Hts1 Encodes Both the Cytoplasmic and Mitochondrial Histidyl-Trna Synthetase of Saccharomyces Cerevisiae: Mutations Alter the Specificity of Compartmentation

Wright's method of estimating the number of genes contributing to the difference in a quantitative character between two populations involves observing the means and variances of the two parental populations and their hybrid populations. Although simple, Wright's method provides seriously biased estimates, largely due to linkage and unequal effects of alleles. A method is suggested to evaluate the bias of Wright's estimate, which relies on estimation of the mean recombination frequency between a pair of loci and a composite parameter of variability of allelic effects and frequencies among loci. Assuming that the loci are uniformly distributed in the genome, the mean recombination frequency can be calculated for some organisms. Theoretical analysis and an analysis of the Drosophila data on distributions of effects of P element inserts on bristle numbers indicate that the value of the composite parameter is likely to be about three or larger for many quantitative characters. There are, however, some serious problems with the current method, such as the irregular behavior of the statistic and large sampling variances of estimates. Because of that, the method is generally not recommended for use unless several favorable conditions are met. These conditions are: the two parental populations are many phenotypic standard deviations apart, linkage is not tight, and the sample size is very large. An example is given on the fruit weight of tomato from a cross with parental populations differing in means by more than 14 phenotypic standard deviations. It is estimated that the number of loci which account for 95% of the genic variance in the F2 population is 16, with a 95% confidence interval of 7-28, and the effect of the leading locus is 13% of the parental difference, with 95% confidence interval 8.5-25.7%.     

Effect of recombination in the parent populations on the means and combining ability variances in hybrid populations of maize (<Emphasis Type="Italic">Zea mays</Emphasis> L.)

Recombination of selected genotypes plays a key role in plant breeding for generating new base populations. We investigated the influence of recombination in two parent populations on the means and combining ability variances of their hybrid population by (1) quantitative genetic theory and (2) experiments with maize. The two parent populations were founded by four early flint and four early dent inbred lines, respectively. Each population was studied in three generations: Syn-0, the four inbred lines themselves; Syn*-1, the six intrapool single crosses (SC); and Syn*-2, the three intrapool double crosses (DC). Four interpool hybrid populations were created: (1) all 16 SC and (2) all 36 DC were produced from generations Syn-0 and Syn*-1, respectively, (3) 168 biparental progenies (BIP) of type flint x dent (female x male), and (4) 168 BIP of type dent x flint were produced according to NC-design I with randomly sampled plants of generation Syn*-2. The half-sib and full-sib families obtained in this manner were evaluated for grain yield, dry matter concentration and plant height. According to theoretical results, differences in the population means of these hybrid populations indicate the presence of various types of epistasis. Changes in combining ability variances from SC to DC reflect different levels of parental inbreeding (F = 1 vs F = 0), whereas changes from DC to BIP only reflect the effects of recombination and are attributable to covariances between additive and dominance effects caused by linkage disequilibrium in the Syn-0 generations. The experimental results showed a significant decline in yield from DC to BIP due to a loss of gene combinations with favourable epistatic effects. Estimates of sigma(2)(GCA) attributable to flint or dent lines decreased or remained unchanged from SC to DC, but generally increased in the BIP populations. The consequences of these trends for developing improved interpool hybrids are discussed.     

Effects of linkage and interaction in a comparison of theoretical populations derived by diploidized haploid and single seed descent methods

Summary Comparisons were made between the genetic means and variances of a quantitative trait determined by 8 loci in simulated populations of lines derived by diploidizing haploids (DH) on the one hand and by single seed descent (SSD) on the other.In the absence of linkage no differences between the populations were observed, but when linkage was present, recombination was more frequent in the SSD populations as indicated by the relative differences in variance between these and the DH populations. In addition, differences in means between the populations derived by the two methods were observed when non-allelic interaction was present. The direction and magnitude of the differences in both means and variances depended upon the linkage phase, the recombination frequency and the presence or absence of interaction.The conclusion was drawn that the SSD method was to be preferred from theoretical considerations although in practice the choice of method will also depend upon practical and technical factors.     

