TAU exhibited the lowest values. Hyperprolactinemia abolished the 24h changes of GABA in the mediobasal hypothalamus and reduced its content as compared to controls. Hyperprolactinemia advanced the diurnal peak of TAU to 12:00h in the mediobasal hypothalamus and did not modify the 24:00h peak. In the anterior hypothalamus, hyperprolactinemia increased GABA and TAU contents during the light phase while it decreased them during the dark phase of the photoperiod. In the posterior hypothalamus hyperprolactinemia did not modify GABA or TAU patterns as compared to controls. In the median eminence hyperprolactinemia increased the 20:00h peak of GABA and shift advanced the decrease in TAU content at 20:00h and its maximum at 24:00h as compared to controls. These data show that GABA and TAU content exhibit specific daily patterns in each hypothalamic region studied. PRL differentially affects the daily pattern of these amino acids in each hypothalamic region analyzed.     

Metabolic profiles of Lolium perenne are differentially affected by nitrogen supply, carbohydrate content, and fungal endophyte infection

Lolium perenne cultivars differing in their capacity to accumulate water soluble carbohydrates (WSCs) were infected with three strains of fungal Neotyphodium lolii endophytes or left uninfected. The endophyte strains differed in their alkaloid profiles. Plants were grown at two different levels of nitrogen (N) supply in a controlled environment. Metabolic profiles of blades were analyzed using a variety of analytical methods. A total of 66 response variables were subjected to a principle components analysis and factor rotation. The first three rotated factors (46% of the total variance) were subsequently analyzed by analysis of variance. At high N supply nitrogenous compounds, organic acids and lipids were increased; WSCs, chlorogenic acid (CGA), and fibers were decreased. The high-sugar cultivar 'AberDove' had reduced levels of nitrate, most minor amino acids, sulfur, and fibers compared to the control cultivar 'Fennema', whereas WSCs, CGA, and methionine were increased. In plants infected with endophytes, nitrate, several amino acids, and, magnesium were decreased; WSCs, lipids, some organic acids, and CGA were increased. Regrowth of blades was stimulated at high N, and there was a significant endophyte x cultivar interaction on regrowth. Mannitol, a fungal specific sugar alcohol, was significantly correlated with fungal biomass. Our findings suggest that effects of endophytes on metabolic profiles of L. perenne can be considerable, depending on host plant characteristics and nutrient supply, and we propose that a shift in carbon/N ratios and in secondary metabolite production as seen in our study is likely to have impacts on herbivore responses.     

Cortical remodeling data are affected by sampling location

It has been argued that techniques for estimating adult ageat-death from cortical histology are deleteriously affected by sampling location. This study uses nine complete femoral midshaft cross-sections to test the effect of sampling site on measurement of a standard histological variable, percent remodeled bone. Circumferential periosteal fields from four anatomically defined locations (anterior, posterior, medial, lateral) and four mechanically defined locations (maximum and minimum moments of area) were evaluated. Locations deviating from the periosteal surface toward the endosteal surface were also compared. Significant differences were found for both location and field placement. The anatomical axes exhibited greater variability than the mechanical axes, in particular the anterior location, a standard sampling site for age-at-death estimation techniques. More endosteal fields tended to show elevated levels of percent remodeled bone. This study demonstrates that circumferential and radial sampling locations are important considerations in deriving and applying predictive equations based on cortical remodeling. © 1995 Wiley-Liss, Inc.     

