Energetics of microbial food webs

The energetic demand of microorganisms in natural waters and the flux of energy between microorganisms and metazoans has been evaluated by empirical measurements in nature, in microcosms and mesocosms, and by simulation models. Microorganisms in temperate and tropical waters often use half or more of the energy fixed by photosynthesis. Most simulations and some experimental results suggest significant energy transfer to metazoans, but empirical evidence is mixed. Considerations of the range of growth yields of microorganisms and the number of trophic transfers among them indicate major energy losses within microbial food webs. Our ability to verify and quantify these processes is limited by the variability of assimilation efficiency and uncertainty about the structure of microbial food webs. However, even a two-step microbial chain is a major energy sink. As an energetic link to metazoans, the detritus food web is inefficient, and its significance may have been overstated. There is not enough bacterial biomass associated with detritus to support metazoan detritivores. Much detritus is digestible by metazoans directly. Thus, metazoans and bacteria may to a considerable degree compete for a common resource. Microorganisms, together with metazoans, are important to the stability of planktonic communities through their roles as rapid mineralizers of organic matter, releasing inorganic nutrients. The competition for organic matter and the resultant rapid mineralization help maintain stable populations of phytoplankton in the absence of advective nutrient supply. At temperatures near O °C, bacterial metabolism is suppressed more than is the rate of photosynthesis. As a result, the products of the spring phytoplankton bloom in high-temperate latitudes are not utilized rapidly by bacteria. At temperatures below 0°C microbial food webs are neither energy sinks or links: they are suppressed. Because the underlying mechanism of low-temperature inhibition is not known, we cannot yet generalize about this as a control of food web processes. Microorganisms may operate on several trophic levels simultaneously. Therefore, the realism of the trophic level concept and the reality of the use of ecological efficiency calculations in ecosystem models is questionable.     

Does microbial biomass affect pelagic ecosystem efficiency? An experimental study

Bacteria and other microorganisms in the pelagic zone participate in the recycling of organic matter and nutrients within the water column. The microbial loop is thought to enhance ecosystem efficiency through rapid recycling and reduced sinking rates, thus reducing the loss of nutrients contained in organisms remaining within the photic zone. We conducted experiments with lake communities in 5400-liter mesocosms, and measured the flux of materials and nutrients out of the water column. A factorial design manipulated 8 nutrient treatments: 4 phosphorus levels × 2 nitrogen levels. Total sedimentation rates were greatest in high-N mesocosms; within N-surplus communities, 1 µM P resulted in 50% increase in total particulate losses. P additions without added N had small effects on nutrient losses from the photic zone; +2 µM P tanks received 334 mg P per tank, yet after 14 days lost only 69 mg more particulate-P than did control communities. Nutrient treatments resulted in marked differences in phytoplankton biomass (twofold N effect, fivefold P effect in +N mesocosms only), bacterioplankton densities (twofold N-effect, twofold P effects in -N and +N mesocosms), and the relative importance of autotrophic picoplankton (maximum in high NY mesocosms). Multiple regression analysis found that of 8 plankton and water chemistry variables, the ratio of autotrophic picoplankton to total phytoplankton (measured as chlorophyll ) explained the largest portion of the total variation in sedimentation loss rates (65% of P-flux, 57% of N-flux, 26% of total flux). In each case, systems with greater relative importance of autotrophic picoplankton had significantly reduced loss rates. In contrast, greater numbers of planktonic bacteria were associated with increased sedimentation rates and lower system efficiency. We suggest that different microbial components may have contrasting effects on the presumed enhanced efficiency provided by the microbial loop.Correspondence to: J. D. Wehr.     

Inorganic nutrients,bacteria, and the microbial loop

The realization that natural assemblages of planktonic bacteria may acquire a significant fraction of their nitrogen and phosphorus via the uptake of dissolved inorganic nutrients has modified our traditional view of these microorganisms as nutrient remineralizers in plankton communities. Bacterial uptake of inorganic nitrogen and phosphorus may place bacteria and phytoplankton in competition for growth-limiting nutrients, rather than in their traditional roles as the respective source and sink for these nutrients in the plankton. Bacterial nutrient uptake also implies that bacterivorous protozoa may play a pivotal role in the remineralization of these elements in the microbial loop. The overall contribution of bacterial utilization of inorganic nutrients to total nutrient uptake in the ocean is still poorly understood, but some generalizations are emerging with respect to the geographical areas and community physiological conditions that might elicit this behavior.     

