A source of error in the rat diaphragm assay of insulin

The radioautographs and statistical data presented herein indicate that the uptake of glucose [¹⁴C] into rat diaphragm sections does not depend solely on the insulin concentration of the incubation medium. It is shown that by taking into account the tissue weight of the diaphragm section, a linear relationship for uptake vs log (insulin concentration) may be obtained. This serves to emphasize how careful one must be when modifying a biological assay so that previously unimportant conditions do not become significant enough to invalidate the results.     

The effect of chronic ethanol consumption on temperature-dependent physical properties of liver mitochondrial membranes

We have reported that the monovalent ionophore monensin causes undersulfated chondroitin sulfate biosynthesis in cultured chondrocytes. In order to clarify the mechanism of this diminished sulfation, we have measured the rate of incorporation of sulfate into chondrocytes and assayed the cellular ATP levels. We have also measured sulfatase activity, the incorporation of ³⁵SO₄ into 3′-phosphoadenosine 5′-phospho[³⁵S]sulfate and endogenous sulfotransferase activity in the cell-free extracts. We find that: (1) The incorporation of ³⁵SO₄ into the free sulfate pool in chondrocytes was not inhibited by monensin. (2) The ATP levels of monensin-treated chondrocytes were the same as control cells. (3) There was no sulfatase activity in both control and monensin-treated chondrocytes. (4) Enzymatic analyses revealed that ³⁵SO₄ incorporation into 3′-phosphoadenosine 5′-phospho[³⁵S]sulfate and subsequent sulfotransferase activity were not inhibited in the presence of monensin. At present the most tenable hypothesis to account for monensin causing undersulfated chondroitin sulfate synthesis is that the ionophore impairs the access of proteoglycans to the sulfotransferases in the luminal walls of the Golgi structures.     

A prolyl endopeptidase from murine macrophages, its assay and specific inactivation

The presence of a prolyl endopeptidase in the soluble fraction of murine peritoneal macrophages is reported. The prolyl endopeptidase is apparently highly specific for cleaving peptides after proline residues. A sensitive new fluorogenic assay substrate matching this specificity, benzyloxycarbonyl-Ala-Ala-Pro beta-methoxynaphthylamide, is described. The enzyme is rapidly inactivated by benzyloxycarbonyl-Ala-Ala-Pro diazomethyl ketone, one of a class of reagents specific for cysteine proteinases, and by diisopropyl fluorophosphate, an inhibitor of serine proteinases. Culture of macrophages with the addition of low levels of benzyloxycarbonyl-Ala-Ala-Pro diazomethyl ketone to the media allows the selective inhibition of the cytoplasmic enzyme as measured in lysates at the termination of culture. After exposure to inhibitor, macrophages resynthesize the enzyme over a period of days, a process which is inhibited by cycloheximide. Similar amounts of activity were found in both normal peritoneal macrophages and those elicited by prior injection of thioglycollate media. The enzyme from murine macrophages appears similar to that reported in bronchopulmonary lavage fluid and lung tissue and to those isolated from brain and pituitary tissues.     

Crystallographic determination of the mode of binding of oligosaccharides to T4 bacteriophage lysozyme: Implications for the mechanism of catalysis

Phage lysozyme has catalytic activity similar to that of hen egg white lysozyme, but the amino acid sequences of the two enzymes are completely different.The binding to phage lysozyme of several saccharides including N-acetylglucosamine (GlcNAc), N-acetylmuramic acid (MurNAc) and (GlcNAc)₃ have been determined crystallographically and shown to occupy the pronounced active site cleft. GlcNAc binds at a single location analogous to the C site of hen egg white lysozyme. MurNAc binds at the same site. (GlcNAc)₃ clearly occupies sites B and C, but the binding in site A is ill-defined.Model building suggests that, with the enzyme in the conformation seen in the crystal structure, a saccharide in the normal chair configuration cannot be placed in site D without incurring unacceptable steric interference between sugar and protein. However, as with hen egg white lysozyme, the bad contacts can be avoided by assuming the saccharide to be in the sofa conformation. Also Asp20 in T4 lysozyme is located 3 Å from carbon C₍₁₎ of saccharide D, and is in a position to stabilize the developing positive charge on a carbonium ion intermediate. Prior genetic evidence had indicated that Asp20 is critically important for catalysis. This suggests that in phage lysozyme catalysis is promoted by a combination of steric and electronic effects, acting in concert, The enzyme shape favors the binding in site D of a saccharide with the geometry of the transition state, while Asp20 stabilizes the positive charge on the oxocarbonium ion of this intermediate. Tn phage lysozyme, the identity of the proton donor is uncertain. In contrast to hen egg white lysozyme, where Glu35 is 3 Å from the glycosidic DOE bond, and is in a non-polar environment, phage lysozyme has an ion pair, Glull … Arg145, 5 Å away from the glycosidic oxygen. Possibly Glull undergoes a conformational adjustment in the presence of bound substrate, and acts as the proton donor. Alternatively, the proton might come from a bound water molecule.     

