Spatially variable effects of copper on sessile invertebrates across a marina

Heavy metals often occur at elevated concentrations in bays and estuaries surrounded by urbanised areas and can cause substantial ecological changes to marine communities. The toxic effect of heavy metals can be modified by a several physico-chemical processes in the marine environment. These processes can vary greatly over small scales, so it is likely that the ecological effects of heavy metals on marine biota also vary substantially over similar spatial scales. We used a manipulative field experiment to assess the spatial variation in the effect of copper on sessile invertebrates within a marina and tested whether this variation was influenced by variation in localised water flow. Effects of copper were not consistent over relatively small spatial scales (i.e. metres) for all sessile invertebrate species. Three of the twenty sessile invertebrates from our experimental assemblages showed significant small scale variation in the effect of copper at the scale of metres. For these taxa, the effect of copper varied in magnitude and direction. We had predicted that the effect of copper would diminish with increased water flow, but this did not occur for any taxa. We suggest that variations in the presence of organic or inorganic compounds or in pH within the marina may provide alternative explanations for the spatially variable effects detected in this study. Our study's findings highlight the need for future field assessments of the complex physical, chemical and biological influences on the ecological effects of heavy metals, particularly at small spatial scales. Such studies are the key to improving our prediction about the effects of heavy metals on marine organisms and aid in better characterisation of the risk of heavy metals in the marine environment.     

Cine 4DCT imaging artifacts: Quantification and correlations with scanning parameters and target kinetics

To study temporal resolved computed tomography imaging (4-Dimensional Computed Tomography: 4DCT) artifacts correlations with scanning parameters and target kinetics and to assess uncertainty introduced by 4DCT in radiotherapy treatment planning.In this work we classified 4DCT artifacts as finite gantry rotation speed related (FGS) and finite sampling frequency related (FSF). We studied FGS artifacts using a respiratory phantom and FSF artifacts using a Monte Carlo simulation of acquisition timing.From our analysis FGS localization error is comparable with image resolution determined by voxel dimensions. Remaining FGS artifacts are correlated with gantry rotation time (Trot), target velocity (v) and their interaction.FSF artifacts occurrence is correlated with sampling ratio (SR), i.e. the ratio of patient respiratory period (Tresp) and sampling time (Ts).In the studied velocity range (0–2 cm/s), using a Trot of 0,5s and a SR higher than 15, FGS and FSF artifacts became comparable with other sources of uncertainty.Our considerations are valid for “ideal” breathing pattern only. When variations from periodical breathing, high target velocity (more than 2 cm/s) or high peak to peak amplitude (more than 2 cm) are present, patient specific images artifacts analysis is recommended.     

Diversity and morphological disparity of desmid assemblages in Central European peatlands

Morphological disparity has increasingly been used as an alternative measure of biological diversity based on the shape features of organisms. In this study, we investigated the species diversity and morphological disparity of benthic Desmidiales in Central European peatland pools. The shape features of cells were determined using the 3-D elliptical Fourier analysis of their frontal and lateral views. The resulting morphospace was used to calculate the contributions of localities and species to the morphological variation. In addition, the disparity of samples and their average cell complexity (indicating intricacy of cell shapes) was evaluated. These data were related to species diversity data and to the abiotic factors. Species diversity was positively correlated with pH and conductivity. The low-pH localities generally supported a more variable species composition than did slightly acidic to neutral localities. Conversely, the total nitrogen concentrations of these areas negatively correlated with species diversity. Interestingly, partial morphological disparity (measuring the contribution of a sample to the overall morphological variation) did not correlate with species diversity. On the contrary, several mountain peat bog localities had high disparity values, irrespective of their rather low species diversity. In addition, several samples from minerotrophic fens with high diversity had average or low values of partial morphological disparity. These results indicate the relative importance of mountain peat bogs for the total morphological diversity of Desmidiales within the region that could not be ascertained solely from species diversity data. The inner morphological disparity of samples was highly correlated with their species diversity. Species of the genus Micrasterias, Hyalotheca dissiliens and Desmidium species had the highest partial morphological disparity, thus indicating their marginal position within the morphospace. Micrasterias and Euastrum species had the highest complexity values. The average cell complexity of individual samples did not correlate with their diversity or disparity; however, it was positively correlated with the levels of total nitrogen and phosphorus, and illustrates a pattern different from that arrived at by species diversity data. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: J. Padisak     

Regularity and polarity in budding of the colonial scleractinian Dendrophyllia ehrenbergiana: consequences of radio‐bilateral symmetry of the scleractinian body plan