Empirical models for predicting the excretion of nutrients (N and P) by aquatic metazoans: taxonomic differences in rates and element ratios

1. We developed empirical models for predicting the release of nutrients [nitrogen (N) and phosphorus (P)] by aquatic metazoans (zooplankton, mussels, benthic macroinvertebrates and fish). 2. The number of species represented in each model ranged from 9 to 74 (n = 40 – 1122), organism dry mass from 1 × 10^?5 to 8 × 10⁴ mg and water temperature from ?1.8 to 32 °C for all models. Organisms were from marine and freshwater (both lotic and lentic) environments. 3. Rates and ratios of nutrient excretion were modelled and intra‐ and intertaxon differences in excretion were examined. Rates of N and P excretion were not significantly different between marine and freshwater species within the same taxon (e.g. zooplankton). However, rates of excretion (as a function of organism dry mass and water temperature) were significantly different among different orders of zooplankton, mussels and fish. However, excretion of N was similar among different orders of benthic macroinvertebrates. 4. Detritivorous fish excreted both N and P at rates greater than all other taxa; whereas mussels excreted N and P generally at rates less than other taxa. There were no significant differences in the rate of N and P excretion between zooplankton and fish (i.e. the allometry of N and P excretion was similar between zooplankton and fish). 5. Molar N : P ratios of nutrients excreted increased with increasing organism dry mass for each group of metazoans, except for zooplankton and detritivorous fish (where N : P ratios declined with increasing organism dry mass). Molar N : P ratios in the excretions of aquatic metazoans were generally below the Redfield ratio of 16:1. 6. We examined the influence of variable abundance of zooplankton, benthic macroinvertebrates and fish on assemblage excretion rates. Rates of N and P excretion were calculated by applying our models to metazoan biomass and abundance data over seven consecutive years in two oligotrophic lakes. Rates of N and P excretion (g ha^?1 day^?1) increased linearly with increasing assemblage biomass (kg ha^?1). However, rates of N and P excretion were significantly and negatively correlated with the relative abundance of fish and positively correlated with the relative abundance of zooplankton.     

Changes in Microbial Plankton Assemblages Induced by Mesoscale Oceanographic Features in the Northern Gulf of Mexico

Mesoscale circulation generated by the Loop Current in the Northern Gulf of Mexico (NGOM) delivers growth-limiting nutrients to the microbial plankton of the euphotic zone. Consequences of physicochemically driven community shifts on higher order consumers and subsequent impacts on the biological carbon pump remain poorly understood. This study evaluates microbial plankton <10 μm abundance and community structure across both cyclonic and anti-cyclonic circulation features in the NGOM using flow cytometry (SYBR Green I and autofluorescence parameters). Non-parametric multivariate hierarchical cluster analyses indicated that significant spatial variability in community structure exists such that stations that clustered together were defined as having a specific ‘microbial signature’ (i.e. statistically homogeneous community structure profiles based on relative abundance of microbial groups). Salinity and a combination of sea surface height anomaly and sea surface temperature were determined by distance based linear modeling to be abiotic predictor variables significantly correlated to changes in microbial signatures. Correlations between increased microbial abundance and availability of nitrogen suggest nitrogen-limitation of microbial plankton in this open ocean area. Regions of combined coastal water entrainment and mesoscale convergence corresponded to increased heterotrophic prokaryote abundance relative to autotrophic plankton. The results provide an initial assessment of how mesoscale circulation potentially influences microbial plankton abundance and community structure in the NGOM.     

