DNA markers indicate low genetic diversity and high genetic divergence in the landlocked freshwater goby, Rhinogobius sp. YB, in the Ryukyu Archipelago, Japan

Genetic diversity and genetic divergence were investigated in the landlocked goby Rhinogobius sp. YB by analysis of seven microsatellite DNA loci and the mtDNA control region sequence, and were compared with those of the closely related amphidromous species Rhinogobius sp. DA. Samples of Rhinogobius sp. YB and Rhinogobius sp. DA were collected from seven and four rivers, respectively. All pairwise Fst tests based on microsatellite DNA showed significant genetic differences, except for one pair of populations of Rhinogobius sp. DA (P<0.00064, alpha=78). The average Nei's genetic distance was 0.616 in Rhinogobius sp. YB and 0.394 in Rhinogobius sp. DA. Forty-two haplotypes were detected in both species, and almost all Rhinogobius sp. YB populations included different haplotypes. The means of allelic richness, Ho, and He in Rhinogobius sp. YB (2.057, 0.149, and 0.156, respectively) were significantly lower than in Rhinogobius sp. DA (4.868, 0.366, and 0.403, respectively; P<0.05). The high genetic divergence and low genetic diversity in Rhinogobius sp. YB may have resulted from repeated colonizations of rivers by different founders. Efforts to conserve genetic resources should take these evolutionarily significant units (ESU) of Rhinogobius sp. YB into account. The genetic markers used in this study provide simple and highly informative indicators for Rhinogobius sp. YB population management.     

The Melithaeidae (Cnidaria: Octocorallia) of the Ryukyu Archipelago: molecular and morphological examinations

The family Melithaeidae (Octocorallia: Alcyonacea) is distributed in the West Pacific, Indian Ocean and the Red Sea. They are most abundant in warmer waters but can also be found in temperate waters. At present six genera are assigned to this family (Melithaea, Mopsella, Clathraria, Acabaria, Wrightella and Asperaxis), however overlapping characteristics make this group's taxonomic identification difficult and their relationships unclear. There are only a few reports from the Ryukyu Archipelago in southern Japan of melithaeids and most other octocorals, despite the islands being an area of high octocoral diversity. To help resolve the taxonomic confusion in this family, samples from various Ryukyu Archipelago locations were collected and DNA sequences of nuclear 28S ribosomal DNA and mitochondrial cytochrome oxidase I (COI) were obtained. Additionally, SEM micrographs of the sclerites of specimens were taken to further confirm the molecular results. Three strongly supported clades were recovered from the COI and 28S rDNA analyses, corresponding to Melithaea, Acabaria, and Mopsella, and in most cases clades were clearly related with the sclerite shape reported for each genus. These results show clearly that molecular differences are present between the three genera, and also demonstrates the strong need of other molecular markers for resolving intra-generic phylogenies. Our results provide baseline data for future studies of this octocoral family, not only on taxonomy, but also with regards to their distribution in the Ryukyu Islands.     

Commensal Leucothoidae (Crustacea, Amphipoda) of the Ryukyu Archipelago, Japan. Part II: sponge-dwellers

Commensal leucothoid amphipods have been collected from the canals of their sponge hosts throughout the Ryukyu Archipelago, Japan. Eleven new species are described in the genus Leucothoe with valuable location data and host records. An identification key to sponge-dwelling Leucothoidae of the Ryukyu Archipelago is provided.     

A systematic review of the snakes allied to Amphiesma pryeri (Boulenger) (Squamata: Golubridae) in the Ryukyu Archipelago, Japan

External characters, hemipenial morphology, karyotype, and reproductive mode were examined for the three subspecies of the endemic Ryukyu natricine, Amphiesma pryeri . Results revealed that populations of the Yaeyama Group, currently regarded as comprising a subspecies, A. p. ishigakiense , have several unique features such as the brownish ground colour of head, termination of sulcus spermaticus in the crotch between apical lobes of the hemipenis, terminal location of centromeres in the largest microchromosome pair, and the viviparous mode of reproduction. In the other populations, ground colour of head is black or dark greyish tan; sulcus spermaticus terminates near the tip of the left lobe of the hemipenis; the largest microchromosome pair is metacentric; and the reproductive mode is oviparous. Of these, however, the Miyakojima population, which currendy consists solely of the subspecies, A. p. concelarum , differs from the nominotypical subspecies from the central Ryukyus in having only 94–102 subcaudal scales and telocentric W chromosome; A. p. pryeri has 112–130 subcaudal scales and submetacentric W chromosomes. These strongly suggest that the two subspecies have also substantially diverged from each other, constituting distinct evolutionary lineages. We thus accord full-species status to each of pryeri, concelarum and ishigakiense , and revise their definitions on the basis of the present results. A dichotomous key to the Japanese species and subspecies of Amphiesma is provided.     

