Atomic force microscopy fishing of GP120 on immobilized aptamers and its mass spectrometry identification

A method of atomic force microscopy-based fishing (AFM fishing) has been developed for protein detection in the analyte solution using a chip with an immobilized aptamer. This method is based on the biospecific fishing of a target protein from a bulk solution onto the small AFM chip area with the immobilized aptamer to this protein used as the molecular probe. Such aptamer-based approach allows to increase an AFM image contrast compared to the antibody-based approach. Mass spectrometry analysis used after the biospecific fishing to identify the target protein on the AFM chip has proved complex formation. Use of the AFM chip with the immobilized aptamer avoids interference of the antibody and target protein peaks in a mass spectrum.     

Factorial analysis of an experimental comparison of three methods of fishing for rainbow trout, Salmo gairdneri Richardson, in still water

A three day experiment compared angling returns for rainbow trout, Salmo gairdneri Richardson, using fly, spinner and worm fishing methods. The catches of these methods were most similar on the first day: 3.36/h, 2.61/h and 3.75/h for spinner, fly and worm fishing, respectively. Catch rates on subsequent days declined, but less so for worm fishing. Overall, the worm fishing method returned the highest catch rate and estimates of catch rates for a year on a trout fishery also indicated that this method returned the highest catch rate.     

The Dynamics of a Fish Stock Exploited in Two Fishing Zones

This work presents a specific stock-effort dynamical model. The stocks correspond to two populations of fish moving and growing between two fishery zones. They are harvested by two different fleets. The effort represents the number of fishing boats of the two fleets that operate in the two fishing zones. The bioeconomical model is a set of four ODE's governing the fishing efforts and the stocks in the two fishing areas. Furthermore, the migration of the fish between the two patches is assumed to be faster than the growth of the harvested stock. The displacement of the fleets is also faster than the variation in the number of fishing boats resulting from the investment of the fishing income. So, there are two time scales: a fast one corresponding to the migration between the two patches, and a slow time scale corresponding to growth. We use aggregation methods that allow us to reduce the dimension of the model and to obtain an aggregated model for the total fishing effort and fish stock of the two fishing zones. The mathematical analysis of the model is shown. Under some conditions, we obtain a stable equilibrium, which is a desired situation, as it leads to a sustainable harvesting equilibrium, keeping the stock at exploitable densities.     

Strong direct and inconsistent indirect effects of fishing found using stereo-video: Testing indicators from fisheries closures

Candidate indicators of the direct and indirect effects of fishing can be developed by investigating fisheries closures. We tested a suite of such indicators in areas open to fishing but with suspected differences in effort, using baited remote underwater stereo-video methods. In particular, we predicted that greater fishing would result in decreased biomass of high risk target species and indirectly increase the biomass of small-bodied non-target species. As predicted, the biomass of target species was found to be greater in areas of lower fishing effort and in deeper waters. However, no indirect effects of fishing were detected and any community-level effects were driven by differences in the biomass of target species. In particular, assemblage length class analysis of covariance (ANCOVA), size spectra analysis and the abundance-biomass comparison (ABC) method did not provide any evidence of indirect effects of fishing. The magnitude of the differences in fishing effort between the two areas sampled, may be sufficient to significantly affect target fisheries species, but insufficient to lead to indirect effects on non-target populations. It is also possible that the predicted indirect effects do not occur in this assemblage, due to weak trophic linkages between species. Differences observed using the ABC method were attributed to variation in the abundance of large herbivorous fishes, which are not fished. We also found assemblage length class ANCOVA and size spectra to be insensitive to the direct effects of fishing where large numbers of non-target individuals are sampled along with fished species. We suggest diet studies and comparisons across stronger gradients in fishing pressure to further investigate the indirect effects of fishing in this assemblage.     

Flow cytometric enumeration of absolute lymphocyte number in peripheral blood using two parameters of light scatter

A method was developed to measure the absolute lymphocyte count (ALC) of whole blood using the Spectrum III automated flow cytometer. Ninety-nine samples of human peripheral blood were analysed on the Spectrum and the Coulter Counter S Plus II, to allow for comparison of the two machines. Regression analysis was used to test the extent of agreement between the sets of measurements on the two machines. The results demonstrated that the slope of the regression line was not significantly different from one, indicating a high level of correlation between Spectrum and Coulter ALC's. However, the mean difference between Coulter and Spectrum ALC's was not equal to zero, with the Spectrum giving counts approximately 10% lower than those of the Coulter machine. This is attributed to the different ways by which the two machines define a lymphocyte, the Spectrum III by two parameters of light scatter and the Coulter S Plus II by the single parameter of cell volume.     

