Two species of Dasya (Ceramiales, Rhodophyta) from Bonin Islands, southern Japan, with the description of Dasya boninensis sp. nov.

Two species of Dasya in the Dasyaceae (Ceramiales, Rhodophyta) are reported from Bonin Islands, southern Japan. Dasya murrayana Abbott et Millar, new to Japan, is characterized by the following set of features: the tufted habit (up to 30 erect axes developing from a basal disc), small‐sized (6–10 mm high and 350–500 μm in diameter in the middle region), thinly but completely corticated axes, rigid and incurved pseudolaterals forming corymbose heads at the apices of axes and branches, the absence of adventitious monosiphonous filaments, a large number of tetrasporangial stichidia and spermatangial branches per fertile pseudolateral and slender spermatangial branches (35–45 μm in diameter). Dasya boninensis Masuda, Kurihara et Kogame, sp. nov. is characterized by short but thick (10–30 mm high and 600–1000 μm in diameter at the middle portion), heavily corticated axes, indistinct pericentral cells except for the upper portion in transverse sections, soft, straight pseudolaterals and adventitious monosiphonous filaments densely covering the axis and branches, a small number of tetrasporangial stichidia and spermatangial branches per fertile pseudolateral, thick spermatangial branches (65–90 μm in diameter), and short‐necked cystocarps. A dichotomous key to the taxa found in Japanese waters is given.     

Dasya enomotoi sp. nov. (Dasyaceae,Ceramiales), a new large Dasya from Japan

A new red alga, Dasya enomotoi, is described from Japan. This species is characterized by having a large thallus consisting of an elongated axis and many, radially arranged, polysiphonous branches both of which are heavily corticated and densely covered with numerous, soft monosiphonous filaments. It is distinguished from several similar species by the combination of the following: (i) indistinct pericentral cells in transverse sections except near the apices, (ii) the presence of enlarged, inner cortical cells, (iii) radially arranged adventitious monosiphonous filaments, (iv) three‐celled carpogonial branches, (v) six (sometimes five) tetrasporangia in each fertile segment of the stichidia, and (vi) three tetrasporangial cover cells that are not elongated longitudinally and usually not divided transversely. This species may have been identified as D. villosa Harvey by previous investigators in Japan.     

DASYA ROSLYNIAE SP. NOV. (DASYACEAE,RHODOPHYTA), WITH A DISCUSSION ON GENERIC DISTINCTIONS AMONG DASYA,EUPOGODON, RHODOPTILUM,AND POGONOPHORELLA1

Dasya roslyniae sp. nov. (Dasyaceae, Rhodophyta) is described from subtidal habitats at Split Solitary Island (30°14′S, 153°11′E), New South Wales, Australia. The new species is distinct within the genus due to its strongly compressed and secondarily bilaterally branched axes, differing from the majority of Dasya species that are terete and secondarily radially organized. Pseudolaterals are quickly caducous on ventral and dorsal (transverse) surfaces but are persistent on lateral surfaces for short distances from the apex, leaving the bulk of the plants flattened and denuded. Its gross morphological characters are thus similar to those displayed by the genera Pogonophorella, Eupogodon (formerly known as Dasyopsis), and Rhodoptilum. Characters used for separating these genera and Dasya are, in some cases, overlapping and in need of critical evaluation. To the primarily radially organized taxa, determined by examination of divisions of the apical cell, are placed species of Dasya, six species now included in Eupogodon, and the type and only species of Pogonophorella californica. Examination of the activity of the apical cells of Eupogodon planum and Rhodoptilum plumosum, the type species of their genera, confirms the primary bilaterality of these two genera, and the traditional defining feature of Eupogodon (lack of discernible pericentral cells in cross-section of indeterminate axes) is shown to be untenable. A secondary character that would separate Eupogodon and Rhodoptilum is the polysiphonous bases of otherwise monosiphonous laterals (pseudolaterals) in Eupogodon and the monosiphonous bases in Rhodoptilum.     