The effects of mixotrophy on the stability and dynamics of a simple planktonic food web model

Recognition of the microbial loop as an important part of aquatic ecosystems disrupted the notion of simple linear food chains. However, current research suggests that even the microbial loop paradigm is a gross simplification of microbial interactions due to the presence of mixotrophs-organisms that both photosynthesize and graze. We present a simple food web model with four trophic species, three of them arranged in a food chain (nutrients-autotrophs-herbivores) and the fourth as a mixotroph with links to both the nutrients and the autotrophs. This model is used to study the general implications of inclusion of the mixotrophic link in microbial food webs and the specific predictions for a parameterization that describes open ocean mixed layer plankton dynamics. The analysis indicates that the system parameters reside in a region of the parameter space where the dynamics converge to a stable equilibrium rather than displaying periodic or chaotic solutions. However, convergence requires weeks to months, suggesting that the system would never reach equilibrium in the ocean due to alteration of the physical forcing regime. Most importantly, the mixotrophic grazing link seems to stabilize the system in this region of the parameter space, particularly when nutrient recycling feedback loops are included.     

Herbivores and the Spatial Distributions of the Phytoplankton. II. Estimating Grazing in Planktonic Environments

Large errors are made when laboratory measurements of the ingestion rate of herbivorous zoo-plankton are used to estimate grazing in planktonic environments. The errors arise because the spatial heterogeneity in natural plankton distributions is greater than the heterogeneity present in laboratory experiments. Two probability models are developed for extrapolating laboratory measurements of ingestion to planktonic environments. Both models require sample statistics of the plankton distributions, and these are estimated from sampling studies of the small scale distribution of marine plankton. One model predicts laboratory measurements overestimate the ration obtained by an individual copepod by 30 %. A second model predicts errors exceeding ±50 % are possible when laboratory measurements are used to estimate the grazing by a population of cope-pods.     

IMOS National Reference Stations: A Continental-Wide Physical,Chemical and Biological Coastal Observing System

Sustained observations allow for the tracking of change in oceanography and ecosystems, however, these are rare, particularly for the Southern Hemisphere. To address this in part, the Australian Integrated Marine Observing System (IMOS) implemented a network of nine National Reference Stations (NRS). The network builds on one long-term location, where monthly water sampling has been sustained since the 1940s and two others that commenced in the 1950s. In-situ continuously moored sensors and an enhanced monthly water sampling regime now collect more than 50 data streams. Building on sampling for temperature, salinity and nutrients, the network now observes dissolved oxygen, carbon, turbidity, currents, chlorophyll a and both phytoplankton and zooplankton. Additional parameters for studies of ocean acidification and bio-optics are collected at a sub-set of sites and all data is made freely and publically available. Our preliminary results demonstrate increased utility to observe extreme events, such as marine heat waves and coastal flooding; rare events, such as plankton blooms; and have, for the first time, allowed for consistent continental scale sampling and analysis of coastal zooplankton and phytoplankton communities. Independent water sampling allows for cross validation of the deployed sensors for quality control of data that now continuously tracks daily, seasonal and annual variation. The NRS will provide multi-decadal time series, against which more spatially replicated short-term studies can be referenced, models and remote sensing products validated, and improvements made to our understanding of how large-scale, long-term change and variability in the global ocean are affecting Australia''s coastal seas and ecosystems. The NRS network provides an example of how a continental scaled observing systems can be developed to collect observations that integrate across physics, chemistry and biology.     

Identification and Sequence Analysis of Metazoan tRNA 3'-End Processing Enzymes tRNase Zs

