The perceptual and chemical bases of egg discrimination in communally nesting greater anis Crotophaga major

The eggshells of communally breeding greater anis Crotophaga major consist of a blue‐green pigmented calcite matrix overlaid by a chalky white layer of vaterite, both of which are polymorphs of calcium carbonate. The white vaterite layer is intact in freshly laid eggs and may function in protecting the eggs from mechanical damage, but it also abrades during incubation to reveal the blue calcite shell underneath. Previous research has shown that this color change serves a visual signaling function: nesting greater anis can discriminate between eggs that are freshly laid and those that have already been incubated, which allows them to reject asynchronous eggs laid by extra‐group parasites. Here we use avian visual modeling and pigment extraction to assess the perceptual and chemical bases of such egg recognition. We found that there was no overlap between the avian perceptual space occupied by ani eggshells with and without vaterite, and that vaterite lacked both of the pigments found in the eggshell's calcite matrix, bililverdin and protoporphyrin. The visual contrast between the unpigmented vaterite and the blue‐pigmented calcite appears to pre‐date the evolution of the signaling function, since the related guira cuckoo Guira guira, also a communal breeder, lays similarly structured and pigmented eggs but does not use the visual contrast as a signal to detect parasitism.     

Precipitation of calcium carbonate byDeleya halophila in media containing NaCl as sole salt

The precipitation of calcium carbonate by 27 strains ofDeleya halophila using solid and liquid media containing different NaCl concentrations (2.5, 7.5, or 20%, wt/vol) as sole salt, and two incubation temperatures (22° and 32°C) have been studied. All the strains tested were able to precipitate calcium carbonate under the different environmental conditions assayed. Crystals formed were calcite and vaterite; the ratio of calcite to vaterite was dependent on total salts and on the type of medium.     

A rare mineral,vaterite, acts as a shock absorber in the eggshell of a communally nesting bird

Birds’ eggshells are primarily composed of calcite, an abundant polymorph of calcium carbonate (CaCO₃). However, the eggshells of some species are coated with spherules of vaterite, a rare and thermodynamically unstable polymorph of CaCO₃, the function of which remains unknown. We experimentally tested the mechanical and physiological effects of the vaterite coating on eggshells of the Greater Ani Crotophaga major, a tropical cuckoo. Vaterite removal did not affect vapour conductance rates across the eggshell, indicating that the vaterite coating does not influence gas exchange during embryonic development. However, nanoindentation revealed that the hardness and elasticity of vaterite is similar to that of calcite, and white light interferometry showed that the vaterite layer increased the total thickness of the shell cuticle by up to 10%. Furthermore, calculations of contact mechanics found that when two eggs come into contact, the depth of the surface deformation caused by the contact is far less than the thickness of the vaterite coating. These results suggest that the layer of vaterite spherules may act as a shock absorber for the underlying calcite shell, protecting it from mechanical damage caused by collision with other eggs in the nest and reducing the risk of eggshell fracture during incubation.     

Vaterite Otoliths from the Opah,Lampris immaculatus,and Two Species of Sunfish,Mola mola and M. ramsayi

The cosmopolitan opah Lampris immaculatus (also known as the moonfish or mariposa) occurs commonly in New Zealand waters. The otoliths of 23 individuals were examined by light microscopy. All three of the otoliths of the endolymphatic sac of the opah have the characteristic appearance of the Stolkowski crystal form of the vaterite morph of calcium carbonate. Five randomly chosen pairs of asterici and sagittae and two lapilli otoliths were shown by X-ray diffraction to be composed of vaterite. In addition to their mineral composition, the sagitta and astericus of the opah present an unusual combination of anatomical features found in both what are generally regarded as primitive and as advanced fish. Vaterite otoliths also occur in the sunfish Mola mola and M. ramsayi, but with a different crystalline habit to that found in the opah, and in a distinctively different anatomical arrangement of the endolymphatic sac. It is argued that, based on their otolith mineralogy and morphology, the opah and the sunfish are each side of one of the biochemical and anatomical boundaries involved in the separation of the teleosts from other actinopterygian fish (sturgeons, paddle fish, gars and bowfins).     