Sentoku, A. & Ezaki, Y. 2012: Regularity and polarity in budding of the colonial scleractinian Dendrophyllia ehrenbergiana: consequences of radio‐bilateral symmetry of the scleractinian body plan. Lethaia, Vol. 45, pp. 586–593. Regularities and polarity in budding of the azooxanthellate scleractinian Dendrophyllia ehrenbergiana were examined with the aim of understanding the developmental constraints on the formation of colonies. Its mode of budding, in light of the orientations of directive septa of offsets and the inclination angle of budding, is consistent with that of other dendrophyllids; however, the offsets of D. ehrenbergiana only occur near the two primary septa on the convex side of individual corallites, showing a plane of bilateral symmetry with a distinct polarity. These regularities and polarity are seen in the axial and its derived corallites throughout growth. Of note, the polarity at individual corallites is clearly reflected in subsequent colony growth by the branching pattern and corallite number. These characteristics imply the presence of radio‐bilateral symmetrical constraints on the asexual reproduction of the Scleractinia and give us invaluable clues to the understanding of shape‐making mechanisms of marine modular organisms. □Asexual reproduction, azooxanthellate coral, budding, colony, Dendrophyllia ehrenbergiana, polarity.     

福建山樱花形态多样性分化的研究

以闽、赣、粤、台4省13个种群292份福建山樱花种质为分析材料,对16个形态性状进行聚类分析和主成分分析。结果表明:福建山樱花不同个体间各性状均有明显差异,变异系数较大,优株选择潜力很大。系统聚类分析可将292份参试材料划分为2个表征群4个亚表征群,除重瓣型福建山樱花外,单瓣型福建山樱花的形态特征在种群间总体上无明显的分化规律,不同种群的个体交叉聚在同一个表征群内,但在同一亚表征群内,同一种群的多数个体常能聚在一起,表明种群之间在形态上发生了一定程度的分化,只是这种分化还不能清楚地区分不同的种群。主成分分析结果表明叶形、叶尖、叶缘、分枝能力、60 d苗高、花色和花形是造成福建山樱花形态分化的主要因素。     

Evolution and dynamics of branching colonial form in marine modular cnidarians: gorgonian octocorals

Multi-branched arborescent networks are common patterns for many sessile marine modular organisms but no clear understanding of their development is yet available. This paper reviews new findings in the theoretical and comparative biology of branching modular organisms (e.g. Octocorallia Cnidaria) and new hypotheses on the evolution of form are discussed. A particular characteristic of branching Caribbean gorgonian octocorals is a morphologic integration at two levels of colonial organization based on whether the traits are at the module or colony level. This revealed an emergent level of integration and modularity produced by the branching process itself and not entirely by the module replication. In essence, not just a few changes at the module level could generate changes in colony architecture, suggesting uncoupled developmental patterning for the polyp and branch level traits. Therefore, the evolution of colony form in octocorals seems to be related to the changes affecting the process of branching. Branching in these organisms is sub-apical, coming from mother branches, and the highly self-organized form is the product of a dynamic process maintaining a constant ratio between mother and daughter branches. Colony growth preserves shape but is a logistic growth-like event due to branch interference and/or allometry. The qualitative branching patterns in octocorals (e.g. sea feathers, fans, sausages, and candelabra) occurred multiple times when compared with recent molecular phylogenies, suggesting independence of common ancestry to achieve these forms. A number of species with different colony forms, particularly alternate species (e.g. sea candelabrum), shared the same value for an important branching parameter (the ratio of mother to total branches). According to the way gorgonians branch and achieve form, it is hypothesized that the diversity of alternate species sharing the same narrow variance in that critical parameter for growth might be the product of canalization (or a developmental constraint), where uniform change in growth rates and maximum colony size might explain colony differences among species. If the parameter preserving shape in the colonies is fixed but colonies differ in their growth rates and maximum sizes, heterochrony could be responsible for the evolution among some gorgonian corals with alternate branching.     

