Comprehensive report on the prevalence of root-knot nematodes in the Poonch division of Azad Jammu and Kashmir,Pakistan

The present study documents the root-knot nematodes (RKN) fauna of the Poonch division in Azad Jammu and Kashmir infecting vegetables. An overall prevalence of 40% of RKN was recorded. Of the four districts investigated, maximum prevalence was recorded in district Poonch with 59%, followed by Sudhnuti with 58%. The lowest prevalence of RKN was found in districts Bagh (29%) and Haveli (33%). Out of 15 vegetables investigated, RKN was found on five crops. The highest prevalence of 37.8% was recorded on okra, followed by 31.3% on cucumber and 17.5% on tomato. RKN was less prevalent on eggplant (8.3%) and beans (7.7%). Three RKN species, that is Meloidogyne incognita, Meloidogyne javanica and Meloidogyne arenaria, were found infecting the hosts. M. javanica was found to be the most prevalent followed by M. incognita and M. arenaria. This trend was found in all the districts. Overall prevalence of M. javanica as sole population was 9% and that of M. incognita was 2%. Meloidogyne arenaria was not found in any of the fields as sole population. The prevalence of M. incognita with M. javanica or M. arenaria as mixed populations was 8% and 5%, respectively, and that of M. javanica with M. arenaria was 4%. Similarly, all the three species prevailed as mixed populations in 12% of the fields in the division. The severity of RKN infections, measured as galling index, was found to be variable within each infected field (GI 2–9). Identification of RKN species was based on the morphology of perineal patterns and confirmed by molecular SCAR and CO1 makers based identification. In conclusion, RKN were distributed in the Poonch division and M. javanica was predominant. Cucumber, okra, tomato and eggplant were severely attacked by these nematodes warranting the adoption of stringent control strategies for their management.     

茄子果实相关农艺性状全基因组关联分析研究进展与展望

茄子是重要的园艺作物,也是茄科植物中种植最广泛的蔬菜之一。茄子果实相关农艺性状是一种复杂的数量性状,传统育种选育效率低、周期长。高通量测序技术与生物信息学技术的快速发展,使得全基因组关联分析(genome-wide association study, GWAS)在解析茄子果实相关复杂农艺性状的遗传规律方面展现出巨大的应用前景。本文对全基因组关联分析在茄子的果形、果色等果实相关农艺性状中的研究进展进行了综述;针对茄子数量性状遗传研究中普遍存在的“丢失遗传力”(missing heritability)问题,从4个GWAS策略在茄子果实相关农艺性状研究中的应用热点出发,提出了未来茄子GWAS的发展对策;并结合当前茄子遗传改良的实践需求,展望了GWAS策略在茄子分子育种领域的广阔应用前景。本文为今后利用GWAS解析各种茄子果实相关性状的遗传基础以及选育符合消费者需求的果实材料提供了理论依据和参考。     

Does mycorrhization influence herbivore-induced volatile emission in Medicago truncatula?

Symbiosis with mycorrhizal fungi substantially impacts secondary metabolism and defensive traits of colonised plants. In the present study, we investigated the influence of mycorrhization (Glomus intraradices) on inducible indirect defences against herbivores using the model legume Medicago truncatula. Volatile emission by mycorrhizal and non-mycorrhizal plants was measured in reaction to damage inflicted by Spodoptera spp. and compared to the basal levels of volatile emission by plants of two different cultivars. Emitted volatiles were recorded using closed-loop stripping and gas chromatography/mass spectrometry. The documented volatile patterns were evaluated using multidimensional scaling to visualise patterns and stepwise linear discriminant analysis to distinguish volatile blends of plants with distinct physiological status and genetic background. Volatile blends emitted by different cultivars of M. truncatula prove to be clearly distinct, whereas mycorrhization only slightly influenced herbivore-induced volatile emissions. Still, the observed differences were sufficient to create classification rules to distinguish mycorrhizal and non-mycorrhizal plants by the volatiles emitted. Moreover, the effect of mycorrhization turned out to be opposed in the two cultivars examined. Root symbionts thus seem to alter indirect inducible defences of M. truncatula against insect herbivores. The impact of this effect strongly depends on the genetic background of the plant and, hence, in part explains the highly contradictory results on tripartite interactions gathered to date.     