Scanning Electron Microscopy and X-ray Diffraction Studies of the Macular Crystals in the Chondrostean Fish Erpetoichthys calabaricus (Smith)

Morphologic and crystallographic studies of the otoliths of the reed-fish Erpetoichthys calabaricus showed (1) aragonite statoliths with a serrated surface, and (2) two populations of statoconia: one of numerous discoid biconvex crystals of vaterite, the other of pseudohexagonal crystals of aragonite. We suggest that the presence of two calcium carbonate polymorphs in the statoacoustic organs of this archaic fish may have an evolutionary, as well as a systematic and functional significance.     

Amplification of sequence tagged sites in five avian species using heterologous oligonucleotides

Short of a complete genomic DNA sequence, sequence tagged sites (STSs) have emerged as major genomic reagents for the genetic analysis of little-studied ecologically and agriculturally important organisms. Here, we report STS developed for the turkey (Meleagris gallopavo), guinea fowl (Numidea meleagris), Japanese quail (Coturnix coturnix) and pigeon using primers specific for reference DNA sequences of two chicken (Gallus gallus) genes, aggrecan (agc1) and type X collagen (col10). Additional STSs were also developed for turkey, quail and chicken using primers specific for the human apobec-1 gene. The total length of the STSs developed was 5990, 2522, 4127, 1539 and 6600 bp for the turkey, guinea fowl, Japanese quail, pigeon and chicken, respectively. Based on splice site consensus GT and AG sequences, four of the seven agc1-based chicken STS appear to contain introns. The human gene-based STSs showed no significant sequence identity with the reference GenBank sequences. Maximum likelihood, maximum parsimony and neighbour-joining analysis of an agc1-based STS that was common to all five species showed phylogenetic relationships consistent with those previously defined using mitochondria DNA sequences and nuclear gene restriction maps. Additionally, several putative single nucleotide polymorphisms (SNPs) were detected within the STSs, including eight in the turkey, two in the quail, and two in the chicken when multiple sequences were evaluated from each species. This report describes new STSs that are resources for genetic and physical mapping and genome analysis within and among avian species. These resources should further aid in our understanding of the biology of agriculturally important but little-studied guinea fowl and turkey. This revised version was published online in July 2006 with corrections to the Cover Date.     

Antimicrobial activity of the Anseriform outer eggshell and cuticle

The avian eggshell is a complex, multifunctional biomineral composed of a calcium carbonate mineral phase and an organic phase of lipids and proteins. The outermost layer of the eggshell, the eggshell cuticle, is an organic layer of variable thickness composed of polysaccharides, hydroxyapatite crystals, lipids and glycoprotein. In addition to regulating gas exchanges, the eggshell cuticle may contain antimicrobial elements. In this study, we investigated the antimicrobial activity of eggshell cuticle and outer eggshell protein extracts from four Anseriform species: wood duck (Aix sponsa), hooded merganser (Lophodytes cucullatus), Canada goose (Branta canadensis) and mute swan (Cygnus olor). Cuticle and outer eggshell protein was extracted by urea or HCl treatment of eggs. C-type lysozyme, ovotransferrin and an ovocalyxin-32-like protein were detected in all extracts. Cuticle and outer eggshell protein extracts inhibited the growth of Staphylococcus aureus, Escherichia coli D31, Pseudomonas aeruginosa and Bacillus subtilis. The presence of active antimicrobial proteins within the avian cuticle and outer eggshell suggests a role in antimicrobial defense. Protein extracts from the cavity nesting hooded merganser were especially potent. The unique environmental pressures exerted on cavity-nesting species may have led to the evolution of potent antimicrobial defenses.     