New records of three marine red algae from Japan

Three species in the red algal order Ceramiales, Dasya longifila Masuda et Uwai (Dasyaceae), Endosiphonia horrida (C. Agardh) P. Silva (Rhodomelaceae) and Laurencia flexilis Setchell (Rhodomelaceae), are reported from Japan for the first time, and their morphological features are described along with taxonomic comments. Our findings point to the northernmost limit of geographic distribution of these species in the north‐western Pacific. Dasya longifila is characterized by small, sparsely corticated axes, long pseudolaterals in which intercalary cell divisions take place, and a small number of tetrasporangial stichidia and spermatangial branches per fertile pseudolateral. Endosiphonia horrida is characterized by frequently anastomosing branches that form a bush‐like tuft without a percurrent axis, inner cortical cells becoming the same length as the axial and periaxial cells, and luxuriously developed, unbranched trichoblasts. Laurencia flexilis is characterized by numerous cartilaginous rigid axes developing from a basal disc without creeping branches, the production of 4 periaxial cells per vegetative segment and the absence of longitudinally oriented secondary pit‐connections between contiguous superficial cortical cells.     

TWO NEW SPECIES OF TAYLORIELLA (RHODOMELACEAE,RHODOPHYTA) FROM THE NORTHEASTERN NORTH PACIFIC1

Two new species are recognized in the rhodomelacean genus Tayloriella Kylin: T. divaricata sp. nov. and T. abyssalis sp. nov. These two taxa are distributed in the northeastern North Pacific, the former ranging from Amchitka Island in the Aleutians through southcentral Alaska to northern British Columbia, and the latter ranging also from Amchitka Island through southcentral Alaska and British Columbia into northern Washington. A characteristic of these two species shared with the type of Tayloriella is that the abaxial lateral always overtops the monopodially developed axes in every order of branching. The laterals have little congenital fusion with the parent axes. A common feature in these two species is that the laterals are terminated in a relatively long monosiphonous portion (usually 6 or 7 cells). The relationship of Tayloriella to Pterosiphonia and Pterosiphoniella is discussed.     

Vegetative and reproductive morphology of Herpochondria corallinae (Martens) Falkenberg and H. elegans (Okamura) Itono (Ceramiaceae,Rhodophyta) from Korea

The vegetative and reproductive morphology of two epiphytic Herpochondria species, H. corallinae (Martens) Falkenberg (the type species) and H. elegans (Okamura) Itono from Korea were investigated. They are bilaterally compressed and alternate-distichously branched, and lateral branches are produced by oblique divisions of the apical cell. Procarps are restricted to the first periaxial cell of the branches. Spermatangial mother cells produce one or two spermatangia. H. corallinae forms tetrasporangia on six periaxial cells, whereas H. elegans has them on only the two lateral periaxial cells. The prostrate habit, the production of six periaxial cells in opposite pairs, and tetrasporangial stichidia are confirmed as diagnostic characters of the genus Herpochondria.     

THE GENUS BALLIELLA ITONO & TANAKA (RHODOPHYTA: CERAMIACEAE) FROM EASTERN AUSTRALIA1

Three new species of the genus Balliella Itono & Tanaka are described from eastern Australia. Balliella amphiglanda from Lord Howe I. and Port Hacking, N.S.W., is distinctive in producing either abaxial or adaxial gland cells from the basal cells of lateral branches and in having tetrasporangia restricted to short branches. Balliella repens, from Tryon I., Heron I and Wistari Reef Qld., and Lord Howe I., N.S.W., is distinguished from the other species of the genus by its regularly developed prostrate systems and clustered tetrasporangia. Balliella grandis, from Wistari Reef, North West I. and One Tree I., Qld., is the largest recorded species of Balliella. It has correspondingly large gland cells and abaxial as well as adaxial tetrasporangia. Our work supports the placement of Balliella in the tribe Antithamnieae, a move which necessitates emending Wollaston's definition of the tribe to include species with procarps that form at successive levels along main axes rather than at only one or two points behind the apices.     