Using rapid assessment and demographic methods to evaluate the effects of fishing on Heterodontus portusjacksoni off far-eastern Victoria, Australia

A rapid semi-quantitative ecological risk assessment method (productivity and susceptibility analysis) indicated that, despite its low biological productivity, the Port Jackson shark Heterodontus portusjacksoni is at low risk to all fishing methods in far-eastern Victoria, Australia, under the present fishing practices, because of its low catch susceptibility. The risk to this population, however, would increase if the shark gillnet fishery operating in the region were to retain the species as a by-product. Demographic analysis indicated that the species has medium intrinsic population growth rate and potential rebound in comparison with other chondrichthyan species, juveniles have higher elasticity than mature females and both juvenile and mature females have higher elasticities than hatchlings. Because of its low biological productivity and moderate resilience to the effects of fishing, cautious management measures will be necessary to ensure the sustainable use of H. portusjacksoni if its marketing increases in the future. Information on the dynamics of a population that is valuable to provide management advice can be obtained through demographic methods, but rapid assessment methods can also provide complementary information on the effects of fishing by considering the catch susceptibility of the population to each fishing method.     

Rapid data collection and assessment of the biology of Acanthurus nigrofuscus at Woleai Atoll, Micronesia

Traditional community fishing methods commonly employed in the tropical Pacific were used to generate information on the fishery biology of Acanthurus nigrofuscus at Woleai Atoll, Micronesia, over a short time period. A simple depletion model was used to estimate the biomass of A. nigrofuscus at four back reef lagoon sites at Woleai, using two different fishing methods; spear fishing and drive-in-net fishing. The mean biomass and density of A. nigrofuscus on the lagoon reefs was 8000 g ha ⁻¹ and 183 fish ha ⁻¹ respectively, with a total estimated standing stock for the lagoon of 91 500 fish or a biomass of 4·0 t. The size frequencies of fish caught by spear fishing were biased towards larger sized individuals, while those from drive-in-net fishing were thought to be more representative of the true population size frequencies. Variation in the density and biomass of A. nigrofuscus at the four reef sites was thought to be due to the length of time between episodes of community fishing at each reef site. The sex ratio (male: female) of A. nigrofuscus was significantly different from unity (1: 0·47) and males grew larger than females. Sexually mature fish were present in all size classes above the minimum capture length and spawning activity was greatest during the period of the full moon.     

A nonlinear optimization model for fishing vessel evacuation during typhoon emergencies

We present an optimization model for fishing vessel evacuation during typhoon emergencies. Typhoon forecasts often do not accurately predict the typhoon path, so a risk assessment method is developed to evaluate the risk of fishing vessel evacuation processes. Risk assessment is the objective function of the fishing vessel evacuation optimization model. The model used is a many-to-many nonlinear assignment problem. A hybrid closed loop algorithm is used and its efficiency exceeds the traditional algorithm. The model is tested on a typhoon scenario based on harbors' distribution in Zhejiang Province, China.     

南极半岛北部南极磷虾渔业空间点格局特征

南极磷虾作为南极生态系统中的关键物种,在空间分布上常表现出集群特征.这也反映到磷虾渔业生产的空间格局特征上.为了探讨捕捞能力有明显差异的船队在高/低单位捕捞努力量渔获量(CPUE)的情况下空间点分布格局特征及其生态学效应,基于南极半岛北部海域的两艘中国南极磷虾渔船(船A为专业南极磷虾渔船,船B为在智利竹筴鱼渔场与南极磷虾渔场转换的兼作渔船)的磷虾渔业数据,从空间点格局的角度出发,分别从两船的高、低CPUE的空间点格局在不同尺度上聚集特征,高、低CPUE在不同尺度上的二元点格局相关关系,以及CPUE点标记格局下的相关性关系等3个方面进行了分析.Ripley的L函数和标记相关函数分析结果表明: 研究对象在空间窗口所有尺度上的空间格局均表现为聚集性,高、低CPUE下均有聚集发生;在15 km尺度上,聚集强度近最大,在15~50 km尺度下,聚集程度稳定;总体上点格局分布的聚集强度依次为:船A高CPUE>船B低CPUE>船B高CPUE>船A低CPUE.船A高、低CPUE在0~75 km尺度上为正相关关系,在大于75 km尺度上为随机关系;船B在所有尺度上的高、低CPUE均为正相关,说明了低CPUE点事件伴随高CPUE的点事件同步发生,两者在大部分尺度下均显著相关.这是磷虾集群模式的动态性和复杂性造成.船A各点的CPUE值在0~44 km尺度上呈正相关,在44~80 km尺度上呈负相关;船B各点的CPUE值在50~70 km尺度上呈负相关,在其他尺度上无显著相关性;正相关反映了磷虾密集集群的种群分布特性,而负相关表明了磷虾群间由于食物和空间原因存在一定的竞争关系.捕捞能力强的船A和捕捞能力较弱的船B在点格局分布上存在较大差异.专业南极磷虾渔船更适于开展磷虾作业空间点格局分析及相关科学调查工作.     