Symbiosis and host morphological variation: Symbiodiniaceae photosynthesis in the octocoral Briareum asbestinum at ambient and elevated temperatures

Intra-species morphological variation may occur in sessile organisms, such as corals, living in different habitats. Conversely, the octocoral Briareum asbestinum exhibits both encrusting and upright branching morphologies at the same shallow water habitat, enabling studying physiological differences uncoupled from habitat variation due to depth or reef location. We investigated the mutualism between endosymbiotic dinoflagellate algae, Breviolum spp. (previously clade B Symbiodinium), and these B. asbestinum morphologies at ambient and elevated temperatures. Based on msh1 gene sequences, the host morphologies were genetically similar although they differed in protein content, polyp expansion behavior, and associated Breviolum (B19 for encrusting and B21 for branching B. asbestinum). Due to colony orientation, polyps in encrusting B. asbestinum experienced irradiance levels nearly three times higher than polyps in the branching morph, which probably contributed to the lower photochemical and light absorption efficiencies of the Breviolum in encrusting fragments. The light-limited portion of photosynthesis–irradiance curves and the intracellular chlorophyll concentrations, however, indicated that Breviolum in both morphologies were acclimated to similar internal irradiances. Encrusting B. asbestinum exhibited higher Breviolum density, areal chlorophyll a, and greater photosynthetic rates cm⁻² compared to branching B. asbestinum. Notably, elevated temperature did not cause bleaching in either morphology, as Breviolum and chlorophyll densities did not differ significantly from ambient temperature, although the two morphologies adjusted some of the measured parameters, indicating coping with the stressor. In the face of continued ocean warming, the high thermal tolerance of octocorals may reinforce the shift of Caribbean reefs from scleractinian coral to octocoral dominance.

     

Inbreeding shapes the evolution of marine invertebrates

Inbreeding is a potent evolutionary force shaping the distribution of genetic variation within and among populations of plants and animals. Yet, our understanding of the forces shaping the expression and evolution of nonrandom mating in general, and inbreeding in particular, remains remarkably incomplete. Most research on plant mating systems focuses on self-fertilization and its consequences for automatic selection, inbreeding depression, purging, and reproductive assurance, whereas studies of animal mating systems have often assumed that inbreeding is rare, and that natural selection favors traits that promote outbreeding. Given that many sessile and sedentary marine invertebrates and marine macroalgae share key life history features with seed plants (e.g., low mobility, modular construction, and the release of gametes into the environment), their mating systems may be similar. Here, we show that published estimates of inbreeding coefficients (F_IS) for sessile and sedentary marine organisms are similar and at least as high as noted in terrestrial seed plants. We also found that variation in F_IS within invertebrates is related to the potential to self-fertilize, disperse, and choose mates. The similarity of F_IS for these organismal groups suggests that inbreeding could play a larger role in the evolution of sessile and sedentary marine organisms than is currently recognized. Specifically, associations between traits of marine invertebrates and F_IS suggest that inbreeding could drive evolutionary transitions between hermaphroditism and separate sexes, direct development and multiphasic life cycles, and external and internal fertilization.     

Combining Traits and Density to Model Recruitment of Sessile Organisms

We propose an integrative approach that explains patterns of recruitment to adult populations in sessile organisms by considering the numbers of individuals and their body size. A recruitment model, based on a small number of parameters, was developed for sessile organisms and tested using the barnacle Semibalanus balanoides, a marine invertebrate inhabiting North Atlantic intertidal shores. Incorporating barnacle body size improved model fit beyond that based on density alone, showing that growth played an important role in how resource limitation affected survival. Our approach uncovered the following: First, changes in the shape of the recruitment curve resulted from the balance between individual growth and mortality. Second, recruitment was limited by the least plastic trait used to characterise body size, operculum area. Basal area, a trait that responded to increases in barnacle density, did not contribute significantly to explain patterns of recruitment. Third, some temporal variation is explained by changes in the amount of space occupied by shells of dead barnacles: at high cover barnacles are densely packed and these shells remain long after death. Fourth, seasonal variation and spatial variation in survival can be separated from that resulting from resource limitation; survival was predicted for two different shores and four sampling times using a single recruitment model. We conclude that applying this integrative approach to recruitment will lead to a considerable advance in understanding patterns of mortality of early stages of sessile organisms.     

Dynamics of marine sessile organisms with space-limited growth and recruitment: application to corals

We study a model for the community dynamics of marine sessile organisms with space limitation both in recruitment and in growth. We consider an open population in which recruits are supplied from a pelagic pool of larvae produced by adults in distant habitats. Assumptions are: the larval settlement rate is proportional to the amount of free space and to the abundance of larvae in the water column. The growth rate of settled individuals increases with the fraction of free space within the local habitat. We study the competition between two morphotypes with different rates of recruitment, growth, and mortality. When adult mortality is low, following a major disturbance that creates bare patch, the space is quickly filled by larval recruitment and adult growth. Then the morphotype composition changes slowly and converges to the equilibrium that is strongly affected by mortality. We also examine several other limiting cases in which one of the three demographic processes occurs either very slowly or very quickly. Based on the model behavior, we discuss the possible factors responsible for the spatial variation in the morphotype composition observed in coral communities. The dominance of branching corals in protected sites can be explained by their faster growth than tabular corals. The dominance of tabular corals in exposed sites can be explained either by lower mortality or by faster recruitment than branching corals.     