Cytogenetic features of the blood-sucking blackfly Wilhelmia paraequina Puri (Diptera: Simuliidae) from Armenia

Three blackfly Wilhelmia paraequina populations of Armenia (rivers Debet and Megriget, channel Megri) were studied. 2n = 6: IS + IIL, IIS + IL, IIIS + IIIL. Cytological maps of polytene chromosomes were constructed. High inversion polymorphism (95.63%) was observed, with 2.6 inversions per individual. Three inversions proved to be associated with male development: Y1 was characterized by a combination of two heterozygous inversions, IIL-3 + IIL-1, while Y2 had another combination of heterozygous inversions, IIL-5 + IIL-3. The X chromosome had a standard homozygous IIL disk sequence. The populations were shown to be similar in autosomal polymorphism. A tendency for differentiation was observed with respect to frequencies and types of sex-linked inversions: the sex determination system was Y1X-XX in the Debet and Megriget populations and Y2X-XX in the channel (Megri) population. On the strength of these findings, one W. paraequina morphotype was assumed to involve two cytotypes, A (Debet and Megriget populations) and B (Megri population).     

Both costs and benefits of sex correlate with relative frequency of asexual reproduction in cyclically parthenogenic Daphnia pulicaria populations

Sexual reproduction is generally believed to yield beneficial effects via the expansion of expressed genetic variation, which increases the efficiency of selection and the adaptive potential of a population. However, when nonadditive gene action is involved, sex can actually impede the adaptive progress of a population. If selection promotes coupling disequilibria between genes of similar effect, recombination and segregation can result in a decrease in expressed genetic variance in the offspring population. In addition, when nonadditive gene action underlies a quantitative trait, sex can produce a change in trait means in a direction opposite to that favored by selection. In this study we measured the change in genotypic trait means and genetic variances across a sexual generation in four populations of the cyclical parthenogen Daphnia pulicaria, which vary predictably in their incidence of sexual reproduction. We show that both the costs and benefits of sex, as measured by changes in means and variances in life-history traits, increase substantially with decreasing frequency of sex.     

外来入侵植物北美车前繁殖及光合生理生态学研究

 北美车前（Plantago virginica）原产北美,20世纪50年代进入我国华东地区,近年来其种群呈现爆发式增长态势,已分布到上海、浙江、江西、江苏等省区,是一种典型的生态入侵种。本文计测了该种在不同密度下的繁殖指标,统计了种群密度与繁殖指标间的关系;应用LAC-4 (ADC英国)光合和蒸腾系统测定了该种及其伴生杂草一年蓬（Erigeron annuus）、小飞蓬（Conyza canadensis）、野塘蒿（Conyza bonarinsis）、马缨丹（Lantana camara）、空心莲子草（Alternathera philoxeroides）、菊芋（Helianthus tuberoses）、蓖麻（Ricinus communis）、紫茉莉（Mirabilis jalapa）、车前（Plantago asiatica）、苦苣菜（Sonchus oleraceus）、羊蹄（Rumex japonicus）、藜（Chenopedium album）和黄鹌菜（Youngia japonica）等杂草的光合作用指标,作出了它们的光合 光响应曲线。主要实验结果有：1）北美车前个体花穗重（Y1）、花数／穗（Y2）与种群密度（X）呈现倒数关系（Y1 = 0.138 2+15.959 8/X, Y2 = 46.306 9+6 914.07/X）;随着种群密度增加,北美车前的繁殖投资（Y3）、与繁殖投资关系密切的种子数／营养器官重（Y4）呈线性增加（Y3 = 0.046 9＋0.000 2X,Y4 = 130.24＋0.023 9 X）; 2） 随着北美车前种群密度的增加,个体间的大小不整齐性（Y5）变小(Y5 = 0.374 8 - 0.000 02X);　3）种群个体间大小不整齐性（Y5）与繁殖投资（X）呈明显负相关(Y5 = 0.379 3 - 0.106 6 X),即随着个体大小不整齐性的增加,北美车前种群的繁殖投资减少;4）以自然条件下测得的光合作用数据为基础,拟合得到了北美车前及其它13种伴生杂草的光合 光响应曲线。北美车前的光合 光响应曲线符合Y= - 7E-06X2+0.022 3X-0.831 2,光补偿点、光饱和点和最大净光合速率分别为37.32 μmol·m－2·s－1、159 3 μmol·m－2·s－1和16.93 μmol CO2·m－2·s－1,说明北美车前是典型的阳生杂草。从光补偿点分析,北美车前的耐荫能力比车前、黄鹌菜、小飞蓬、一年蓬、野塘蒿、蓖麻、加拿大一枝黄花(Solidago canadensis)、苦苣菜、羊蹄和马缨丹的要弱;北美车前净光合速率比一年蓬、小飞蓬、野塘蒿和加拿大一枝黄花等要低些,但是比藜、苦苣菜、蓖麻等的要高,与同属的车前比较接近;5）在5月下旬,杂草性极强的一年蓬、小飞蓬和空心莲子草的光合午休现象不明显,逸生杂草紫茉莉具有明显的光午休现象,北美车前是早春杂草,在5月下旬也有明显的光合午休现象,反映出该种不能够很好地适生于5月下旬的高温强光环境。通过分析,得出如下结论：1）随着种群密度的增加,北美车前产生种群自疏作用,使个体大小不整齐性下降;高密度给北美车前种群造成某种逆境状态,种群以r-对策的生存方式适应环境,提高其繁殖投资,产生尽可能多的种子,以保证后代的生存,这反映出北美车前在繁殖策略上灵活的调节能力;2）北美车前种群在定居后,如果定居点不再受到人为干扰,其种群将被快速更替,这与其粘液性的种子、较高的光补偿点有关;3）通过保护植被,定植高秆植物,减少对环境的干扰,能够有效地治理该外来杂草。     