ASTEROMENIA (RHODYMENIACEAE,RHODYMENIALES), A NEW RED ALGAL GENUS BASED ON FAUCHEA PELTATA1

Asteromenia gen. nov. (Rhodymeniales, Rhodophyta) is proposed with a single species, Asteromenia peltata (W. R. Taylor) comb. nov. (basionym: Fauchea peltata W. R. Taylor). Thalli of the proposed new genus are stipitate with dorsiventral, peltate blades that are initially circular in shape but with age become stellate with ligulate arms. Internally, the blades have a polystromatic medulla of large, hyaline cells, grading into a cortex of smaller, pigmented cells. Clusters of translucent cells occur on the dorsal surface of the blade. Tetrasporangia are formed by transformations of intercalary midcortical cells. Mature tetrasporangia have cruciately arranged spores and are densely aggregated in the cortex, mostly on the ventral surface, but occasional tetrasporangia also arise on the dorsal surface. Carpogonial branches are four-celled and arise on inner cortical cells. Auxiliary cells are borne on auxiliary mother cells attached to supporting cells of the carpogonial branches. Cystocarps are protuberant, with well-developed, ostiolate pericarps that often have extended, proboscis-like necks. The new genus differs from the previously described peltate or dorsiventral taxa in the Rhodymeniaceae by its polystromatic medulla (Maripelta and Sciadophycus have a monostromatic medulla), intercalary tetrasporangia formed in an unmodified cortex, and four-celled carpogonial branches (Halichrysis, as typified by H. depressa (J. Agardh) F. Schmitz, has terminal tetrasporangia in nemathecia and three-celled carpogonial branches).     

Allium purpureoviride sp. nov. (Alliaceae) from east Anatolia,Turkey

Allium purpureoviride M. Koyuncu & ?. Genç (sect. Melanocrommyum) is described as a new species from east Anatolia, Turkey. The new species is closely related to A. rothii Zucc. from Israel and some characters of the new taxon show similarity with A. cyrilli Ten. and A. asclepiadeum Bornm. The morphological characters of the related taxa are discussed and the distribution of the taxa is mapped. The diploid chromosome number is 2n = 16.     

New red alga, Acanthopeltis longiramulosa sp. nov. (Gelidiales, Rhodophyta) from Jeju Island, Korea

A new red alga from Jeju Island, Korea is described. The alga is assigned to Acanthopeltis, Gelidiaceae by the characteristics of terete erect axes, sympodial growth, and suborbicular branchlets that are amplexi‐caul at the base. Acanthopeltis longiramulosaY. Lee et Kim is characterized by a discoid holdfast with a few stolons, rhizoids arising from the apex of the branchlet, an erect terete axis diverging into a few branches, longish obpyriform to lanceolate branchlets with smooth surfaces, and tetrasporangial stichidia or sper‐matangial and cystocarps appendages on the marginal region of the branchlet. A. longiramulosa is more closely related to Acanthopeltis japonica than Acanthopeltis hirsuta in terms of thallus morphology. However, A. longiramulosa is easily distinguished from A. japonica, which has suborbicular branchlets with setaceous processes on both surfaces.     

Genetic variation in Tertiary relics: The case of eastern‐Mediterranean Abies (Pinaceae)

The eastern‐Mediterranean Abies taxa, which include both widely distributed species and taxa with minuscule ranges, represent a good model to study the impacts of range size and fragmentation on the levels of genetic diversity and differentiation. To assess the patterns of genetic diversity and phylogenetic relationships among eastern‐Mediterranean Abies taxa, genetic variation was assessed by eight nuclear microsatellite loci in 52 populations of Abies taxa with a focus on those distributed in Turkey and the Caucasus. Both at the population and the taxon level, the subspecies or regional populations of Abies nordmanniana s.l. exhibited generally higher allelic richness, private allelic richness, and expected heterozygosity compared with Abies cilicica s.l. Results of both the Structure analysis and distance‐based approaches showed a strong differentiation of the two A. cilicica subspecies from the rest as well as from each other, whereas the subspecies of A. nordmanniana were distinct but less differentiated. ABC simulations were run for a set of scenarios of phylogeny and past demographic changes. For A. ×olcayana, the simulation gave a poor support for the hypothesis of being a taxon resulting from a past hybridization, the same is true for Abies equi‐trojani: both they represent evolutionary branches of Abies bornmuelleriana.     

ALGAE FROM CABO FRIO UPWELLING AREA. 2. GELIDIOCOLAX PUSTULATA (GELIDIACEAE,RHODOPHYTA): AN UNUSUAL NEW PUTATIVE PARASITIC SPECIES1

A new species of Gelidiocolax Gardner, G. pustulata Oliveira and Yoneshigue, is described in the tropical western Atlantic from Brazil. The species usually grows on the basal portion of the main axis of Pterocladia capillacea (Gmelin) Bornet et Thuret. Abundant material was collected mainly from November to March at Cabo Frio Island, in the northeast part of the State of Rio de Janeiro, a marine area well known for its upwelling. Infection by the putative parasite seems to damage the host tissue, stimulating the development of a “gall-like” structure that leads to the outgrowth of adventitious branches. The new species has the vegetative features and reproductive structures of the genus Gelidiocolax. It can be distinguished from the other Gelidiocolax species mainly on the basis of its position on the host, size of pustula, the tetrasporangia and the development of spermatangia. Studies of this new taxon support the placement of Gelidiocolax in the Gelidiaceae and not the Choreocolacaceae, as has been suggested in the literature.     