Hyperoxia increases oxygen radical production in rat lung homogenates

Lung damage during hyperoxia has been postulated to be due to increased rates of local organ oxygen radical production. Lung homogenate respiration was inhibited with cyanide, and residual respiration was used as an indicator of electron diversion to O₂^? and H₂O₂. Cyanide-resistant respiration in lung homogenates, supplemented with 1 mm NADH, increased linearly with oxygen tension, and accounted for 7% of total respiration in air and for 17% of total respiration when homogenates were incubated in 80% oxygen. Exposure of rats to 85% oxygen for 7 days induces tolerance to the lethal effects of 100% oxygen. Rats which previously breathed 85% oxygen for 7 days had a greater CN^?-resistant respiration than control rats. This implies that adaptation to hyperoxia does not include decreased lung tissue oxygen radical production as indicated by CN^?-resistant respiration. One possible explanation for the increased CN^?-resistant respiration in oxygen tolerant rat lungs is that they contain increased cell mass. Lung homogenates of rats exposed to 85% oxygen for 7 days also had 2.5 times greater thiobarbituric acid positive material than controls, indicating that increased lung lipid peroxidation occurs as a consequence of hyperoxia. Incubation of normal rat lung homogenates under hyperoxic conditions also acutely increased lipid peroxidation, which could be inhibited by both superoxide dismutase and catalase. This confirms that hyperoxia enhances cellular production of O₂^? and H₂O₂ and implies an essential role for both O₂^? and H₂O₂ in hyperoxic lung damage.     

Reversed micelles to mimic the active site of metalloenzymes

The structure and reactivity of cobalt(II), nickel(II), and copper(II) halides have been investigated in 0.20 M CTAX (X = Cl, Br) |CHCl₃ reversed micelles. The former two metal ions adopt a tetrahedral configuration at low water concentrations in the micelle. The tetrahedral complexes are converted to octahedral aqua complexes by increasing the water concentration (solvochromism) or by lowering the temperature (thermochromism). Upon reaction with imidazole, the tetrahedral cobalt and nickel halide complexes also undergo a structural transformation into an octahedral configuration with imidazole coordination. At low water concentrations, copper halides form a polynuclear complex bridged by halide ions and these halogen bridges are easily broken upon addition of water or imidazole. The copper complexes produced by reaction with imidazole were deduced to be CuIm₂X₂ and CuIm₄X₂ at intermediate and high ligand concentrations, respectively. It was also found that the cupric ion in reversed micelles is readily reduced to the cuprous ion with 2-mercaptoethanol, and the cuprous ion is oxidized to the cupric ion by reaction with hydrogen peroxide.     

A systematic approach to the comparison of protein structures

A systematic method has been developed for comparing the backbone conformations of proteins (Remington & Matthews, 1978). Two proteins are compared by successively optimizing the agreement between all possible segments of a chosen length from one protein, and all possible segments of the same length from the other protein. The method reveals any similarities between the two proteins, and provides an estimate of the statistical significance of any given structure agreement that is obtained.The method has been tested in a number of cases, including comparisons of the dehydrogenases and of the pancreatic and bacterial serine proteases. These examples were chosen to test the ability of the comparison method to detect structural similarities in the presence of large insertions and deletions. The results suggest that the detection of the “nucleotide binding fold” in the dehydrogenases is at the limit of the capability of the comparison technique in its original form, although it may be possible to generalize the method to allow for insertions and deletions in proteins.The results of many protein comparisons, made with different probe lengths, are summarized. For medium and long probe lengths, the average value of the structural agreement does not depend very much on the type of protein being compared. The average value of the structure agreement increases with the square root of the probe length, but for probe lengths above about 40 residues, the standard deviation is independent of probe length. From these observations it is possible to construct a generalized probability diagram to evaluate the significance of any structure agreement that might be obtained in comparing two proteins.     