A new genus and species of Renaudarctidae (Heterotardigrada: Arthrotardigrada) from Ryukyu Archipelago,Japan

A new armoured marine tardigrade, Nodarctus hallucis gen. et sp. nov., is described from specimens collected from sandy beaches of Haterumajima, Ishigakijima and Okinawajima Islands, Ryukyu Archipelago, Japan. It is a member of the rare family Renaudarctidae, which is characterized by a stocky body with dorsal and ventral plates and stumpy legs with digits, claws and accessory filaments. However, the collected animals have prominent characters that differ from the two known species of the family: subdivided dorsal segmental plates I–III lacking lateral processes, an acute caudal spike, indented sensory plates, short spikes and peculiar papillae on legs I–III, basal spikes of legs IV and only two digits on legs IV. These differences justify the erection of a new genus and species for the animal. Morphological affinities with other marine taxa, the function of the leg papillae and the distribution pattern of the new species are discussed.http://zoobank.org/urn:lsid:zoobank.org:pub:041878AA-B437-45BF-80E3-32591D21D965     

Commensal Leucothoidae (Crustacea, Amphipoda) of the Ryukyu Archipelago, Japan. Part III: coral rubble-dwellers

Commensal leucothoid amphipods have been collected from coral rubble samples throughout the Ryukyu Archipelago, Japan. Seven new species are described in two generawith valuable location data. A new locality is presented for Paranamixis misakiensis Thomas, 1997. An identification key to all described Leucothoidae of the Ryukyu Archipelago is provided.     

Descriptions of two azooxanthellate Palythoa species (Subclass Hexacorallia,Order Zoantharia) from the Ryukyu Archipelago,southern Japan

Two new species of zoantharians (Hexacorallia, Zoantharia, Sphenopidae), Palythoa mizigama sp. n. and Palythoa umbrosa sp. n., are described from the Ryukyu Archipelago, southern Japan. Unlike almost all other known Palythoa spp., both species are azooxanthellate and inhabit low-light environments such as floors or sides of caves, crevasses, or hollows of shallow coral reefs. The two species were initially considered to be the same species from their similar habitat environments and highly similar morphological features. However, phylogenetic analyses of nuclear internal transcribed spacer (ITS) ribosomal DNA, mitochondrial 16S ribosomal DNA, and cytochrome oxidase subunit I (COI) sequences revealed that these two species have a genetically distant relationship within the genus Palythoa. Morphological characteristics, including polyp size, tentacle number, external/internal coloration, and types and sizes of cnidae were examined in this study. As a result, only tentacle coloration was found to be useful for the morphological distinction between the two species. Palythoa mizigama possesses white tentacles with black horizontal stripes while Palythoa umbrosa possesses white tentacles without any stripe patterns. Considering their distant phylogenetic relationship, it can be assumed that their unique yet similar morphological and ecological characteristics developed independently in each species as an example of parallel evolution.     

Two new genera of the pharyngodonidae (Nematoda: Oxyuroidea) found in rhacophorid frogs of the Ryukyu Archipelago, Japan

Okinawandros goldbergi n. gen., n. sp. and Ataronema sekii n. gen., n. sp. (Nematoda: Pharyngodonidae) are described from rhacophorid frogs of the Ryukyu Archipelago, Japan. Okinawandros n. gen. resembles Batracholandros Freitas et Iba?ez, 1965 and Synodontisia Petter, Vassiliades et Troncy, 1972 but is readily distinguished from the former in lacking laterally situated genital papillae and by having anteriorly directed vagina and from the latter by having operculated eggs and lacking a spicule. Ataronema n. gen. most closely resembles Parathelandros Baylis, 1930 but is readily distinguished because the posterior pair of caudal papillae is not rosette shaped and the eggs are not operculated. Morphological notes of Pharyngodon polypedatis Yamaguti, 1941 are included.     