Genetic Diversity,Population Structure,and Resistance to Phytophthora capsici of a Worldwide Collection of Eggplant Germplasm

Eggplant (Solanum melongena L.) is an important solanaceous crop with high phenotypic diversity and moderate genotypic diversity. Ninety-nine genotypes of eggplant germplasm (species (S. melongena, S. incanum, S. linnaeanum and S. gilo), landraces and heirloom cultivars) from 32 countries and five continents were evaluated for genetic diversity, population structure, fruit shape, and disease resistance to Phytophthora fruit rot. Fruits from each line were measured for fruit shape and evaluated for resistance to two Phytophthora capsici isolates seven days post inoculation. Only one accession (PI 413784) was completely resistant to both isolates evaluated. Partial resistance to Phytophthora fruit rot was found in accessions from all four eggplant species evaluated in this study. Genetic diversity and population structure were assessed using 22 polymorphic simple sequence repeats (SSRs). The polymorphism information content (PIC) for the population was moderate (0.49) in the population. Genetic analyses using the program STRUCTURE indicated the existence of four genetic clusters within the eggplant collection. Population structure was detected when eggplant lines were grouped by species, continent of origin, country of origin, fruit shape and disease resistance.     

Evaluation of the effect of different concentrations of organic amendments and botanical extracts on the mortality and hatching of Meloidogyne javanica

Organic amendments and botanical extracts are considered as some of the eco-friendly alternatives to chemical pesticide in suppressing plant pathogenic nematodes (PPN). Root-knot nematode (RKN) is the most important group of PPN distributed globally causing both qualitative and quantitative damage to many crops. Vermicompost and biogas digestate (BD) are two forms of organic amendments reported to have potential to limit RKN infestation. Likewise, marigold (Tagates spp.) and cabbage (Brassica oleracea) are two widely studied botanicals having shown their potential to control RKN. However, there was not much in vitro research related to organic amendments and botanicals targeting a particular species of RKN to observe their nematicidal effect. An in vitro experiment was undertaken to evaluate the effect of these organic amendments and botanical extracts at different concentrations (10.0%, 25.0%, 50.0% and 100.0%) on the hatching and mortality of Meloidogyne javanica at different time spans. Mortality of J₂ and inhibition of hatching of egg mass of M. javanica differed significantly (p < 0.0001) among the interaction effect of treatments and incubation time for both organic amendments and botanical extracts. Findings of this experiment indicated that potentiality for increasing mortality and inhibition of hatching was higher and steadier in botanical extracts than those of organic amendments.     

Effects of Preconditioning Through Mycorrhizal Inoculation on the Control of Melon Root Rot and Vine Decline Caused by Monosporascus cannonballus

The use of inoculum of arbuscular mycorrhizal fungi (AMF) in nursery represents a promising field in horticulture because of its known benefits in terms of plant growth and bioprotection. The present work was undertaken to determine the effect of mycorrhizal inoculation with Rhizophagus irregularis in a nursery medium on the containment of melon root rot and vine decline (MRRVD) caused by the soil‐borne pathogen Monosporascus cannonballus. The percentage of mycorrhization, biomass and yield following mycorrhizal inoculation were also evaluated. Biocontrol activity was assessed in greenhouse pot experiments upon artificial inoculation of M. cannonballus and in a two‐season field experiment under production conditions in an unheated greenhouse with a history of MRRVD. On the basis of the mycorrhization parameters, the interaction appeared to be established within 30 days after inoculation. The total shoot growth in the mycorrhized plants was significantly higher when compared to the control, while the root growth was unaffected. Upon artificial inoculation of M. cannonballus, mycorrhization provided complete protection against the pathogen. Greenhouse experiments under production conditions during spring cropping season showed that pretransplanting inoculation with R. irregularis significantly decreased the severity of the disease. Also, the average fruit weight of mycorrhized plants was significantly higher than the untreated control. Nevertheless, in summer crop, the bioprotection activity of AMF failed. Present results indicate that the use of AMF in a nursery setting can contribute to the prevention of the onset of this problematic soil‐borne disease within a sustainable and integrated soil‐borne disease management.     