The determination of the binding constant of metalloenzymes for their active site metal ion from ligand inhibition data: Theoretical analysis and application to the inhibition of thermolysin by 1,10-phenanthroline

An equation is found relating the fractional activity, (v/v₀), of an enzyme assay mixture to the total concentrations of metalloenzyme, active site metal ion, metal-binding ligand and substrate and the stability constants of the complexes present. When (v/v₀) is measured as a function of the total ligand concentration, this equation offers a way of data-plotting which yields straight lines and permits the calculation of the metal-binding constant K_ME from either the slope or the intercept, provided that mixed complexes (enzyme-metal ion-ligand) do not contribute significantly to the change in (v/v₀). Since deviations from linearity occur in the latter case, the proposed inhibition plot serves as a diagnostic tool for the recognition of such complexes. Application to the inhibition of thermolysin by 1,10-phenanthroline gives a value of 2.1 × 10¹¹m⁻¹ for K_ZnE, the binding constant of the active site zinc ion, at pH 7.50, 25°C and ionic strength 0.1. The equation also allows the rapid calculation of the ligand concentration necessary to attain a desired degree of inhibition when the total enzyme and active site metal ion concentrations of the solution are known.     

Calculation of protein volumes: An alternative to the Voronoi procedure

All the methods that have been applied to assessing local volume occupation or packing in proteins have particular defects. For example, the Voronoi method used by Richards (method A) and by Finney misallocates both non-bonded and covalent contacts in a geometrically rigorous, though chemically inconsistent, manner. Richards' method B, in which covalent and non-bonded contacts are partitioned in chemically sensible ways, is unfortunately not completely rigorous, in that every polyhedron vertex has associated with it a small vertex-error polyhedron, which is not allocated to any atom.We present here a generalization of the Voronoi method that is particularly suited to multicomponent assemblies such as proteins. This radical plane partitioning of volume is completely rigorous; it gives rise to no vertex error, and handles the more numerous non-bonded contacts realistically. Its application to RNAase-S is described and the results compared with both Voronoi's method and Richards' method B. A particular advantage of both the radical plane and Richards' methods is a relative insensitivity to the treatment of the surface, a problem that has plagued other approaches to describing packing in proteins. Although the radical plane is seen to misallocate volume chemically between covalently-bonded neighbours, this problem vanishes when groups of atoms in side-chain residues are considered.     

A scanning dual wavelength spectrophotometer: Application to the study of photosynthetic electron transport

A dual wavelength scanning spectrophotometric method for the analysis of small absorbance changes in turbid suspensions is presented, which improves upon the point by point method of obtaining difference spectra in terms both of accuracy and rapidity. Examples are shown of the application of this instrument, in conjunction with a computer curve-resolving routine, to problems in photosynthetic electron transport.     

Steric effects on activation energy for the electrochemical oxidation of organocobaloximes

Heterogeneous electron transfer rate constants were determined as a function of electrode potential for one-electron oxidation in acetonitrile (AN) at O °C of a series of organocobaloximes [R-Co(DH)₂L] bearing widely different organic groups. Reaction entropies were determined by voltammetric half-wave potential (E^r_{$\text{1}\text{2}$}) measurements in a non-isothermal cell. The electron transfer coefficients and reorganization parameters were calculated following the Marcus theory. The reaction free energies relative to a reference couple ΔG° are linearly correlated with the polar Taft constant of the organic substituent R.The steric effects on ΔG° are shown by the correlation of E^r_{$\text{sol1}\text{2}$} with the CoC bond distance.Assuming constancy of double layer effects along the series in the given solution composition, the trends of the apparent rate constants k_app were considered in order to evaluate the effects of the nature of the organic ligand on the activation energy ΔG³ of the electron transfer. The steric effects on ΔG³ are pointed out i.a. by consideration of the relationship between ΔG³ and ΔG°.     

A simple qualitative method for the detection of nucleases

A method has been developed for growing cultured cells in 200-μl capillary pipets in order to measure the uptake and release of materials by the cells. Feeding is accomplished by means of continuous superfusion of culture medium over the cells. The technique virtually eliminates problems caused by cultured cells detaching from the substratum during experiments and has been used to study the depolarization-dependent processes of [³H]-acetylcholine release and ²²Na⁺ uptake by NG108-15 neuroblastoma × glioma hybrid cells.     