tRNase Z is the endonuclease responsible for removing the 3'-trailer sequences from precursor tRNAs, a prerequisite for the addition of the CCA sequence. It occurs in the short (tRNase Z(S)) and long (tRNase Z(L)) forms. Here we report the identification and sequence analysis of candidate tRNase Zs from 81 metazoan species. We found that the vast majority of deuterostomes, lophotrochozoans and lower metazoans have one tRNase Z(S) and one tRNase Z(L) genes, whereas ecdysozoans possess only a single tRNase Z(L) gene. Sequence analysis revealed that in metazoans, a single nuclear tRNase Z(L) gene is likely to encode both the nuclear and mitochondrial forms of tRNA 3'-end processing enzyme through mechanisms that include alternative translation initiation from two in-frame start codons and alternative splicing. Sequence conservation analysis revealed a variant PxKxRN motif, PxPxRG, which is located in the N-terminal region of tRNase Z(S)s. We also identified a previously unappreciated motif, AxDx, present in the C-terminal region of both tRNase Z(S)s and tRNase Z(L)s. The AxDx motif consisting mainly of a very short loop is potentially close enough to form hydrogen bonds with the loop containing the PxKxRN or PxPxRG motif. Through complementation analysis, we demonstrated the likely functional importance of the AxDx motif. In conclusion, our analysis supports the notion that in metazoans a single tRNase Z(L) has evolved to participate in both nuclear and mitochondrial tRNA 3'-end processing, whereas tRNase Z(S) may have evolved new functions. Our analysis also unveils new evolutionarily conserved motifs in tRNase Zs, including the C-terminal AxDx motif, which may have functional significance.     

Nutrient stocks and phosphorus fractions in mountain soils of Southern Ecuador after conversion of forest to pasture

Understanding pasture degradation processes is the key for sustainable land management in the tropical mountain rainforest region of the South Ecuadorian Andes. We estimated the stocks of total carbon and nutrients, microbial biomass and different P fractions along a gradient of land-uses that is typical of the eastern escarpment of the Cordillera Real i.e., old-growth evergreen lower montane forest, active pastures (17 and 50 years-old), abandoned pastures 10 and 20 years old with bracken fern or successional vegetation. Conversion of forest to pasture by slash-and-burn increased the stocks of SOC, TN, P and S in mineral topsoil of active pasture sites. Microbial growth in pasture soils was enhanced by improved availability of nutrients, C:N ratio, and increased soil pH. Up to 39 % of the total P in mineral soil was stored in the microbial biomass indicating its importance as a dynamic, easily available P reservoir at all sites. At a 17 years-old pasture the stock of NH₄F extractable organic P, which is considered to be mineralisable in the short-term, was twice as high as in all other soils. The importance of the NaOH extractable organic P pool increased with pasture age. Pasture degradation was accelerated by a decline of this P stock, which is essential for the long-term P supply. Stocks of microbial biomass, total N and S had returned to forest levels 10 years after pasture abandonment; soil pH and total P 20 years after growth of successional bush vegetation. Only the C:N ratio increased above forest level indicating an ongoing loss of N after 20 years. Soil nutrient depletion and microbial biomass decline enforced the degradation of pastures on the investigated Cambisol sites.     

PCR primers for metazoan mitochondrial 12S ribosomal DNA sequences

Background

Assessment of the biodiversity of communities of small organisms is most readily done using PCR-based analysis of environmental samples consisting of mixtures of individuals. Known as metagenetics, this approach has transformed understanding of microbial communities and is beginning to be applied to metazoans as well. Unlike microbial studies, where analysis of the 16S ribosomal DNA sequence is standard, the best gene for metazoan metagenetics is less clear. In this study we designed a set of PCR primers for the mitochondrial 12S ribosomal DNA sequence based on 64 complete mitochondrial genomes and then tested their efficacy.

Methodology/Principal Findings

A total of the 64 complete mitochondrial genome sequences representing all metazoan classes available in GenBank were downloaded using the NCBI Taxonomy Browser. Alignment of sequences was performed for the excised mitochondrial 12S ribosomal DNA sequences, and conserved regions were identified for all 64 mitochondrial genomes. These regions were used to design a primer pair that flanks a more variable region in the gene. Then all of the complete metazoan mitochondrial genomes available in NCBI''s Organelle Genome Resources database were used to determine the percentage of taxa that would likely be amplified using these primers. Results suggest that these primers will amplify target sequences for many metazoans.

Conclusions/Significance

Newly designed 12S ribosomal DNA primers have considerable potential for metazoan metagenetic analysis because of their ability to amplify sequences from many metazoans.     