Invasive mussels induce community changes by increasing habitat complexity

Habitat complexity is among the most important factors affecting the diversity, structure, and density of natural communities. The invasive byssate bivalves zebra mussel (Dreissena polymorpha (Pallas, 1771)) and golden mussel (Limnoperna fortunei (Dunker, 1857)) are sessile suspension feeders that form aggregations (druses), physically changing sediments and increasing habitat complexity, and providing shelter and food for other benthic organisms. In this study, we explored the impact of the change in habitat complexity on benthic community created by druses of L. fortunei and D. polymorpha, formed on various sediments. D. polymorpha was studied in Europe (Naroch Lake, Belarus) and in North America (Glen Lake and Lower Nashotah Lake, USA), and L. fortunei was studied in South America (Río Tercero Reservoir, Argentina). Druses of D. polymorpha or L. fortunei and samples of bare nearby sediment (without druses of exotic mussels) were collected at each sampling site. We found significant changes in species richness, density, biomass, taxonomic, and trophic structure of communities formed in druses compared to the nearby bare sediments. Community taxonomic richness increased threefold, and density increased sevenfold with increasing complexity of habitat from sand to druse. The feeding functional group approach indicated that the impact of increased complexity was reinforced by an increase in food supply in D. polymorpha and L. fortunei druses. Along with increasing species richness and densities, byssate bivalves homogenized benthic communities.     

Human erythroid cells are affected by aluminium. Alteration of membrane band 3 protein.

There is evidence that anaemia is associated with aluminium (Al). We have already reported on the sensitivity to Al, showed by erythroid cell populations of animals chronically exposed to the metal. In order to investigate whether Al could also affect human cells, experiments were carried out both on immature and mature human erythroid cells. Erythroid progenitors (CFU-E, colony-forming units-erythroid) concentrated from human peripheral blood were cultured in an Al-rich medium under erythropoietin stimulation and their development analysed. Human peripheral erythrocytes were aged in the presence of Al. Cells were examined using scanning electron microscopy, and membrane proteins analysed by polyacrylamide gel electrophoresis with sodium dodecyl sulphate and immunoblotting. The development of the Al-treated progenitors was 8750/6600-9200 CFU-E/10(6) cells, a significantly lower median value (P<0.05) than that showed by non-treated cells (12300/11200-20700 CFU-E/10(6) cells). Erythrocyte morphological changes were induced by Al during the in vitro ageing. The cells lost their typical biconcave shape, turning into acanthocytes and stomatocytes. Simultaneously, an increased membrane protein breakdown compatible with band 3 degradation was detected. Besides, Al was found within the cells and attached to the membrane. The present in vitro results suggest that Al may disturb human erythropoiesis through combined effects on mature erythrocytes and cellular metabolism in late erythroid progenitors.     

Ontogenetic changes in habitat use by whitefish,Coregonus lavaretus

Synopsis The whitefish, Coregonus lavaretus, in the lake Mj?sa exhibited two niche changes during their life cycle. Juveniles (< 25 cm body length) were confined to the shallow (0–30 m) epibenthic zone. Medium sized whitefish (25–35 cm body length) expanded their habitat use to include the deep (30–90 m) epibenthic zone as well as the pelagic zone. From a body length of 35 cm, habitat use was restricted to the deep epibenthic zone. Small fish in the shallow epibenthic zone ate small and medium-sized prey (zooplankton, insect larvae and surface insects). Medium-sized fish in this zone were in addition feeding on the larger amphipod, Pallasea quadrispinosa. In the pelagic zone, the diet of medium-sized whitefish was dominated by zooplankton, although some larger prey like surface insects and age-0 smelt, Osmerus eperlanus, were also eaten. In the deep epibenthic zone, the diet of both medium-sized and large (< 35 cm) whitefish consisted mainly of the large prey P. quadrispinosa.     

Successional changes in habitat caused by sedimentation in navigation pools

Effects of Cu and Zn through food as well as through the water on the growth and emergence of the young larvae of Epeorus latifolium (Ephemeroptera), were investigated using an indoor model stream. The critical lowest concentrations of Cu which have significant effects on the growth of the larvae were between 10 and 15 µg l^-1 Cu. Growth and emergence of the larvae fed on the algae (diatoms) which accumulated more than 1000 µg Cu g^-1 (dry wt.) were significantly impaired. Growth of the mayfly larvae exposed to 100 or 300 µg l^-1 Zn ceased after the second week, and all died before emergence. At 30 µg l^-1 Zn, the growth rate decreased gradually and many larvae died before emergence. The molt interval also nearly doubled that of the control at these concentrations. Growth and emergence of the mayfly fed the algae which accumulated more than 2000 µg g^-1 of Zn were significantly affected.     