The state of exploitation of the commercial demersal fishery of Cameroon

The state of exploitation of the demersal fisheries resources of Cameroon has been assessed using the classic Schaefer's (1954) model and the Gulland'ss (1961) moving average. The euilibrium yield found with the Schaefer method is statistically different (95 % probability) and higher than the Gulland approach. Because equilibrium models consistently over-estimate MSY and its related optimum effort, management option should target the 95 % value of the estimated parameters. The resources are being over-fished; as an immediate alternative to the urgent concern, catch and/or effort quotas could be allocated to the various fishing companies, with the total allocated catch and/or effort (for all fishing companies) 5% less than the estimated parameters. Enforcement control of that policy would be simplified as fishing activities are localised in the two main estuaries of the “Cameroon River” and Riodel-Rey;results should be complemented by economic studies of the fishery, as these economic factors would explain or better predict the behaviour of the fishing industry.     

Exploitation and habitat degradation as agents of change within coral reef fish communities

Over‐exploitation and habitat degradation are the two major drivers of global environmental change and are responsible for local extinctions and declining ecosystem services. Here we compare the top‐down effect of exploitation by fishing with the bottom‐up influence of habitat loss on fish communities in the most diverse of ecological systems, coral reefs. Using a combination of multivariate techniques and path analyses, we illustrate that the relative importance of coral cover and fishing in controlling fish abundance on remote Fijian reefs varies between species and functional groups. A decline in branching Acropora coral is strongly associated with a decline in abundance of coral‐feeding species, and a decrease in coral‐associated habitat complexity, which has indirectly contributed to reduced abundance of small‐bodied damselfish. In contrast, reduced fishing pressure, brought about by declining human populations and a shift to alternate livelihoods, is associated with increased abundance of some piscivores and fisheries target species. However, availability of prey is controlled by coral‐associated habitat complexity and appears to be a more important driver of total piscivore abundance compared with fishing pressure. Effects of both fishing and coral loss are stronger on individual species than functional groups, as variation in the relative importance of fishing or coral loss among species within the same functional group attenuated the impact of either of these potential drivers at the functional level. Overall, fishing continues to have an influence on Fijian fish communities; however, habitat loss is currently the overriding agent of change. The importance of coral loss mediated by climate change is expected to have an increasing contribution to fish community dynamics, particularly in remote locations or where the influence of fishing is waning.     

Fishery-induced changes in a marine ecosystem: insight from models of the Gulf of Thailand

Two mass-balance trophic models are constructed to describe the Gulf of Thailand ecosystem (10–50 m depth): one model pertains to the initial phase of fisheries development, and the other to when the resources were severely depleted. The two phases are compared, and changes brought about by fishing discussed. A dynamic simulation model, Ecosim, is then used successfully to reproduce the 1980 state of the fishery based on the 1963 model and the development in catches. In addition the 1980 model is used to predict how the ecosystem groups may bounce back following marked reduction in fishing pressure. Finally, the 1963 model is used to study alternative scenarios for how the fisheries development could take place, notably the effect of exploiting only the resources of larger species. The study validates that the Ecosim model can be used to predict ecosystem level changes following changes in fishing pressure, therefore fishing induced changes can to a large extent explain the changes in ecosystem pools and fluxes observed over time.     