不同土地利用模式对辽东山区土壤微生物群落多样性的影响

运用Biolog-Eco技术对辽东山区蒙古栎林、灌木林、人工落叶松林、人工红松林和玉米农田的土壤微生物群落进行研究,分析土壤理化性质与土壤微生物多样性间的相关性,以及不同土地利用模式对辽东山区土壤微生物的影响.结果表明: 蒙古栎林全C和全N含量最高,分别为57.74和4.40 g·kg^-1,灌木林次之,玉米地最低,分别为17.46和1.31 g·kg^-1.不同土地利用模式下土壤微生物群落代谢活性差异显著,总碳源的利用能力(平均吸光值)依次为蒙古栎林>灌木林>人工落叶松林>人工红松林>玉米地,玉米地土壤微生物代谢最慢,活性最弱.玉米农田土壤微生物的Shannon指数(2.997)、Simpson指数(0.942)、McIntosh(5.256)指数均显著低于其他土地利用模式.平均吸光值(AWCD)与Simpson指数和McIntosh指数显著相关.酯类、醇类和胺类是分异作用的主要碳源,这可能是林分凋落物、土壤养分、土壤特异性微生物等共同作用的结果.林地开垦后,土壤养分急剧下降,土壤微生物群落的功能多样性降低,造成土壤质量下降,该地区应保持阔叶蒙古栎林,这有助于土壤肥力恢复.     

Micro‐scale structure in the chemistry and biology of a shallow lake

1. Repeat sampling in daytime within a lily (Nuphar lutea) bed and in open water showed distinct heterogeneities in the three‐dimensional distributions of water chemistry and planktonic organisms on centimetre to decimetre scales. 2. Vertical gradients of physico‐chemical variables that did not exist at dawn developed during the day in both sites, as available nutrients were released from the sediments and were consumed towards the surface. 3. Distributions of algal standing crop suggest limitation by both nutrients and grazing. 4. Marked variability in distributions may question the assumptions often made about the homogeneity of plankton and available nutrient distributions in open water and in macrophyte stands of shallow lakes. Although simple sampling regimes for monitoring of water quality may be adequate for many purposes, they miss a fine structure in the water that is inherently interesting in understanding the underlying processes of plankton function.     

Catheterization of Intestinal Loops in Ruminants

The intestine is a complex structure that is involved not only in absorption of nutrients, but also acts as a barrier between the individual and the outside world. As such, the intestine plays a pivotal role in immunosurveillance and protection from enteric pathogens. Investigating intestinal physiology and immunology commonly employs ''intestinal loops'' as an experimental model. The majority of these loop models are non-recovery surgical procedures that study short-term (<24 hr) changes in the intestine (1-3). We previously created a recovery intestinal loop model to specifically measure long-term (<6 mo) immunological changes in the intestine of sheep following exposure to vaccines, adjuvants, and viruses (4). This procedure localized treatments to a specific ''loop'', allowing us to sample this area of the intestine. A significant drawback of this method is the single window of opportunity to administer treatments (i.e. at the time of surgery). Furthermore, samples of both the intestinal mucosa and luminal contents can only be taken at the termination of the project. Other salient limitations of the above model are that the surgical manipulation and requisite post-operative measures (e.g. administration of antibiotics and analgesics) can directly affect the treatment itself and/or alter immune function, thereby confounding results. Therefore, we modified our intestinal loop model by inserting long-term catheters into the loops. Sheep recover fully from the procedure, and are unaffected by the exteriorized catheters. Notably, the establishment of catheters in loops allows us to introduce multiple treatments over an extended interval, following recovery from surgery and clearance of drugs administered during surgery and the post-operative period.Open in a separate windowClick here to view.^{(66M, flv)}     