Polysiphonia perforans sp. nova (Ceramiales,Rhodophyta) from the Mediterranean Sea

ABSTRACT

A new species of the genus Polysiphonia from the Mediterranean Sea is described. It is an ecorticate species, with 4 pericentral cells, showing prostrate axes from which erect axes arise. Rhizoids are formed by pericentral cells in a median position remaining in open connection with them. Erect axes are straight, simple throughout or pseudodichotomous at the base then simple or with one (rarely two-three) orders of branching; trichoblasts and scar cells not observed. Only tetrasporangial plants were found. They show ellipsoid tetrasporangia borne in short straight series, often interrupted by sterile segments. The new species is also characterized by a peculiar habit consisting of prostrate axes, adhering to lower faces of Peyssonnelia spp. by means of rhizoids growing upward, from which erect upright axes perforating thalli of the supporting species arise. A comparison with the related species of Polysiphonia was also carried out.     

A new species of Cinclodes from the Espinhaço Range,southeastern Brazil: insights into the biogeographical history of the South American highlands

We describe Cinclodes espinhacensis (Furnariidae), a new species discovered at high elevation in the southern portion of the Espinhaço Range, in the state of Minas Gerais, southeastern Brazil. This new taxon is closely related to the Long‐tailed Cinclodes Cinclodes pabsti, endemic to Serra Geral, southern Brazil. We present diagnostic morphological, genetic and vocal characters that support the rank of species for this allopatric taxon. It is readily distinguishable from C. pabsti by its much darker back, chest and flanks, lower body mass, shorter tarsus‐length, lower frequency of vocalizations, and longer duration of calls. DNA sequence data estimate that the divergence time between this new species and Cinclodes pabsti occurred c. 220 000 years ago, during the late Pleistocene. This discovery illustrates remarkable biogeographical connections among the cold regions of South America. The new species has a restricted range and we suggest it meets the criteria of the IUCN Red List category of Endangered.     

PHYLOGENETIC ANALYSES OF THE RED ALGAL ORDER RHODYMENIALES SUPPORTS RECOGNITION OF THE HYMENOCLADIACEAE FAM. NOV., FRYEELLACEAE FAM. NOV., AND NEOGASTROCLONIUM GEN. NOV.1

Systematics of the red algal order Rhodymeniales was investigated using combined large‐subunit nuclear ribosomal DNA (LSU) and elongation factor 2 (EF2) analyses. These data were subjected to distance, parsimony, and Bayesian analyses, and the resulting phylogenies were largely congruent with previously published SSU results in that the four currently recognized rhodymenialean families (Champiaceae, Faucheaceae, Lomentariaceae, and Rhodymeniaceae) were resolved as monophyletic lineages (with the exception of Coelothrix, which is here transferred to the Champiaceae from the Rhodymeniaceae). In addition, taxa presently considered as incertae sedis consisted of two lineages (Fryeella lineage and Hymenocladia lineage). Based on these results, two new families are proposed: (i) the Fryeellaceae fam. nov. to accommodate the genera Fryeella, Hymenocladiopsis, and a new taxon from Tasmania, Australia; and (ii) the Hymenocladiaceae fam. nov., to accommodate Asteromenia, Hymenocladia, and Erythrymenia. In addition to resolving familial relationships, these analyses resolved some novel interspecific affinities, and we propose a new genus, Neogastroclonium gen. nov., for Gastroclonium subarticulatum, a species that differs significantly in both morphology and molecular data from genuine species of Gastroclonium. Relationships among additional faucheacean and lomentariacean taxa were investigated using LSU data only, and these results are discussed. The familial classification of the Rhodymeniales proposed herein is discussed in light of vegetative and reproductive anatomy, most notably the ontogeny of the tetrasporangia.     