Variation in clone structure of fragmenting coral reef sponges

Populations of three branching Caribbean demosponge species are composed of clones produced by asexual fragmentation. Dispersal of the fragments before they become established as independent individuals scatters clone members widely and intermixes members of different clones, complicating study of the clone structure of these populations and contrasting with many other sessile clonal organisms. Clone structures of these populations were inferred using a combination of tissue-compatibility relationships and an analysis of variations in morphology and colour. Although tissue compatibility cannot be used for precise identification of sponge clones, in general, patterns of variation in morphological characters influencing fragmentation and patterns of fragment dispersal and recruitment suggest that, in these populations, tissue-compatibility relationships closely reflect clone structure. Conditions that must be met in order to use tissue compatibility for study of sponge clones are discussed, and previous results, from which conflicting conclusions have been drawn, reconciled in this context. Variations among clones in numbers of physiologically independent members and in size and shape of areal extent are discussed in the context of processes that may affect evolution of clonal characters in these populations and in other species that propagate by dispersing asexual fragments.     

Marine biofilm bacteria evade eukaryotic predation by targeted chemical defense

Many plants and animals are defended from predation or herbivory by inhibitory secondary metabolites, which in the marine environment are very common among sessile organisms. Among bacteria, where there is the greatest metabolic potential, little is known about chemical defenses against bacterivorous consumers. An emerging hypothesis is that sessile bacterial communities organized as biofilms serve as bacterial refuge from predation. By testing growth and survival of two common bacterivorous nanoflagellates, we find evidence that chemically mediated resistance against protozoan predators is common among biofilm populations in a diverse set of marine bacteria. Using bioassay-guided chemical and genetic analysis, we identified one of the most effective antiprotozoal compounds as violacein, an alkaloid that we demonstrate is produced predominately within biofilm cells. Nanomolar concentrations of violacein inhibit protozoan feeding by inducing a conserved eukaryotic cell death program. Such biofilm-specific chemical defenses could contribute to the successful persistence of biofilm bacteria in various environments and provide the ecological and evolutionary context for a number of eukaryote-targeting bacterial metabolites.     

Underwater Adhesive of Marine Organisms as the Vital Link Between Biological Science and Material Science

Marine sessile organisms naturally attach themselves to diverse materials in water by a technique that has so far remained unreproducible. Recent studies on the holdfast of marine sessile organisms have revealed natural concepts that are currently beyond our understanding with respect to the molecular design and macroscopic range. The combination of valuable and practical natural design of biotic adhesives as biomolecular materials, together with continuing efforts towards mimetic design, hold the promise of revolution for future materials. This review focuses on recent advances in the study of barnacle underwater cement, a protein complex whose constituents and the properties of individual components are being uncovered. A comparison is made with the model systems used by the mussel and tubeworm.     

Antifouling properties of tough gels against barnacles in a long-term marine environment experiment

In the marine environment, the antifouling (AF) properties of various kinds of hydrogels against sessile marine organisms (algae, sea squirts, barnacles) were tested in a long-term experiment. The results demonstrate that most hydrogels can endure at least 2 months in the marine environment. In particular, mechanically tough PAMPS/PAAm DN and PVA gels exhibited AF activity against marine sessile organisms, especially barnacles, for as long as 330 days. The AF ability of hydrogels toward barnacles is explained in terms of an ‘easy-release’ mechanism in which the high water content and the elastic modulus of the gel are two important parameters.     

Morphogenetic bases and parametric system of trichome evolution in plants of the genus <Emphasis Type="Italic">Draba</Emphasis> L.