Mixing tree species associated with arbuscular or ectotrophic mycorrhizae reveals dual mycorrhization and interactive effects on the fungal partners

1. Recent studies found that the majority of shrub and tree species are associated with both arbuscular mycorrhizal (AM) and ectomycorrhizal (EM) fungi. However, our knowledge on how different mycorrhizal types interact with each other is still limited. We asked whether the combination of hosts with a preferred association with either AM or EM fungi increases the host tree roots’ mycorrhization rate and affects AM and EM fungal richness and community composition.
2. We established a tree diversity experiment, where five tree species of each of the two mycorrhiza types were planted in monocultures, two‐species and four‐species mixtures. We applied morphological assessment to estimate mycorrhization rates and next‐generation molecular sequencing to quantify mycobiont richness.
3. Both the morphological and molecular assessment revealed dual‐mycorrhizal colonization in 79% and 100% of the samples, respectively. OTU community composition strongly differed between AM and EM trees. While host tree species richness did not affect mycorrhization rates, we observed significant effects of mixing AM‐ and EM‐associated hosts in AM mycorrhization rate. Glomeromycota richness was larger in monotypic AM tree combinations than in AM‐EM mixtures, pointing to a dilution or suppression effect of AM by EM trees. We found a strong match between morphological quantification of AM mycorrhization rate and Glomeromycota richness.
4. Synthesis. We provide evidence that the combination of hosts differing in their preferred mycorrhiza association affects the host''s fungal community composition, thus revealing important biotic interactions among trees and their associated fungi.

     

Pseudotsuga menziesii invasion in native forests of Patagonia,Argentina: What about mycorrhizas?

Pseudotsuga menziesii is one of the most widely planted conifers in the Patagonian Andes of Argentina, with invading characteristics that are widely reported. Nevertheless, little is known about the role of its obligate mycorrhizal associations in limiting or fostering the establishment of invading seedlings. We studied the richness and abundance of endo- (AM) and ectomycorrhizae (EM) present in P. menziesii seedlings growing in six Nothofagus forests invaded by P. menziesii seedlings (Nothofagus + P. menziesii) matrices. One transect along the maximum effective recruitment distance (ERA) was established at each site in order to wrench seedlings and sample soils. P. menziesii showed effective associations with a wide range of mycorrhizal symbionts: AM (ranging between 13.21 and 37.11%), EM (ranging between 79.91 and 89.14%) and Dark Septate Endophytes (DSE). Seedlings' mycorrhization percentages were always high, suggesting a good nursery effect provided by neighboring plantations. Mycorrhizal abundance (AM% and EM%), EM morphotypes richness and evenness showed significant differences between sites, indicating that P. menziesii displays a high plasticity being capable to select the more convenient mycorrhizal arrangement at each invaded site.     

Interaction of Endomycorrhizal Fungi,Superphosphate, and Meloidogyne incognita on Cotton in Microplot and Field Studies

Microplot and field experiments were conducted to determine the effects of two vesicular-arbuscular mycorrhizal (VAM) fungi, Glomus intraradices (Gi) and Gigaspora margarita (Gm), and dicalcium phosphate (P) on Meloidogyne incognita (Mi) reproduction and seed cotton yield of the Mi-susceptible cotton cultivar, Stoneville 213. In 1983 population densities of Mi juveniles were significantly lower 60 and 90 days after planting in microplots receiving Gi. Mycorrhizal fungi reduced the severity of yield losses to Mi, whereas P fertilization increased yield losses to Mi. In 1984 microplot yields were reduced linearly as nematode inoculum densities increased in treatments of Mi alone, Gm, or P, but the response was curvilinear with Gi. Yield suppressions in the 1984 field experiment occurred only in plots infested with Mi alone. In the 1984 microplots, numbers of Mi juveniles penetrating seedling roots increased Iinearly with increasing nematode inoculum densities and was favored when mycorrhizal fungi or superphosphate were added. Juvenile penetration of roots was negatively correlated with yields in all treatments (r = -0.54 to -0.81) except Gm and with number of bolls in Mi alone (r = -0.85) and P (r = -0.81) treatments. Mycorrhizal fungi can increase host tolerance to M. incognita in field conditions and may function as important biological control agents in soils infested with high population densities of efficient VAM species.     