Variability of recombination frequencies in the Iowa Stiff Stalk Synthetic (Zea mays L.)

Variability in recombination frequency has been reported in several plant populations. The objectives of the present research were to establish the range in variability in recombination among genotypes in the important corn population Iowa Stiff Stalk Synthetic and to identify individual genotypes which produced increased or decreased recombination frequencies. Approximately 150 individual S₀ plants were testcrossed to measure male recombination frequency on three chromosomes: 4, sul-c2; 5, a2-btl-pr1; and 9, sh1-bz1-wx1. Although the variance component for individuals accounted for only 20–33% of the total variation, highly significant variability among individuals was present at all chromosome regions. Thus the environmental effects did not prevent measurement of differences between S₀ individuals. At each chromosome region, individual genotypes with recombination frequencies at least two standard deviations above or below the population mean were isolated. Reports in the literature suggest that the variability reported here for the BSSS population should be representative of that present in other corn breeding populations. Recombination frequencies were positively correlated between adjacent regions of chromosome 9 and also between adjacent regions of chromosome 5. Recombination frequencies were positively correlated between both regions on chromosome 5 with the su1-c2 region of chromosome 4. Negative correlations were observed between chromosome 9 recombination and recombination in each region of chromosomes 4 and 5. Thus rankings of S₀ individual recombination frequencies were not consistent for all three chromosomes.     

Genetic linkage map of Coffea canephora: effect of segregation distortion and analysis of recombination rate in male and female meioses.

Two complementary segregating plant populations of Coffea canephora were produced from the same clone. One population (DH) comprised 92 doubled haploids derived from female gametes, while the other population (TC) was a test cross consisting of 44 individuals derived from male gametes. Based on the DH population, a genetic linkage map comprising 160 loci was constructed. Eleven linkage groups that putatively correspond to the 11 gametic chromosomes of C. canephora were identified. The mapped loci included more than 40 specific sequence-tagged site markers, either single-copy RFLP probes or microsatellites, that could serve as standard landmarks in coffee-genome analyses. Furthermore, comparisons for segregation distortion and recombination frequency between the two populations were performed. Although segregation distortions were observed in both populations, the frequency of loci exhibiting a very pronounced degree of distortion was especially high in the DH population. This observation is consistent with the hypothesis of strong zygotic selection among the DH population. The recombination frequencies in both populations were found to be almost indistinguishable. These results offer evidence in favour of the lack of significant sex differences in recombination in C. canephora.     