Separate and combined effects of temperature and hypoxia on breathing pattern in the domestic fowl

Summary Minute ventilation (V _E), tidal volume (V _T), respiratory frequency (f) and clavicular air sac gas composition were measured in conscious domestic fowl breathing air and hypoxic gas mixtures at neutral (18±1°C) and raised (33±1°C) air temperatures. Increases inV _E caused by inhalation of 10%, 8% or 6.5% O₂ in N₂, respectively, were independent of temperature although at each level the absoluteV _E was ca. 21·min⁻¹ greater in the panting birds. Changes in respiratory pattern during hypoxia were markedly dependent on temperature. At 18°C almost all of the increasedV _E resulted from increasedf. At 33°C hypoxia led to a strong suppression off and increase inV _T. It is concluded that hyperthermia and hypoxia are additive and non-interactive in their effects on ventilatory drive, in agreement with previously reported effects of hypercapnia and physical exercise on breathing in panting fowl.     

Crystalline otoliths in teleosts: Comparisons between hatchery and wild coho salmon (<Emphasis Type="Italic">Oncorhynchus kisutch</Emphasis>) in the Strait of Georgia

Otoliths, or ‘ear stones’, are calcium carbonate structures found in all vertebrates. In teleosts, they have a number of sensory functions, including hearing. Daily growth increments of these structures have permitted advanced age and population studies of teleosts. Whereas ‘normal’ otoliths are composed of crystals imbedded within a protein matrix as aragonite, a ‘crystalline’ form of calcium carbonate termed vaterite is also found. A review of the otolith literature demonstrates a significant level of understanding of the structure and function of otoliths, but the cause for crystalline otolith structure remains speculative. Pairs of otoliths from hatchery and wild juvenile and adult coho salmon (Oncorhynchus kisutch) were examined visually for determination of otolith microstructure type. The vateritic or crystalline otoliths were found in much higher percentages in juvenile hatchery-reared coho salmon than in juvenile wild coho salmon, supporting previous studies. There did not seem to be any negative impact on size or survival. There was also no correlation between crystalline otoliths and premature maturation in coho males. A preliminary study of adult coho salmon returning to Big Qualicum and Chilliwack hatcheries showed even higher ratios of vateritic otoliths than observed in juveniles.     

Frequency of vateritic otoliths and potential consequences for marine survival in hatchery-reared Atlantic salmon

Otoliths are inner-ear structures of all teleost fish with functional importance for hearing and balance. The otoliths usually consist of aragonite, a polymorph of calcium carbonate, but may also take the form partly or entirely of vaterite, a different polymorph of calcium carbonate. Vateritic otoliths occur sporadically in wild fish, but with a higher frequency in hatchery-reared fish. Abnormal otoliths have direct consequences for the inner-ear functions of fish and may be a symptom of environmental stress. In this study, the authors assess the differences in the frequency of abnormal otoliths and degree of abnormality (% vaterite) for different groups of hatchery-reared Atlantic salmon (Salmo salar) smolt and adults. The groups differed in parental broodstock origin (number of generations in hatchery) and treatment temperature. Smolt from the same groups were also released to complete their ocean migration. The otoliths of the returning and recaptured adults were subsequently extracted to assess the difference in frequency and degree of abnormality between the adults and the smolt from corresponding groups. Return rate varied among groups (0.2%–2.6%). The frequency of vateritic otoliths was high (11.4%–64.4%) and differed among smolt groups. The lowest return rates corresponded with the highest frequency of abnormal otoliths for the groups, suggesting that abnormal otoliths may have negative consequences for marine survival. Furthermore, indications of an effect of fast growth on the formation of abnormal otoliths were found for only one of the experimental groups, and for none of the groups after correcting for Type 1 error. This contradicts previous reports, suggesting rapid growth as the main cause of abnormal otoliths. Adult return rates were generally low, but abnormal otoliths were common, with high coverage (% vaterite).     

Experimental Histomoniasis in the Guinea Fowl,Numida meleagris*

Guinea fowl were inoculated rectally with Histomonas meleagridis to produce histomoniasis. The birds were infected readily by this unnatural route. Severe cecal involvement was frequent and long-lasting but liver lesions and death were rare. Turkeys given the same inoculum had high levels of liver involvement and mortality. Guinea fowl responded much less severely to infection with H. meleagridis when infected by a natural route (ingestion of a vector) rather than by rectal inoculation. Thus, naturally acquired infections with H. meleagridis appear to be of small consequence in the guinea fowl.     