Nerve impulse propagation affected by sol-gel changes in axoplasm

Changes in temperature and pressure alter the gel-sol state of protoplasm. The degree of gelation relates to the structural properties of protoplasm and since the propagation velocity of a nerve impulse depends on the apparent modulus of elasticity, altering temperature and pressure changes the velocity of the impulse.     

Salmonella spp. are affected by different levels of water activity in closed microcosms

Controlling water activity (a _w) can significantly impact the growth of Salmonella in poultry litter and manure — a phenomenon that was studied quantitatively using two common serotypes of Salmonella. The quantitative effect of changes in levels of a _w on Salmonella populations was determined using inoculated, frosted glass rectangles placed in closed chambers (microcosms). Glass rectangles with known concentrations of Salmonella enteritidis and S. brandenburg were placed in microcosms maintained at an a _w level of 0.893 for 24 h at room temperature (RT) and then transferred to other microcosms maintained at the same temperature but with higher a _w levels (0.932 and 0.987). Salmonella populations on the slides were quantified at 4, 18, 24, and 48 h. Slightly elevated levels of a _w (<0.1, i.e., 10% equilibrium relative humidity) for 24 h resulted in a 100-fold increase in counts of Salmonella. The data also suggested that in vitro adaptation to dry environments may occur when the organisms are exposed to alternating levels of relatively high and low (0.987 and 0.893) levels of a _w. Any increased tolerance of Salmonella to reduced levels of a _w could be the result of physico-chemical changes in the organism due to selective environmental pressure, formation of a protective biofilm, and/or entry into a dormant state. Results from this study are compatible with those from previously reported on-farm surveys, reinforcing the contention that maintaining a _w below 0.85 in and around litter/manure surfaces in poultry or livestock bedding areas may be a critical factor in safe production of food. Journal of Industrial Microbiology & Biotechnology (2001) 26, 222–225. Received 18 May 2000/ Accepted in revised form 24 January 2001     

Pseudomonas fluorescens adhesion and transport through porous media are affected by lipopolysaccharide composition.

The objectives of this work were (i) to use transposon mutagenesis to produce mutants of Pseudomonas fluorescens that were altered in adhesion ability and transport through porous media and (ii) to identify the alterations in surface characteristics that were responsible for the changes in attachment. Mutants of P. fluorescens were generated with TnphoA, which enabled identification of mutants that were altered in surface proteins. Transposon mutants were screened for alterations in adhesion ability by attachment assays on hydrophobic polystyrene and water-wettable polystyrene. Four TnphoA mutants with increased adhesion to the hydrophobic surface and decreased adhesion to the water-wettable surface were obtained. Transport of the strains through porous media was evaluated by passing suspensions of each mutant and the parent through columns containing quartz sand and determining the number of cells retained in the columns. The mutants all demonstrated increased adhesion and retention in the columns. Southern analysis demonstrated two types of mutants with separate transposon insertion sites. Polyacrylamide gel electrophoresis of the strains demonstrated that the O antigen on the lipopolysaccharide was either attenuated or absent. Lack of this polysaccharide, and the consequent increased exposure of the lipid moiety of the lipopolysaccharide, is probably responsible for the increase in adhesion to the hydrophobic substrata and retention in the sand column. This work combined with previous studies of attachment of P. fluorescens demonstrates that more than one type of polymer can mediate the adhesion of this organism to nonbiological surfaces.     

Human erythroid cells are affected by aluminium. Alteration of membrane band 3 protein