Comparison of morphological and genetic analyses reveals cryptic divergence and morphological plasticity in Stylophora (Cnidaria, Scleractinia)

A combined morphological and genetic study of the coral genus Stylophora investigated species boundaries in the Gulf of Aden, Yemen. Two mitochondrial regions, including the hypervariable IGS9 spacer and the control region, and a fragment of rDNA were used for phylogenetic analysis. Results were compared by multivariate analysis on the basis of branch morphology and corallite morphometry. Two species were clearly discriminated by both approaches. The first species was characterised by small corallites and a low morphological variability and was ascribed to a new geographical record of Stylophora madagascarensis on the basis of its phylogenetic distinction and its morphological similarity to the type material. The second species was characterised by larger corallite size and greater morphological variability and was ascribed to Stylophora pistillata. The analysis was extended to the intrageneric level for other S. pistillata populations from the Red Sea and the Pacific Ocean. Strong internal divergence was evident in the genus Stylophora. S. pistillata populations were split into two highly divergent Red Sea/Gulf of Aden and western Pacific lineages with significant morphological overlap, which suggests they represent two distinct cryptic species. The combined use of morphological and molecular approaches, so far proved to be a powerful tool for the re-delineation of species boundaries in corals, provided novel evidence of cryptic divergence in this group of marine metazoans.     

Two new species of diplosoma (Ascidiacea: Didemnidae) bearing prokaryotic algae prochloron from Okinawajima (Ryukyu Archipelago, Japan)

Two new species of didemnid ascidians, Diplosoma ooru sp. nov. and Diplosoma simileguwa sp. nov., are described from coral reefs on Okinawajima (Ryukyu Archipelago, Japan). These two species form green colonies, having a symbiotic association with a prokaryotic alga Prochloron sp. The former species was found at the reef edges in the subtidal zone and the latter was found in a shallow reef lagoon. In these species, the colonies are thinner and the zooids are smaller than those of any other Prochloron-bearing Diplosoma species so far described. Moreover, each of the present new species has a unique combination of stigmatic numbers: 5 stigmata in the first and third rows, 6 in the second row, and 4 in the fourth in D. ooru; 4 stigmata in the first and third rows, 5 in the second row, and 3 in the fourth in D. simileguwa. In both of the new species, the retractor muscle emerges from the underside of the thorax. Larval morphology of D. ooru is also described.     

Allozymic differentiation in the land snail Arianta arbustorum (Stylommatophora, Helicidae): historical inferences

The intraspecific genetic differentiation depends to a large part on historical factors. The mode of dispersal is an important determinant of the genetic diversity especially of newly founded populations. Fast long-distance colonization of formerly unsuitable habitats results in reduced genetic diversity and lineages originating from different glacial refugia form well-defined hybrid zones, where they meet. Slow dispersers, on the other hand, preserve their refugial genetic diversity. Paleontological findings and a previous analysis of mtDNA suggest that the land snail Arianta arbustorum, which today is widely spread across Europe, has survived the Pleistocene glaciations within the boundaries of permafrost. In the present paper, we asked, whether the differentiation of nuclear markers, i.e. allozymes, supports these results. We investigated the allozymic differentiation at 15 polymorphic loci in 14 Alpine and one English populations of the land snail A. arbustorum. Various tests of genetic population differentiation yielded ambiguous results. Allele frequencies differed significantly across populations and all but five pairwise F_ST values were significant. Genetic distances between populations were comparatively high. On the other hand, an exact test of population differentiation found no differences and the assignment of individuals to their populations of origin was poor. This indicates that allozymic differentiation is constrained. Whether these constraints are of natural or methodological nature remains open. Matrices of genetic and geographical distances were correlated only after removal of the English population from the analysis. Similarly, with one exception F_ST values increased as the number of regions included in the calculations increased. Thus, on a regional scale, we largely observed a pattern of isolation by distance, which does no longer hold on a larger scale. This is well in accordance with the previous findings based on mtDNA. Mitochondrial lineages were widely distributed across Europe and overlapped extensively. Considering the low potential for dispersal of a land snail, the patchy distribution of lineages, and the high genetic diversity also found in the present study suggests that A. arbustorum has survived the Pleistocene within the boundaries of permafrost.     