Exposure to thyroid hormone in ovo affects otolith crystallization in rainbow trout Oncorhynchus mykiss

Calcareous otoliths in the inner ears of fishes are necessary for proper hearing and vestibular function. Sagittal otoliths are usually composed of the calcium carbonate polymorph aragonite but may contain the polymorph vaterite, a phenomenon called otolith crystallization. The causes of otolith crystallization are poorly understood. Thyroid hormone (TH) can influence the chemical microenvironment and structure of the inner ear, suggesting that TH may influence otolith crystallization. The present study examined the effect of exogenous TH treatment on sagittal otolith crystallization and growth in larval and juvenile rainbow trout, Oncorhynchus mykiss. In the first experiment, 110?C179?day-old fish raised from TH-treated oocytes had significantly fewer sagittal otoliths containing the crystalline calcium carbonate polymorph vaterite as compared to untreated fish. Vaterite-containing otoliths were significantly longer than those containing the typical polymorph aragonite, although there was no effect of TH treatment on otolith length. In the second experiment, juveniles immersed in an exogenous solution of TH for 6?weeks had slightly longer otoliths (relative to fish length) than age-matched controls, but this effect was not significant. This juvenile population had a very high percentage (88.3?%) of vaterite sagittae overall and this percentage did not change significantly with treatment, suggesting the switch from aragonite to vaterite occurred prior to inclusion of the fish in the study. These results suggest that early manipulation of TH levels may affect calcium carbonate deposition on the otolith but that later TH exposure is unable to restore typical otolith composition.     

Significance of <Emphasis Type="Italic">Halimeda</Emphasis> bioherms to the global carbonate budget based on a geological sediment budget for the Northern Great Barrier Reef,Australia

Since the correlation between carbon dioxide (CO₂) levels and global temperatures was established in the ice core records, quantifying the components of the global carbon cycle has become a priority with a view to constraining models of the climate system. The marine carbonate budget is still not adequately constrained and the quantitative significance of the calcareous green alga Halimeda still remains particularly poorly understood. Previously, it has been suggested that Halimeda bioherms on the shelf of the Great Barrier Reef may contain a volume of carbonate equal to or greater than that contained within the shelf edge coral reefs. This study uses published datasets to test this hypothesis in the Northern Great Barrier Reef (NGBR) province. It is estimated that Halimeda bioherms on the outer shelf of the NGBR contain at least as much (and up to four times more) CaCO₃ sediment as the adjacent ribbon reef facies. Globally, if these findings are even only partially applicable, the contribution of shallow water carbonate sediments to the global carbon budget based on coral reefs alone is currently substantially underestimated.     

Eimeria diminuta sp. n. from the Ceylon Jungle Fowl,Callus lafayettei*

SYNOPSIS. Eimeria diminuta sp. n. is described from the Ceylon jungle fowl Gallus lafayettei. Its sporulated oocysts are 16.5 (16–17.5) × 14.5 (13.5 × 15.5) μm. The species produces patent infections in domestic fowl.     

The development of thermoregulation in turkey and guinea fowl hatchlings: similarities and differences