The stabilizability of a controlled system describing the dynamics of a fishery

This work presents two stock-effort dynamical models describing the evolution of a fish population growing and moving between two fishing zones, on which it is harvested by a fishing fleet, distributed on the two zones. The first model corresponds to the case of constant displacement rates of the fishing effort, and the second one to fish stock-dependent displacement rates. In equations of the fishing efforts, a control function is introduced as the proportion of the revenue to be invested, for each fleet. The stabilizability analysis of the aggregated model, in the neighborhood of the equilibrium point, enables the determination of a Lyapunov function, which ensures the existence of a stabilizing discontinuous feedback for this model. This enables us to control the system and to lead, in an uniform way, any solution of this system towards this desired equilibrium point.     

Quantification of catch composition in fisheries: A methodology and its application to compare biodegradable and nylon gillnets

When evaluating fishing gear catches, the focus is often on a few species as opposed to the entire catch. In some fisheries this can lead to ignoring major part of catch composition. Thus, there is a need for a more holistic approach when evaluating the ecological impact of using a specific fishing gear and when comparing two or more gears. In this context, it is relevant to have a method that describes the total catch and quantifies proportions of the catch being wanted and unwanted. In this study, we outline such a method and demonstrate its applicability to catch data from a small-scale coastal gillnet fishery targeting European plaice (Pleuronectes platessa, Linnaeus, 1758) by comparing catch composition when using nylon and biodegradable gillnets. The results showed no significant differences in catch composition between gillnets made of the two materials. Therefore, the catch composition obtained using the more environmentally friendly biodegradable materials does not represent a barrier in this specific gillnet fishery. However, species selectivity of gillnets is still of concern as the primary target species constituted only half of the total catch composition in numbers while the rest was unwanted catch. The presented approach for quantifying and inferring the differences in catch composition can be further applied for assessing the performance of different fishing gears and their modifications.     

Technical efficiency of small-scale fishing households in Tanzanian coastal villages: an empirical analysis

The effort to conserve fisheries resources and improve the welfare of small-scale fishing households is an important objective of poverty reduction strategies in Tanzania. The success of such strategies depends on both the diversity and the level of efficiency within small-scale fishing households. This paper examines the technical efficiency of Tanzanian small-scale fishing households, based on data from two coastal villages located near Bagamoyo and Zanzibar, using a stochastic frontier model with technical inefficiency. The estimated mean technical efficiency of small-scale fishing households was 52%, showing that they were operating far below optimum efficiency. The efficiency of individual fishing households was positively associated with fishing experience, size of farming land, distance to the fishing ground and potential market integration; it was negatively related to non-farm employment and bigger household sizes. Future policies aimed at conservation and development in fishing communities should provide mechanisms that improve the access of small-scale fishing households to less-destructive fishing tools (via the provision of credit facilities) and to markets, as well as the creation of new employment opportunities in other sectors. In addition, measures which check the use of illegal fishing gear, overcapitalisation and open-access problems should be considered.     

Cyanide fishing and cyanide detection in coral reef fish using chemical tests and biosensors

Sodium cyanide has been used in the Philippines to collect tropical marine fish for aquarium and food trades since the early 1960s. Cyanide fishing is a fast method to stun and collect fish. This practice is damaging the coral reefs irreversibly. In most countries cyanide fishing is illegal, but most of the exporting and importing countries do not have test and certificate systems. Many analytical methods are available for the detection of cyanide in environmental and biological samples. However, most of the techniques are time consuming, and some lack specificity or sensitivity. Besides, an ultra sensitive cyanide detection method is needed due to the rapid detoxification mechanisms in fish. The aim of this review is to give an overview of cyanide fishing problem in the south-east Asia and current strategies to combat this destructive practice, summarise some of the methods for cyanide detection in biological samples and their disadvantages. A novel approach to detect cyanide in marine fish tissues is briefly discussed.     

Mapping Fishing Effort through AIS Data

Several research initiatives have been undertaken to map fishing effort at high spatial resolution using the Vessel Monitoring System (VMS). An alternative to the VMS is represented by the Automatic Identification System (AIS), which in the EU became compulsory in May 2014 for all fishing vessels of length above 15 meters. The aim of this paper is to assess the uptake of the AIS in the EU fishing fleet and the feasibility of producing a map of fishing effort with high spatial and temporal resolution at European scale. After analysing a large AIS dataset for the period January-August 2014 and covering most of the EU waters, we show that AIS was adopted by around 75% of EU fishing vessels above 15 meters of length. Using the Swedish fleet as a case study, we developed a method to identify fishing activity based on the analysis of individual vessels’ speed profiles and produce a high resolution map of fishing effort based on AIS data. The method was validated using detailed logbook data and proved to be sufficiently accurate and computationally efficient to identify fishing grounds and effort in the case of trawlers, which represent the largest portion of the EU fishing fleet above 15 meters of length. Issues still to be addressed before extending the exercise to the entire EU fleet are the assessment of coverage levels of the AIS data for all EU waters and the identification of fishing activity in the case of vessels other than trawlers.     