There is evidence that anaemia is associated with aluminium (Al). We have already reported on the sensitivity to Al, showed by erythroid cell populations of animals chronically exposed to the metal. In order to investigate whether Al could also affect human cells, experiments were carried out both on immature and mature human erythroid cells. Erythroid progenitors (CFU-E, colony-forming units-erythroid) concentrated from human peripheral blood were cultured in an Al-rich medium under erythropoietin stimulation and their development analysed. Human peripheral erythrocytes were aged in the presence of Al. Cells were examined using scanning electron microscopy, and membrane proteins analysed by polyacrylamide gel electrophoresis with sodium dodecyl sulphate and immunoblotting. The development of the Al-treated progenitors was 8750/6600-9200 CFU-E/10⁶ cells, a significantly lower median value (P<0.05) than that showed by non-treated cells (12?300/11?200-20?700 CFU-E/10⁶ cells). Erythrocyte morphological changes were induced by Al during the in vitro ageing. The cells lost their typical biconcave shape, turning into acanthocytes and stomatocytes. Simultaneously, an increased membrane protein breakdown compatible with band 3 degradation was detected. Besides, Al was found within the cells and attached to the membrane. The present in vitro results suggest that Al may disturb human erythropoiesis through combined effects on mature erythrocytes and cellular metabolism in late erythroid progenitors.     

Population structure and fruit production of Pyrus bourgaeana D. are affected by land-use

The Iberian wild pear (Pyrus bourgaeana D.) is a rare, fleshy-fruited tree restricted to dehesas and evergreen sclerophyllous Mediterranean forests in the southwestern Iberian Peninsula. It produces palatable fruits and leaves attractive to different species groups, playing an important trophic role in the ecological networks of Mediterranean ecosystems. However, the intensification in the traditional land-use linked to these areas could threaten the stability of the wild pear populations in the short/medium-term. In order to determine the population dynamics of this relevant species in relation to the land-use history, we selected two populations (southern Spain) subjected to different land-use management, dehesa (D) and abandoned olive grove (AOG). An analysis of 122 adult trees reported an overall density of 0.6 trees ha⁻¹. The tree age was estimated by tree-rings analysis in all adult trees. Dendrometric parameters, reproductive features, and germination rates were also measured. Regeneration was clearly biased, as evidenced by the truncated age structure. A low correlation (R² = 34%) between age and DBH (diameter at breast height) (244 cores analysed) showed that diameter seems not to be a reliable predictor of tree age. Trees from AOG populations had significantly-higher values of DBH, height and crown diameter, but were less productive in terms of fruits and seeds. Nested analysis of variance showed significant variation in fruit production, fruit size, dry mass, water content and seed viability. There were also significant differences in masting. No evidence was found to demonstrate that fruit production, seed viability, or germination rate influence the low natural recruitment of this species. These findings indicate that the traditional agrosilvopastoral practices carried out in the study area for decades, and its subsequent intensification, have strongly influenced the ecological structure of the Iberian wild pear populations at the local scale, which could compromise its stability in the near future.     

Species richness and food web structure of soil decomposer community as affected by the size of habitat fragment and habitat corridors

While most ecologists agree that the effects of fragmentation on diversity of organisms are predominantly negative and that the scale of fragmentation defines their severity, the role of habitat corridors in mitigating those effects still remains controversial. This ambiguousness rests largely on various difficulties in experimentation, a problem partially solved in the present paper by the use of easily manipulated soil communities. In this 2.5‐year‐long field experiment, we investigated the responses of soil decomposer organisms (from microbes to mesofaunal predators) to habitat fragment size, in the presence or absence of habitat corridors connecting the fragments. The habitat fragments and corridors, composed of forest humus soil, were embedded in mineral soil representing an uninhabitable (or nonpreferred) matrix for the decomposer organisms. The results demonstrate that soil decomposer organisms do respond to changes in their habitat size: the species richness of microarthropods (mites and collembolans) increased as the size of the fragments increased. Especially collembolan species and predatory mites proved to be sensitive to the restricted habitat size, which is suggested to be a consequence of the large proportion of rare species and small and fluctuating population sizes in these groups. Contrary to our expectations, the presence of corridors had no positive effects on species richness or abundance of any of the studied faunas, possibly because of the low quality of the corridors. On the other hand, the biomass of soil fungi increased in the presence of corridors, which apparently provided a preferred pathway for vegetative dispersal of the fungi. Our results indicate that despite their characteristic underground environment, the response of soil decomposer organisms – in particular that of microarthropods – to habitat size is not unlike to that of the larger organisms in aboveground habitats.