Significance of the polar lobe for the determination of dorsoventral polarity in Dentalium vulgare (da Costa)

The development of dorsoventral polarity in Dentalium dentale has been analyzed after inhibiting first polar lobe formation with cytochalasin B and bisecting the egg into two equal parts at an early trefoil stage. Cleavage pattern and morphogenesis have been studied in both in vivo and permanent cytological preparations. After bisecting the egg, each blastomere may fuse with its adhering polar lobe half and subsequently behave as a CD blastomere. The polar lobe substance may induce both halves to develop an apical tuft and probably also a posttrochal region. Cytochalasin B embryos which pass through an equal first cleavage form a four-cell stage in which the two D blastomeres are situated opposite or adjacent to each other (CDCD or CCDD embryos, respectively). During further development the larvae show a duplication of lobe-dependent structures. It is concluded that dorsoventral polarity originates epigenetically by fusion of the polar lobe with one of the first two blastomeres and is not preformed in the uncleaved egg.     

Relationship of the reduction-oxidation state to protein degradation in skeletal and atrial muscle

Changes in proteolysis were correlated with the cell reduction-oxidation state in rat diaphragm and atrium. Protein degradation was measured in the presence of cycloheximide as the linear release of tyrosine into the medium. Intracellular ratios of lactate/pyruvate, total $\text{NADH}\text{NAD}$, and malate/pyruvate were used as indicators of the muscle reduction-oxidation state. Incubation of diaphragms with leucine (0.5–2.0 mm) or its transamination product, sodium α-ketoisocaproate (0.5 mm), resulted in a lower rate of proteolysis and a higher ratio of lactate/pyruvate and $\text{NADH}\text{NAD}$. These effects of leucine could be abolished by inhibiting its transamination with l-cycloserine. Unlike leucine, neither isoleucine nor valine alone produced any change in these parameters. Incubation of diaphragms with glucose (20 mm) or atria with sodium lactate (2 mm) produced a diminution of tyrosine release from the muscles and a rise in the ratio of total $\text{NADH}\text{NAD}$. Similarly, in incubated diaphragms of fasted rats, the anabolic effects of insulin, epinephrine and isoproterenol on protein degradation were associated with a higher malate/pyruvate ratio. In catabolic states, such as fasting, cortisol treatment of fasted, adrenalectomized rats or traumatization, enhanced muscle proteolysis was observed. Fresh-frozen diaphragms from these rats had both lower lactate/pyruvate and malate/pyruvate ratios than did muscles from control animals. These data show that diminution of proteolysis in diaphragm is accompanied by an increase of the $\text{NAD(P)H}\text{NAD(P)}$ ratios. In contrast to these findings, chymostatin and leupeptin, which inhibit directly muscle proteinases, caused a decrease of the lactate/pyruvate and malate/pyruvate ratios. These results suggest that protein degradation in diaphragm and atrium is linked to the cellular redox state.     

Experimental access to the molecular and electronic structures of organo-f-element complexes by NMR spectroscopy

The main objective of this survey is to demonstrate that by extensive assessment of variable temperature ¹H NMR data obtained on paramagnetic f-element complexes in solution, not only valuable information on details of the molecular structure, but also on the electronic structure may be deduced. One of the most informative quantities to arrive at is the paramagnetic anisotropy term, χ∥ - χ⊥, of axially symmetric molecules from which, if the bulk susceptibility $\text{χ}$ is also known, the crystal-field sensitive parameters χ∥ and χ⊥ can be derived.The majority of the examples considered belong to the widely studied type [Cp₃^fML_n]^q (Cp = η⁵C₅H₄R); ^fM = Pr(III), Nd(III), Yb(III) and U(IV); n = 0, 1 and 2; q = 0 or ?1) and to the uranocene family. The survey also includes the two sub-classes of novel anionic complexes [Cp₃LnL]^? and [(Cp₃Ln)₂(μ-L)]^?, respectively, and different isomers of the general composition [Cp₃UXY]^q (L = lanthanoid).     

An apparent high molecular weight form of boar proacrosin resulting from the presence of a protein that binds to proacrosin

Gel chromatography at pH 3.0 demonstrated that a partially purified extract of ejaculated boar spermatozoa apparently contained two proacrosins with approximate molecular weights of 88.000 and 55.000. Disc gel electrophoretic experiments indicated that the high molecular weight form was actually a complex between the low molecular weight form and a protein with a molecular weight of 29,000. The fact that this complex did not dissociate at pH 3.0 indicates the need for caution in interpretation of data obtained by acidic chromatography of proacrosin preparations.