Genetic variation and gene flow of broadcast spawning and planula brooding coral,Goniastrea aspera (Scleractinia) in the Ryukyu Archipelago,southern Japan

The scleractinian coral Goniastrea aspera (Verrill) undergoes both broadcast spawning and planulae brooding in the Ryukyu Archipelago of southern Japan. Genetic variation and gene flow in G. aspera were studied using allozyme electrophoresis. We tested the hypothesis that gene flow is determined by the competency period of the planulae. We also assessed the relative contributions of sexual and asexual reproduction to recruitment. For the five staining systems surveyed, G. aspera encoded five polymorphic loci and one monomorphic locus. The genotype frequencies in each population significantly differed from the expected Hardy-Weinberg equilibrium (HWE), indicating that the local populations of G. aspera are not fully panmictic. The high ratio of the observed number of genotypes to the number of individuals (0.90 +/- 0.07, mean NG:N +/- SD) and the observed to expected genotypic diversity (0.84 +/- 0.11, mean GO:GE +/- SD) suggested that each population is likely maintained by sexual reproduction. The genetic differentiation (FST) and value of average number of migrants per generation (Nem) among and within regions ranged from 0.025 to 0.104 and 2.2 to 9.6, respectively. Comparisons with other species demonstrated that larva survival rates also influence gene flow. In addition, gene flow on distant reefs by planulae originating from spawning might prevent divergence by planulae originating from brooding for short-distant dispersal among and within populations of G. aspera in the Ryukyu Archipelago.     

Leaf morphological and genetic divergence in populations of Drimys (Winteraceae) in Chile

The genus Drimys is distributed in Chile from semi-arid zones to sub-Antarctic forests; there are three species of this tree, D. andina, D. confertifolia and D. winteri, the latter with varieties chilensis and winteri. Northern populations are found in small disjunct natural refuges, specifically mountain cloud forests and the bottom of ravines. The size and continuity of populations are greater in the south, where wetter conditions prevail. Morphological differences between populations have been observed, particularly between the northern populations of Fray Jorge and Talinay. This observation, led to the following questions: a) what is the level of morphological and genetic divergence among the populations of Drimys in Chile? and b) do the populations from Fray Jorge/Talinay, currently classified as D. winteri var. chilensis, differ genetically from the other populations of this variety? To answer these questions, we collected leaf samples from 37 populations of all Chilean Drimys, performed leaf morphology analysis and estimated genetic divergence using RAPD markers. We found a high degree of leaf morphological and genetic divergence between the populations of Fray Jorge/Talinay and the other Chilean species of Drimys. The morphological and genetic divergence among varieties of D. winteri was greater than that among the species of Drimys, which may indicate problems with their taxonomic classification.     

Disassociation between weak sexual isolation and genetic divergence in a hermaphroditic land snail and implications about chirality

Examination of the association between reproductive isolation and genetic divergence in a variety of organisms is essential for elucidating the mechanisms causing speciation. However, such studies are lacking for hermaphrodites. We measured premating (sexual) isolation in species pairs of the hermaphroditic land snail Albinaria and we compared it with their genetic divergence. We did not find substantial sexual isolation barriers between the species studied. The absence of strong sexual isolation between species implies its minor effect in the evolution of this genus, because distributional, population and life-history characteristics of Albinaria make mate-choice possibly redundant. Furthermore, we found disassociation between genetic divergence and sexual isolation, suggesting that they do not form necessarily a cause-effect duet. However, Albinaria voithii, the only dextral Albinaria species, shows strong sexual isolation against the other sinistral species. We discuss whether change in coiling either has triggered instantaneous speciation, or is an example of character displacement.     