Chloroplast Genome Evolution in the Euglenaceae

Over the last few years multiple studies have been published outlining chloroplast genomes that represent many of the photosynthetic euglenid genera. However, these genomes were scattered throughout the euglenophyceaean phylogenetic tree, and focused on comparisons with Euglena gracilis. Here, we present a study exclusively on taxa within the Euglenaceae. Six new chloroplast genomes were characterized, those of Cryptoglena skujai, E. gracilis var. bacillaris, Euglena viridis, Euglenaria anabaena, Monomorphina parapyrum, and Trachelomonas volvocina, and added to six previously published chloroplast genomes to determine if trends existed within the family. With this study: at least one genome has now been characterized for each genus, the genomes of different strains from two taxa were characterized to explore intraspecific variability, and a second taxon has been characterized for the genus Monomorphina to examine intrageneric variability. Overall results showed a large amount of variability among the genomes, though a few trends could be identified both within Euglenaceae and within Euglenophyta. In addition, the intraspecific analysis indicated that the similarity of a genome sequence between strains was taxon dependent, and the intrageneric analysis indicated that the majority of the evolutionary changes within the Euglenaceae occurred intergenerically.     

Odorella benthonica gen. & sp. nov. (Pleurocapsales,Cyanobacteria): an odor and prolific toxin producer isolated from a California aqueduct

Pleurocapsales are one of the least understood groups of cyanobacteria in terms of molecular systematics and biochemistry. Considering the high number of cryptic taxa within the Synechococcales and Oscillatoriales, it is likely that such taxa also occur in the Pleurocapsales. The new genus described in our research is the first known pleurocapsalean cryptic taxon. It produces off‐flavor and a large number of bioactive metabolites (n = 38) some of which can be toxic including four known microcystins. Using a polyphasic approach, we propose the establishment of the genus Odorella with the new species O. benthonica from material originally isolated from the California Aqueduct near Los Angeles.     

LIFE HISTORY OF BONNEMAISONIA CENICULATA (RHODOPHYTA): A LABORATORY AND FLELD STUDY1, 2

Cystocarpic and spermatangial plants of rarely reported red alga Bonnemaisonia geniculata Gardner, epiphytic on Odonthalia Aoccosa (Esp.) Falk, were collected from june to September 1975 at shell Beach, california. Carpospores inoculated into unialgal culture divided, upon germination, in to two daughter cells, both of which formed erect and rhizoidal axes, Erect axes were uniseriale and alternately branched with a distictive zigzag pattern of axial cells. No tetrasporangia developed in culture. The presumptive tetrasporangia developed in culture to a described genus. Plants morphologically similar to those cultured from carpospores were found at the collection site; they bore tetrasporangia from February to june. Cullured letrasporews gave rise to male and female plants similar to those of field-collected B. geniculate in ca. a I:I ratio. Fertile female plants in the presence of male plants formed cystocarps. Carpospores gave rise to the alternately branched tetrasporophyte phase. Bonnemaisonia geniculate has a heteromorphic life history involving a previously undescribed tetrasporophyte.     

Highly incomplete taxa can rescue phylogenetic analyses from the negative impacts of limited taxon sampling

Background

Phylogenies are essential to many areas of biology, but phylogenetic methods may give incorrect estimates under some conditions. A potentially common scenario of this type is when few taxa are sampled and terminal branches for the sampled taxa are relatively long. However, the best solution in such cases (i.e., sampling more taxa versus more characters) has been highly controversial. A widespread assumption in this debate is that added taxa must be complete (no missing data) in order to save analyses from the negative impacts of limited taxon sampling. Here, we evaluate whether incomplete taxa can also rescue analyses under these conditions (empirically testing predictions from an earlier simulation study).

Methodology/Principal Findings

We utilize DNA sequence data from 16 vertebrate species with well-established phylogenetic relationships. In each replicate, we randomly sample 4 species, estimate their phylogeny (using Bayesian, likelihood, and parsimony methods), and then evaluate whether adding in the remaining 12 species (which have 50, 75, or 90% of their data replaced with missing data cells) can improve phylogenetic accuracy relative to analyzing the 4 complete taxa alone. We find that in those cases where sampling few taxa yields an incorrect estimate, adding taxa with 50% or 75% missing data can frequently (>75% of relevant replicates) rescue Bayesian and likelihood analyses, recovering accurate phylogenies for the original 4 taxa. Even taxa with 90% missing data can sometimes be beneficial.

Conclusions

We show that adding taxa that are highly incomplete can improve phylogenetic accuracy in cases where analyses are misled by limited taxon sampling. These surprising empirical results confirm those from simulations, and show that the benefits of adding taxa may be obtained with unexpectedly small amounts of data. These findings have important implications for the debate on sampling taxa versus characters, and for studies attempting to resolve difficult phylogenetic problems.