The development of thermoregulation was studied in turkeys (Meleagris gallopavo, 60.5 g) and guinea fowl (Numida meleagris, 33.5 g) from 2 to 24 h after hatching. Thermoregulation was measured at different ages during 1 h of cold exposure (20°C). Final body temperature rose linearly with age in turkeys, but reached a plateau in guinea fowl between 12 and 16 h. At 2 h after hatch final body temperature was highest in guinea fowl, while at 24 h after hatch there was no difference between the species. The development of mass-specific metabolic rate with age resembled the pattern of final body temperature. At 2 h post-hatch mass-specific metabolic rate was highest in guinea fowl; however, at 24 h post-hatch there was no difference between the species. since mass-specific metabolic rate reached a plateau in guinea fowl at 16 h. In turkeys mass-specific dry thermal conductance decreased with age initially, while in guinea fowl it remained stable. Nevertheless, at both 2 and 24 h after hatch mass-specific wet conductance did not differ significantly between the species. In turkeys mass-specific wet conductance increased initially. This increase in mass-specific wet conductance may be due to the rapid onset of feather growth in turkeys. The O₂ consumption per breath doubled during the first 24 h in turkeys but remained stable in guine fowl. This suggests that at least two different developmental patterns of O₂ intake exist within Galliformes. The results show that 2 h post-hatch the thermoregulatory ability was lowest in turkeys, despite their larger body mass. However, at 24 h post-hatch the difference between the species was not significant, because the thermoregulatory ability had increased more in turkeys.Abbreviations B _f breathing frequency - BM body mass - BMR basal metabolic rate - C _D mass-specific dry thermal conductance - C _w mass-specific wet thermal conductance - HI homeothermy index - H _E evaporative heat loss - H _B loss of stored body heat - MR metabolic rate - M _MS mass-specific metabolic rate - RH relative humidity - I _A ambient temperature - T _Bi initial body temperature - T _Bf final body temperature - VO₂ volume oxygen consumed - VCO₂ volume carbon dioxide produced     

A guinea fowl genome assembly provides new evidence on evolution following domestication and selection in galliformes

The helmeted guinea fowl Numida meleagris belongs to the order Galliformes. Its natural range includes a large part of sub‐Saharan Africa, from Senegal to Eritrea and from Chad to South Africa. Archaeozoological and artistic evidence suggest domestication of this species may have occurred about 2,000 years BP in Mali and Sudan primarily as a food resource, although villagers also benefit from its capacity to give loud alarm calls in case of danger, of its ability to consume parasites such as ticks and to hunt snakes, thus suggesting its domestication may have resulted from a commensal association process. Today, it is still farmed in Africa, mainly as a traditional village poultry, and is also bred more intensively in other countries, mainly France and Italy. The lack of available molecular genetic markers has limited the genetic studies conducted to date on guinea fowl. We present here a first‐generation whole‐genome sequence draft assembly used as a reference for a study by a Pool‐seq approach of wild and domestic populations from Europe and Africa. We show that the domestic populations share a higher genetic similarity between each other than they do to wild populations living in the same geographical area. Several genomic regions showing selection signatures putatively related to domestication or importation to Europe were detected, containing candidate genes, most notably EDNRB2, possibly explaining losses in plumage coloration phenotypes in domesticated populations.     

Characterization of the exoskeleton of the Antarctic king crab Paralomis birsteini

Ocean acidification is projected to inhibit the biogenic production of calcium carbonate skeletons in marine organisms. Antarctic waters represent a natural environment in which to examine the long‐term effects of carbonate undersaturation on calcification in marine predators. King crabs (Decapoda: Anomura: Lithodidae), which currently inhabit the undersaturated environment of the continental slope off Antarctica, are potential invasives on the Antarctic shelf as oceanic temperatures rise. Here, we describe the chemical, physical, and mechanical properties of the exoskeleton of the deep‐water Antarctic lithodid Paralomis birsteini and compare our measurements with two decapod species from shallow water at lower latitudes, Callinectes sapidus (Brachyura: Portunidae) and Cancer borealis (Brachyura: Cancridae). In Paralomis birsteini, crabs deposit proportionally more calcium carbonate in their predatory chelae than their protective carapaces, compared with the other two crab species. When exoskeleton thickness and microhardness were compared between the chelae and carapace, the magnitude of the difference between these body regions was significantly greater in P. birsteini than in the other species tested. Hence, there appeared to be a greater disparity in P. birsteini in overall investment in calcium carbonate structures among regions of the exoskeleton. The imperatives of prey consumption and predator avoidance may be influencing the deposition of calcium to different parts of the exoskeleton in lithodids living in an environment undersaturated with respect to calcium carbonate.     