CASP10–BCL::Fold efficiently samples topologies of large proteins

During CASP10 in summer 2012, we tested BCL::Fold for prediction of free modeling (FM) and template‐based modeling (TBM) targets. BCL::Fold assembles the tertiary structure of a protein from predicted secondary structure elements (SSEs) omitting more flexible loop regions early on. This approach enables the sampling of conformational space for larger proteins with more complex topologies. In preparation of CASP11, we analyzed the quality of CASP10 models throughout the prediction pipeline to understand BCL::Fold's ability to sample the native topology, identify native‐like models by scoring and/or clustering approaches, and our ability to add loop regions and side chains to initial SSE‐only models. The standout observation is that BCL::Fold sampled topologies with a GDT_TS score > 33% for 12 of 18 and with a topology score > 0.8 for 11 of 18 test cases de novo. Despite the sampling success of BCL::Fold, significant challenges still exist in clustering and loop generation stages of the pipeline. The clustering approach employed for model selection often failed to identify the most native‐like assembly of SSEs for further refinement and submission. It was also observed that for some β‐strand proteins model refinement failed as β‐strands were not properly aligned to form hydrogen bonds removing otherwise accurate models from the pool. Further, BCL::Fold samples frequently non‐natural topologies that require loop regions to pass through the center of the protein. Proteins 2015; 83:547–563. © 2015 Wiley Periodicals, Inc.     

Nutrient dynamics and pelagic food web interactions in oligotrophic and eutrophic environments: an overview

The concept of limiting nutrients is a cornerstone of theories concerning the control of production, structure and dynamics of freshwater and marine plankton. The current dogma is that nitrogen is limiting in most marine environments while freshwater ecosystems are mostly phosphorus-limited, although evidence of phytoplankton limitation by either N or P has been found in both environments.However, the same considerations apply to the availability of phosphorus in freshwater as to nitrogen in oceans. In resource-limited environments the plankton dynamics depend mostly on the internal mechanisms which act to recycle the limiting nutrient many times over within the surface waters. As the overall productivity increases, this dependence on nutrient regeneration decreases.The relationship between the stock of limiting nutrient, rates of supply and plankton dynamics must therefore be seen in the light of the processes operating within the entire food chain over quite different time scales. There is strong evidence that process-rates are mostly size-dependent and that food web interactions at the microbial level (picophytoplankton, bacteria, microheterotrophs) strongly effect the production of carbon and the regeneration of nutrients in the pelagic zone.     

Assessment of the ecological status of regulated lakes: stressor-specific metrics from littoral fish assemblages

Although in situ sediment capping is frequently used to reduce internal loading of contaminants and nutrients, post-application assessment rarely includes the potential undesirable short-term effects on plankton species composition. We hypothesised that a modified zeolite (Z2G1) application as a sediment capping agent in Lake Okaro, New Zealand, could cause significant undesirable shifts in species composition of both zooplankton and phytoplankton due to burial of resting stages or interference with feeding for the zooplankton. Alternatively, we predicted that the capping agent might have no effect due to, for example, the coarse grain size of the material (1–3 mm). We used multidimensional scaling (MDS) and analysis of similarity (ANOSIM) to identify any adverse effects of Z2G1 on zooplankton and phytoplankton species composition (i.e. shifts in community structure, including species loss) by comparing the community structure before and after the Z2G1 application. We found no significant differences in species composition before and after the Z2G1 application at the depths investigated (surface and 9 m). However, all of the analyses showed statistically significant differences among seasons, indicating seasonal variations in plankton composition far outweigh those that may have resulted from the Z2G1 application. Coarse particle size, low dose rate and a restricted area where the sediment capping agent was applied were considered to be the factors limiting potential adverse effects on plankton species. Considerations of finer-grained material to increase coverage and efficacy of phosphorus adsorption require assessment for their effects on zooplankton, however, and a direct mode of application into the hypolimnion is recommended to minimise effects on zooplankton and phytoplankton communities.     