Analysis of allele frequency of seven microsatellite loci of Y chromosome in three Tuva populations

The allele frequency distribution of seven microsatellite loci of the nonrecombining region of the Y chromosome (Y-STRs) was analyzed in three geographically distant indigenous populations of the Tuva Republic. The populations did not differ in allele frequency distribution of the seven Y-STRs. The Y-chromosome microsatellite loci in Tuvinians showed a high diversity (H = 0.575) that was nearly identical in all three populations. The genetic distance Ddm between the three populations was low, suggesting no subdivision of the modern male population of Tuva. Estimates of the period of linear changes in Ddm showed that Y-chromosome microsatellites can be used to reconstruct evolutionary events dating back no more than 40,000-50,000 years. The problems of human population phylogeny are discussed on the basis of data on Y-chromosome STRs.     

Methodology and Accuracy of Estimation of Quantitative Trait Loci Parameters in a Half-Sib Design Using Maximum Likelihood

Maximum likelihood methods were developed for estimation of the six parameters relating to a marker-linked quantitative trait locus (QTL) segregating in a half-sib design, namely the QTL additive effect, the QTL dominance effect, the population mean, recombination between the marker and the QTL, the population frequency of the QTL alleles, and the within-family residual variance. The method was tested on simulated stochastic data with various family structures under two genetic models. A method for predicting the expected value of the likelihood was also derived and used to predict the lower bound sampling errors of the parameter estimates and the correlations between them. It was found that standard errors and confidence intervals were smallest for the population mean and variance, intermediate for QTL effects and allele frequency, and highest for recombination rate. Correlations among standard errors of the parameter estimates were generally low except for a strong negative correlation (r = -0.9) between the QTL's dominance effect and the population mean, and medium positive and negative correlations between the QTL's additive effect and, respectively, recombination rate (r = 0.5) and residual variance (r = -0.6). The implications for experimental design and method of analysis on power and accuracy of marker-QTL linkage experiments were discussed.     

Reciprocal Recombination and the Evolution of the Ribosomal Gene Family of Drosophila Melanogaster

The role of reciprocal recombination in the coevolution of the ribosomal RNA gene family on the X and Y chromosomes of Drosophila melanogaster was assessed by determining the frequency and nature of such exchange. In order to detect exchange events within the ribosomal RNA gene family, both flanking markers and restriction fragment length polymorphisms within the tandemly repeated gene family were used. The vast majority of crossovers between flanking markers were within the ribosomal RNA gene region, indicating that this region is a hotspot for heterochromatic recombination. The frequency of crossovers within the ribosomal RNA gene region was approximately 10(-4) in both X/X and X/Y individuals. In conjunction with published X chromosome-specific and Y chromosome-specific sequences and restriction patterns, the data indicate that reciprocal recombination alone cannot be responsible for the observed variation in natural populations.     

Male meiosis and behaviour of sex chromosomes in different populations of Rumex acetosa L. from the Western Himalayas, India

Detailed meiotic analysis in 28 North West Himalayan populations of dioecious plant Rumex acetosa L. was carried out. The species is generally discussed as an important plant having sex chromosomes. Male meiosis in all the studied populations clearly showed the formation of six bivalents and one trivalent during diakinesis and metaphase-I. The sex chromosomes in male plants exhibit a chain of trivalent (Y₁–X–Y₂). In addition, among the presently investigated populations ring-shaped trivalents were also observed for the first time in the species. Varied frequency of abnormal segregation of sex trivalent was also observed leading to XY:Y segregation instead of normal X:Y₁Y₂ segregation. A majority of the populations exhibit normal meiosis. Plants of six populations show meiotic abnormalities like cytomixis, laggards, bridges, chromatin stickiness, etc., leading to reduced pollen fertility. Translocation between an autosome and sex chromosomes was also observed in some of the populations. 0–1B chromosomes were noticed in one population. This is the first ever meiotic analysis of the species from India.     

Sperm age, sex ratio, and hyperhaploidy frequency in mice.