Multi-mesh gillnets to estimate species composition and catch per unit effort of fish in a small water body in Zambia

A standard method comprising multi-mesh monofilament nylon gillnets and depth stratification, the Drottningholm method, was employed in test fishing of a small Zambian reservoir (32 ha) on eight occasions over 1 year. The catch per unit effort (cpue) from the 0–3 and 3–6 m zone was timated with benthic and pelagic nets, while in the 6–12 m zone only benthic nets were used. Results include species caught and cpue with coefficients of variation and confidence intervals, for net types and depth zones. A total of 11 species were caught, of which Burbus paludinosus , B. marequensis , Laheo cylindricus , and Oreochromis sp. dominated. Coefficients of variation did not indicate a preferable season for test fishing. During the cold season some species were not caught. The applicability of the method in estimation of species composition and cpue is discussed.     

Assessing the potential biological implications of recreational inshore fisheries on sub‐tidal fish communities of Azores (north‐east Atlantic Ocean) using catch and effort data

Recreational inshore fishing activities practiced on Faial and Pico Islands (Azorean archipelago) were surveyed between October 2004 and September 2005. Recreational inshore fishers employ three main methods of fishing (shore angling, spear fishing and intertidal collecting). The method that demanded the highest fishing effort (number of fishing operations) was shore angling, followed by intertidal collecting and spear fishing. Shore angling produced the highest diversity of catch composition (38), which is in part explained by the seven fishing techniques used by shore anglers. The estimates of annual catch were higher for shore angling than spear fishing (51·2 and 6·3 t) even though they were lower than commercial artisanal fishing (442 t). The weighted mean trophic level and vulnerability index values in the fish catch were higher for spear fishing (3·4 and 50·9) than for shore angling (3·1 and 44·5). Cumulative pressure by different recreational fishing activities was detected on species already subject to a heavy pressure from Azorean commercial fishing, and on vulnerable and top‐predator species. There are important biological and ecological implications whereby fishery managers should implement additional regulations such as prohibiting catches of the most vulnerable species.     

Responses of benthic scavengers to fishing disturbance by towed gears in different habitats

The aggregation and feeding behaviour of invertebrate scavengers in areas disturbed by trawling was investigated at three different localities. At each site a fishing disturbance was created using a commercial 4 m beam trawl and scavenger density was quantified using a light beam trawl. At one site two diver surveys were also carried out; along a line fished with a scallop dredge or a beam trawl on two separate occasions. For all experiments the fished and adjacent unfished control areas were sampled before, and at intervals after, the initial fishing disturbance. Sampling with the light beam trawl revealed that hermit crabs Pagurus bernhardus moved into areas which had been fished with a 4 m beam trawl at an experimental site near Anglesey. The density of these hermit crabs increased significantly in the fished area after fishing had taken place, but no change in density occurred in the adjacent control (unfished) area. At two other sites (Red Wharf Bay, Anglesey and a site offshore from Walney Island) there were no detectable increases in scavenger numbers in the fished areas. Furthermore, at the site near Walney Island, numbers of hermit crabs P. bernhardus, swimming crabs Liocarcinus depurator and starfish Asterias rubens actually decreased after fishing. Thus the responses of scavengers to towed fishing gears varied considerably between different communities. At Red Wharf Bay, divers observed similar responses of scavengers to both beam trawl and scallop dredge disturbance. Four predatory species were observed feeding in the fished area; starfish A. rubens, hermit crabs P. bernhardus, brittlestars Ophiura ophiura and whelks Buccinum undatum. These predators fed on damaged bivalves, echinoderms, crustaceans, whelks and polychaetes. The proportion of starfish feeding in the fished area was significantly higher after fishing had taken place. Demersal fishing activities provide food for scavengers in the form of damaged animals which are left in the tracks of the trawl or dredge. The responses of scavengers to fishing disturbance are not always manifested as a large increase in their abundance. It is clear that the magnitude of response varies between species and between habitat types.