Genetic monitoring of open ocean biodiversity: An evaluation of DNA metabarcoding for processing continuous plankton recorder samples

DNA metabarcoding is an efficient method for measuring biodiversity, but the process of initiating long‐term DNA‐based monitoring programmes, or integrating with conventional programs, is only starting. In marine ecosystems, plankton surveys using the continuous plankton recorder (CPR) have characterized biodiversity along transects covering millions of kilometres with time‐series spanning decades. We investigated the potential for use of metabarcoding in CPR surveys. Samples (n = 53) were collected in two Southern Ocean transects and metazoans identified using standard microscopic methods and by high‐throughput sequencing of a cytochrome c oxidase subunit I marker. DNA increased the number of metazoan species identified and provided high‐resolution taxonomy of groups problematic in conventional surveys (e.g., larval echinoderms and hydrozoans). Metabarcoding also generally produced more detections than microscopy, but this sensitivity may make cross‐contamination during sampling a problem. In some samples, the prevalence of DNA from large plankton such as krill masked the presence of smaller species. We investigated adding a fixed amount of exogenous DNA to samples as an internal control to allow determination of relative plankton biomass. Overall, the metabarcoding data represent a substantial shift in perspective, making direct integration into current long‐term time‐series challenging. We discuss a number of hurdles that exist for progressing DNA metabarcoding from the current snapshot studies to the requirements of a long‐term monitoring programme. Given the power and continually increasing efficiency of metabarcoding, it is almost certain this approach will play an important role in future plankton monitoring.     

Structure and functioning of the microbial loop in a boreal reservoir

The abundance and biomass of the main components of the microbial plankton food web (“microbial loop”)—heterotrophic bacteria, phototrophic picoplankton and nanoplankton, heterotrophic nanoflagellates, ciliates and viruses, production of phytoplankton and bacterioplankton, bacterivory of nanoflagellates, bacterial lysis by viruses, and the species composition of protists—have been determined in summer time in the Sheksna Reservoir (the Upper Volga basin). A total of 34 species of heterotrophic nanoflagellates from 15 taxa and 15 species of ciliates from 4 classes are identified. In different parts of the reservoir, the biomass of the microbial community varies from 26.2 to 64.3% (on average 45.5%) of the total plankton biomass. Heterotrophic bacteria are the main component of the microbial community, averaging 63.9% of the total microbial biomass. They are the second (after the phytoplankton) component of the plankton and contribute on average 28.6% to the plankton biomass. The high ratio of the production of heterotrophic bacteria to the production of phytoplankton indicates the important role of bacteria, which transfer carbon of allochthonous dissolved organic substances to a food web of the reservoir.     

Impact of resuspension of cohesive sediments at the Oyster Grounds (North Sea) on nutrient exchange across the sediment–water interface

Benthic-pelagic exchange processes are recognised as important nutrient sources in coastal areas, however, the relative impact of diffusion, resuspension and other processes such as bioturbation and bioirrigation are still relatively poorly understood. Experimental ship-based data are presented showing the effects of diffusion and resuspension on cohesive sediments at a temperate shelf location in the North Sea. Measurements of diffusive fluxes in both spring (1.76, 0.51, ?0.91, 17.6 μmol/m²/h) and late summer (8.53, ?0.03, ?1.12, 35.0 μmol/m²/h) for nitrate, nitrite, phosphate and dissolved silicon respectively, provided comparisons for measured resuspension fluxes. Increases in diffusive fluxes of nitrate and dissolved silicon to the water column in late summer coincided with decreases in bottom water oxygen concentrations and increases in temperature. Resuspension experiments using a ship board annular flume and intact box core allowed simultaneous measurement of suspended particulate matter, water velocity and sampling of nutrients in the water column during a step wise increase in bed shear velocity. The resuspension of benthic fluff led to small but significant releases of phosphate and nitrate to the water column with chamber concentration increasing from 0.70–0.76 and 1.84–2.22 μmol/L respectively. Resuspension of the sediment bed increased water column concentrations of dissolved silicon by as much as 125% (7.10–15.9 μmol/L) and nitrate and phosphate concentrations by up to 67% (1.84–3.08 μmol/L) and 66% (0.70–1.15 μmol/L) respectively. Mass balance calculations indicate that processes such as microbial activity or adsorption/desorption other than simple release of pore water nutrients must occur during resuspension to account for the increase. This study shows that resuspension is potentially an important pathway for resupplying the water column with nutrients before and during phytoplankton blooms and should therefore be considered along with diffusive fluxes in future ecosystem models.