Physiologically aged and unaged sperm from each of 12 sexually mature B6SJLF1/J mice were used to fertilize oocytes from females of the same strain, with each male serving as its own control. Male genomes in 323 and 307 first-cleavage metaphases obtained by in vivo and in vitro fertilization, respectively, were analyzed cytogenetically, using C-banding for detection of the Y chromosome. The sex (X:Y) ratio among all zygotes resulting from in vivo fertilization was 1.18; in zygotes resulting from in vivo fertilization by aged (14-d mating intervals) sperm, however, the ratio was 1.53, which differed significantly (chi 2 = 6.72, P less than 0.01) from the theoretical value of 1.00. Comparison of the sex ratio in zygotes resulting from in vivo fertilization by unaged sperm (3-d mating intervals), 0.94, with that in zygotes resulting from fertilization by aged sperm (using a 2 x 2 contingency table) showed a significant (chi c2 = 4.19, P less than 0.05) relationship between sex ratio and sperm age. In vitro neither the combined nor the individual 3- and 14-d data deviated significantly from the expected sex ratio of 1.00. The frequency of sperm-derived hyperhaploidy did not differ significantly between the in vivo (3.4%) and in vitro (5.9%) populations, but did between unaged (2.5%) and aged (6.8%) sperm (chi c2 = 5.74, P less than 0.01). All hyperhaploid zygotes had a complement of n + 1 chromosomes, except the 14-d in vitro group, where complements of n + 2 and n + 3 chromosomes were seen. Sperm-derived polyploidy, which was observed only in the in vitro group, was independent of sperm age and occurred in 6.8% of the zygotes. These data provide support for the sperm-aging hypothesis and indicate, for the first time, an influence of sperm aging in the male genital tract on the X:Y ratio of conceptuses resulting from natural matings of chromosomally normal males.     

山东汉、回族男性人群父系遗传结构研究

本研究基于75个Y-SNP位点和23个Y-STR基因座对山东汉、回族男性人群进行研究,旨在揭示两个人群的父系遗传结构,为法医学应用及群体遗传学等提供基础数据。研究基于微测序技术检测187份山东汉族和130份山东回族样本,获取75个Y-SNP位点分型;采用PowerPlex^®Y23试剂盒检测23个Y-STR基因座;采用直接计数法统计等位基因频率、单倍型频率及单倍群频率,根据公式D=n(1-∑pi²)/(n-1)计算基因多样性、单倍型多样性以及单倍群多样性;根据Median-joining方法,使用NETWORK 5.0和NETWORK Publisher构建并展示网络图。研究结果显示,单倍群O-M175、C-M130、N-M231、Q-M242为山东汉族男性人群主要的Y单倍群,单倍群O-M175、J-M304、R-M207、C-M130、N-M231为山东回族男性人群最主要的单倍群;23个Y-STR基因座在山东汉族男性样本中检出187种单倍型,单倍型多样性为1.0000,在山东回族中检出121种单倍型,单倍型多样性为0.9988;网络图显示同一Y单倍群的样本相对独立地聚集在一起,山东汉族与回族人群之间存在共享单倍群,同时也存在一些特异性单倍群,如单倍群J-M304、R-M207均以山东回族为主,单倍群Q-M242则以山东汉族为主。山东汉族和回族男性人群的主要单倍群均为单倍群O-M175;单倍群J-M304、R-M207在山东回族中的高频分布,单倍群Q-M242则在山东汉族中高频分布。研究表明山东回族人群中保留有一定比例的欧亚西部和中东特有的Y染色体类型。     

Genetic load and coadaptation of chromosomal inversions. II. O-chromosomes in Drosophila subobscura populations

We have analysed the inversion polymorphism and genetic load of O-chromosomes in three populations of D. subobscura from southeastern Europe. As expected for a central populations the inversion polymorphism was extensive. In a like fashion, the genetic load, in particular the frequency of lethals, was heavy in all three populations. There were significant differences in the frequency of moderately deleterious genes. These differences in viability can be attributed to balancing selection. A comparison of these two kinds of genetic polymorphism indicates that there are differences in mean viability among different gene arrangements of O-chromosomes in the three populations. The differences observed are due to an unequal distribution of various viability classes among O-chromosome gene arrangements. We here show for the first time a specific distribution of lethal genes among these arrangements within the Palearctic distribution area of D. subobscura. The lethal allelism test showed lethals are non-randomly associated with the Ost gene arrangement. The amount of genetic load is heavy in gene arrangements with a high frequency, in comparison with the ones with a low frequency. Lethal genes may be protected in combinations of low and moderate frequency gene arrangements that harbor more lethal genes, as the Ost in the one population. Some arrangements that are less protected against recombination have a higher load than ones that are more protected against recombination. This can be taken as evidence for coadaptation.     