Using quantitative morphological analysis of light microscopy data, the normal variation of trichome morphogenesis is studied in six whitlow grass species (Draba L.) and the morphological variation of adult trichomes in 11 species. The evolution consists in the transition from a radial morphogenesis pattern to bilateral and replacement of complex (branched) trichome rays with simple (unbranched) rays. A parametric system is constructed for classification of the ray morphology; this system includes two parameters—the ratio of the numbers of complex to simple rays, characterizing the probability of secondary branching of primary buds, and the number of primary buds, characterizing the probability of primary branching on the surface of the trichome cell. In this parametric space, all of the studied species fit well a third-order curve consisting of two ascending branches displaying a positive correlation between the primary and secondary branchings and a descending branch, located between them, where the primary and secondary branches are negatively correlated. The deduced evolutionary direction is almost independent of the size of the trichome cells and is explained exclusively by the mechanics of morphogenesis: acceleration in the development of the primary bud of the ray decreases the probability of its own branching and creates additional elastic extension of the cell surface, preventing other buds from branching. The morphogenesis itself appears to be a mechanically nonholonomic system, filtering in a selective manner the fluctuations of the same sign, which explains the directed pattern of its evolution. In the evolutionarily initial state, trichome ontogenesis is absent because its modules (primary buds) are formed by a mirror duplication. The ontogenesis commences when mirror symmetry in the formation of modules is lost and replaced with an axial pattern; thus, the change in the morphological type of buds is a direct consequence of the emergence of ontogenesis and its further evolution. Its main material is intraindividual variation, the only source of which is the mechanics of morphogenesis itself. It is found that morphological evolution can take place at an initially zero heritability and zero adaptive value of morphological differences.     

Using X-ray CT based tree-ring width data for tree growth trend analysis

Changes in the environment influence the growth of tree species in Europe. Understanding the drivers of these growth changes is important to predict further growth and adapt forest management. To disentangle the different drivers of growth changes, it is common practice to apply mixed modeling techniques to tree-ring width series. Mixed modeling requires precise, replicated and well cross-dated tree-ring width series. The goal of this study was to compare a recently developed ring width measuring method based on X-ray Computed Tomography images (CT scan) with the standard LINTAB measuring method and to examine whether the same growth trends are detected with both methods using common beech (Fagus sylvatica) and sessile oak trees (Quercus petraea) as a case study. Although the CT scan method has a lower resolution than LINTAB measurements, it is of interest since it measures wood density in addition to ring width and it is less laborious in comparison to standard ring width measuring methods. No significant differences in ring width were found between the two measuring methods. The small non-significant difference between the two methods could largely be explained by the drying of cores needed for CT scanning. The same growth trends were detected with both methods: for common beech and sessile oak in Southern Belgium. These findings suggest that ring widths measured on CT scan images can be used as input for long-term modeling of tree growth changes for the targeted tree species.     

Attachment structures in Rhizotrochus (Scleractinia): macro‐ to microscopic traits and their evolutionary significance

Marine sessile benthic organisms living on hard substrates have evolved a variety of attachment strategies. Rhizotrochus (Scleractinia, Flabellidae) is a representative azooxanthellate solitary scleractinian coral with a wide geographical distribution and unique attachment structures; it firmly attaches to hard substrates using numerous tube‐like rootlets, which are extended from a corallum wall, whereas most sessile corals are attached by stereome‐reinforced structures at their corallite bases. Detailed morphological and constructional traits of the rootlets themselves, along with their evolutionary significance, have not yet been fully resolved. Growth and developmental processes of spines in Truncatoflabellum and rootlets in Rhizotrochus suggest that these structures are homologous, as they both develop from the growth edges of walls and are formed by transformation of wall structures and their skeletal microstructures possess similar characteristics, such as patterns of rapid accretion and thickening deposits. Taking molecular phylogeny and fossil records of flabellids into consideration, Rhizotrochus evolved from a common free‐living ancestor and invaded hard‐substrate habitats by exploiting rootlets of spines origin, which were adaptive for soft‐substrate environments.     

DNA BARCODING: Barcoding corals: limited by interspecific divergence, not intraspecific variation

The expanding use of DNA barcoding as a tool to identify species and assess biodiversity has recently attracted much attention. An attractive aspect of a barcoding method to identify scleractinian species is that it can be utilized on any life stage (larva, juvenile or adult) and is not influenced by phenotypic plasticity unlike morphological methods of species identification. It has been unclear whether the standard DNA barcoding system, based on cytochrome c oxidase subunit 1 (COI), is suitable for species identification of scleractinian corals. Levels of intra- and interspecific genetic variation of the scleractinian COI gene were investigated to determine whether threshold values could be implemented to discriminate conspecifics from other taxa. Overlap between intraspecific variation and interspecific divergence due to low genetic divergence among species (0% in many cases), rather than high levels of intraspecific variation, resulted in the inability to establish appropriate threshold values specific for scleractinians; thus, it was impossible to discern most scleractinian species using this gene.