Reproductive cycle of the Azorean endemic land snail Oxychilus (Drouetia) brincki Riedel, 1964 (Gastropoda: Pulmonata)

The life history of Oxychilus (Drouetia) brincki (Riedel, 1964), an endemic species from Santa Maria island (Azores), is addressed here for the first time. One population was analyzed for 1 year, to study the reproductive cycle and to assess the validity of three morphometric parameters as maturation diagnostic characters. The positive correlation between morphometric parameters (maximum diameter and number of whorls) can be useful to define the reproductive maturation status particularly during the active reproductive season. Oxychilus brincki is reproductively active between May and October/November; the residual values of mature oocytes between February and April allow reproduction to occur throughout the year. Our observations on gonadal maturation show that there is a functional protandric tendency and that photoperiod probably triggers the maturation process, whereas temperature acts mainly as a regulatory factor. Contrary to other terrestrial pulmonate snails that have a well demarcated reproductive cycle, Azorean species are gametogenically active throughout almost all the year.     

Patterns of morphological and molecular polymorphism in the land snail Cepaea nemoralis

In the land snail Cepaea nemoralis , allele frequencies at loci controlling shell polymorphisms often show large areas of remarkable constancy which are separated by steep clines from neighbouring areas with strikingly different allele frequencies. It has recently been claimed that these 'area effects' exemplify a general tendency for population differentiation without geographic isolation in a variety of organisms of relatively low mobility. As such they could represent an early phase in the process of speciation. If this is true, population differentiation of shell polymorphisms in Cepaea would be expected to be accompanied by parallel differentiation at other gene loci, such as those detected by gel electrophoresis.
We have studied populations of C. nemoralis in North Wales and in the Valle de Aran of the Pyrenees. Levels of molecular heterogeneity are comparable to those found in related animals which show much less visible polymorphism. In spite of some statistical problems inherent in the analysis ol overlapping geographic patterns, there is no clear association between the patterns of geographic variation at the visible and molecular levels. Claims that genetic differentiation in the visible polymorphisms between C. nemoralis populations are a special case of the formation of geographic races are therefore probably not justified.     

Description of a sexually dimorphic oribatid mite (Arachnida: Acari: Oribatida) from canopy habitats of the Ryukyu Archipelago, southwestern Japan

A new species in the monotypic genus Symbioribates, S. aokii sp. nov., is described on the basis of adult material collected from canopy habitats and wind traps in the Ryukyu Archipelago, southwestern Japan. Symbioribates aokii sp. nov. expresses different dimorphism in the octotaxic system from that of the type species, S. papuensis Aoki, 1966. The characteristics of this genus and its relationships to others of the superfamily Oripodoidea are discussed and a revised diagnosis of the family is given.     

Low genetic diversity but local genetic differentiation in endemic Minasia (Asteraceae) species from Brazil

Espinhaço Range is a Brazilian chain of mountains, extremely rich in endemic species. Minasia has six species, all perennial herbs endemic to this range. Twenty-two populations were sampled from all Minasia species and assayed for allozyme variation. The species showed low genetic variation, compatible with the expectation for endemics. Genetic identities in Serra do Cipó and Diamantina were high, even between populations of different species. On the other hand M. cabralensis, from Serra do Cabral, was more differentiated from the other species. We also observed a marked genetic differentiation within M. cabralensis. Most strikingly, two close populations of this species showed very different allele frequencies. Our findings highlight the importance of local differentiation in campos rupestres. The observed genetic structure indicates that substantial portions of genetic diversity could be lost with the extinction of only one population, which is especially threatening considering the already low genetic diversity.     

Genetic differentiation reflects geological history in the Azorean land snail,Leptaxis azorica

The land snail Leptaxis azorica, endemic on the Azores, was subjected to an electrophoretic (allozymes) and morphometric (genital tract) analysis. Genetic distances suggest the presence of four distinct lineages and are compatible with colonisation proceeding from the eastern, older islands (Santa Maria and S?o Miguel) to the west (Flores and Corvo). On S?o Miguel, genetic and morphometric differentiation is concordant with the separate colonisation of two islands that gave rise to the current island 50,000 years ago. The maximum time available for differentiation in isolation (0.55 million years) suggests a high rate of allozyme change between the two lineages on S?o Miguel. This may be related to population isolation and bottlenecks caused by human and volcanic activity on S?o Miguel in relatively recent times. This is more prominent in the eastern region where populations are also characterised by reduced genetic variation (loss of alleles and heterozygosity) compared to populations elsewhere.