The cytogenetic structure of Tasmanian populations of Phaulacridium vittatum

In 8 out of 20 Tasmanian populations of Phaulacridium vittatum from 0.3-11.0 percent of the males carried a single supernumerary chromosome. In such males the X and B univalents are both heteropycnotic at first prophase of male meiosis and associate with another in a non-homolgous manner in about two-thirds of the diplotene cells examined. In all 56 B-containing individuals studied, however, these associations lapse by first metaphase and the X and the B move at random with respect to one another at first anaphase. The supernumerary in this species is stable and only 5 of the 56 individuals with supernumeraries showed evidence of B-chromosome non-disjunction in the pre-meiotic mitoses. Since there was no other evidence for the loss or gain of supernumeraries in the male line it is clear that B-transmission is regular in the males of this species. There were significant differences between population with respect to mean cell chiasma frequency but there was no significant effect of the B-chromosome on this metric. Additionally a comparison of mean cell chiasma frequency in follicles with and without supernumeraries from a mosaic individual shows no significant difference.     

外来杂草薇甘菊种群分布格局研究

在3个群落中设置样方,采用方差/均值比率法测定了薇甘菊种群的分布格局类型。结果表明,薇甘菊种群的分布格局主要受自身的生物学特征和微环境的影响,呈随机或集群分布。随机分布的种群其聚集强度指标扩散型指数、丛生指数、聚块性指标和平均拥挤度多对1.0没有显著的偏离,负二项参数则较大;而聚集分布的种群其聚集强度指标则符合聚集特征。     

A medico-genetic study of the population of Western Pamir. VI. Local genetic differentiation in the populations of Western Pamir]

The article comprises the results on the analysis of the structure of the great Pamirs' population (of a higher rank) and of one of its parts, the subpopulation of the valley of the river Bartang. Wright's F coefficient was used for the statistical treatment of the data obtained in the course of the analysis. The FST estimates were obtained from the variances of the frequencies of the genes located in 5 loci (ABO, MN, P, Rh and P.T.C.) culculated for 23 samples of the great populations of the Pamirs and for 9 samples of the population of the Bartang river valley. The general inbreeding coefficient for the Pamirs FIT=0,0323, its random component FST=0,0017 and the non-random component FIS=0.0306.     

The variability of mating signals and preferences in the brown planthopper,Nilaparvata lugens (Homoptera: Delphacidae)

Male and female brown planthoppers, Nilaparvata lugens(Stål) (Homoptera: Delphacidae), exchange substrate-transmitted signals prior to mating. The pulse repetition frequency of the male song is known to be involved in mate recognition and also to vary among geographical populations. Here the variability of male signals, female signals, and female preferences has been examined within a population. Female preference variation has been partitioned into variation in mean preference and variation in the window of preference of individuals. The genetic component of variation has been examined using isofemale lines. Male signal variation was limited (CV=8%) and was mainly within individuals. Female signal variation was greater (CV=15%). Female mean preference varied little (CV=10%) and was closely matched to the male signal mean, but the preference window was wide (> 4 male signal standard deviations on average) and variable (CV=56%). There was evidence for genetic variation only for preference window. These results are discussed in relation to theories of signal system evolution.     

The genetic conditions in heterozygous and homozygous populations of Drosophila. II. X-ray induced lethals in a homozygous and a heterozygous population

Strains of Drosophila melanogaster were made isogenic for their second chromosomes by means of the marker strain LCy/Pm. One of these strains was used as a founder for a homozygous experimental population (W). All other strains were mixed and established a heterozygous population (LKW). Both populations were free of lethals in the beginning with respect to their second chromosomes. After they had been exposed to an X-ray irradiation of 7000 r they contained about 26 per cent newly induced lethal chromosomes. Whereas in the heterozygous population the lethal frequency decreased rather fast to 10 per cent, that of the homozygous population remained rather constant at 25 per cent during a period of 135 days. After a year of continuation, however, both populations reached the same lethal frequency of about 10 per cent. Allelism tests carried out after 10 generations revealed that there was a highly heterotic lethal factor in the homozygous population. After excluding this heterotic lethal from the calculations, the lethal frequencies of the two populations remained significantly different. It was assumed that the relative mean fitness of lethal heterozygotes was generally higher in the homo-than in the heterozygous populations. The results indicate that homozygous populations are much more capable of incorporation new mutations than heterozygous.