Influence of long-term climatic changes on breeding of the Chilean flamingo in Mar Chiquita,Córdoba,Argentina

We report a comparative analysis of the environmental conditions prevailing at each successful breeding event of the Chilean flamingo (Phoenicoptarus chilensis) during the 1969–2010 period in Mar Chiquita, a large salt lake near Córdoba, Argentina. Breeding was monitored annually by air. The following parameters were measured: rainfall, water level water salinity, availability of shoreline and offshore (islands) mudflats, presence of brine shrimp (Artemia franciscana), and presence of the Argentine silverside fish (Odonthotestes bonariensis). During the study period, Mar Chiquita underwent great variations in level, reaching the highest level in its geological history. Salinity ranged from 274 down to 22 g l⁻¹. Artemia was present during the high-salinity periods and was absent when salinity dropped below 55 g l⁻¹, and the lake was invaded by the silverside. Flamingos bred irregularly during both high- and low-salinity periods (11 successful attempts in 42 years). Comparison of breeding and non-breeding years showed that the only environmental factor always associated with breeding events was availability of mudflats, mostly bordering islands. Water level increases over 0.90 m during the breeding season may flood the nesting areas and affect breeding success. Rapid decreases in lake level may also affect breeding by favoring predation or via nutrient availability. Other factors (water level, water salinity, local rainfall, and presence of Artemia and silverside) were within similar ranges in breeding and non-breeding years. Our surveys provided indirect evidence suggesting that food availability may influence flamingo breeding in Mar Chiquita. Management implications of our study include: (a) habitat suitability analysis of wetlands like Mar Chiquita should consider that availability of offshore mudflats free of vertebrate predators is an essential requirement for flamingo conservation and (b) drastic and rapid increases or decreases in water level due to human control of river inflows may affect chances of successful flamingo breeding and therefore should be evaluated carefully.     

Stromatoporoid palaeoecology in the Frasnian (Upper Devonian) Belgian platform,and its applications in interpretation of carbonate platform environments

Abstract: Stromatoporoid faunas in the Frasnian of southern Belgium are abundant in the carbonate platform environments present in this area. Stromatoporoids dominate the large skeletal organisms and occur principally in biostromes. The stromatoporoid assemblage is represented by a small number of taxa. Stromatoporoid genera include Actinostroma, Amphipora, Atelodictyon, Clathrocoilona, Salairella, Stachyodes, Stictostroma, Stromatopora and Trupetostroma which are present in environments ranging from the outer, outer intermediate, inner intermediate and inner zones and associated biostromes. Most large skeletal stromatoporoids are low profile, which reinforces the conclusions of previous studies that low‐profile growth forms were the most successful stromatoporoid forms. These low‐profile forms are likely to have been important sediment stabilisers that may have led to expansion of the carbonate factory. Growth forms vary between facies, indicating some degree of environmental control on form; for example, laminar in the intermediate zone, bulbous and domical in the inner and outer zones. Stromatoporoid taxa vary in occurrence across the environmental gradient from shallow to deep. There is some taxonomic control on growth forms, with some taxa showing more variability than others in different environments.     

Excess nuclear DNA in spermatozoa of guinea fowl

The proportion of spermatozoa with elongated nuclei in ejaculates from a strain of guinea fowl was estimated, subjectively, to range from approximately 1 to 6%. It was confirmed by image analysis that in an ejaculate from one male, the distribution of nuclear lengths was bimodal, with a distinct population comprising 10% of spermatozoa having a mean nuclear length that was 52% greater than that of the remaining 90%. Furthermore, the mean DNA content of the 'large-nuclei' population was 1.85 times (not significantly different from twice) that of the main sperm population. The proportion of large-nuclei spermatozoa that was motile was less than that of normal sperm (31% versus 59%) and the velocity of motile spermatozoa was also less (24 microm/s versus 72 microm/s). The poor motility of the large-nuclei spermatozoa in vitro was reflected in their limited performance in vivo, since only 1.1% were found associated with the egg outer perivitelline layer. This is the first report to quantify the occurrence of, presumed, polyploid spermatozoa in a domestic bird. The incidence of such spermatozoa in commercial guinea fowl and other domestic poultry and the genesis and effects on fertility of such spermatozoa may be significant.