High effectiveness of exotic arbuscular mycorrhizal fungi is reflected in improved rhizobial symbiosis and trehalose turnover in Cajanus cajan genotypes grown under salinity stress

Arbuscular mycorrhizal fungi (AMF) improve functioning of legume-Rhizobium symbiosis under salinity. However, plant responses to mycorrhization vary depending on the plant and fungal species. The current study aimed to compare the effectiveness of a native inoculum from saline soil and two exotic isolates, Funneliformis mosseae and Rhizophagus irregularis on two Cajanus cajan (pigeonpea) genotypes (Paras, Pusa 2002) subjected to NaCl stress. Salinity depleted nodulation and nutrient status in both genotypes with higher negative effects in Paras. Although all AM fungi improved growth, R. irregularis performed better by promoting higher biomass accumulation, nodulation, N₂ fixation and N, P uptake which correlated with higher AM colonization. R. irregularis inoculated plants also accumulated higher trehalose in nodules due to decreased trehalase and increased trehalose-6-P synthase, trehalose-6-phosphatase activities. The results suggest that higher stability of R. irregularis-pigeonpea symbiosis under salt stress makes it an effective ameliorator for overcoming salt stress in pigeonpea.     

Application of nonspecific commercial AMF inocula results in poor mycorrhization in Camellia japonica L.

Camellia japonica L. (Theaceae, Theales) is an acidophilic evergreen flowering shrub and is traded worldwide. Symbiotic associations between the roots of this plant species and arbuscular mycorrhizal fungi (AMF), commonly recognized as natural biofertilizers and biocontrol agents, have been poorly studied so far. The aim of our study was to verify whether the application of nonspecific commercial AMF-based inocula could succeed and improve the growth of C. japonica. An experiment was conducted concerning the application of commercial inocula constituted by a specific AMF isolate (Funneliformis mosseae) or a consortium of different fungi and bacteria as alternatives to fertilization in pot cultivated C. japonica ‘Dr. Burnside’. Several growth parameters, plant nutrition and mycorrhization levels were monitored at the end of plant cultivation. Generally, increases in some macroelements (Ca, Mg, K) and microelements (Cu, Mn, Fe, Zn) were detected in the root system of inoculated camellias, while only Cu and Mn accumulation was increased in the leaves. Plants inoculated with the consortium inoculum exhibited increased chlorophyll content and foliage diameter while plants inoculated with F. mosseae exhibited increased number of flowers. Based on the polymorphism of an 18S rDNA region, we assessed the inoculated AMF that colonized C. japonica roots. The experiments showed that the applied AMF poorly colonized the root system of C. japonica. We suggest that commercial AMF formulations should be more targeted and host-specific in order to successfully colonize the host root and, potentially, fully express their benefits.     

Morphological and molecular analyses of Leafhopper,Amrasca biguttula (Ishida) (Hemiptera: Cicadellidae) infesting eggplant (Solanum melongena L.) in Luzon Island,Philippines

Eggplant (Solanum melongena L.) is the leading vegetable grown and consumed in the Philippines, and the eggplant leafhopper is one of its most important insect pests. Nine local populations of leafhopper infesting eggplants were collected from major eggplant growing areas in Luzon Island to determine if these populations are constituted singly or by different species and to assess the level of variability among them. Morphological analysis of the adult male abdominal and genital traits and partial mitochondrial COI gene sequence identified the eggplant leafhopper populations in Luzon Island as belonging to Amrasca (=Sundapteryx) biguttula (Ishida) (Hemiptera:Cicadelliae). Observed male specimens exhibited modifications in the pregenital abdominal tergites VII and VIII that were previously reported to not be found in other Amrasca species. Principal Component Analysis of four morphometric genital traits revealed high similarity among the leafhopper populations regardless of eggplant production areas. Partial COI sequence analysis idenfitied 11 sequence variants (haplotypes), with one predominant haplotype. Overall, the leafhopper populations from Luzon Island exhibited moderate haplotype diversity and low nucleotide diversity, indicating low genetic diversity. Topologies from a maximum likelihood tree indicate all eleven haplotypes cluster in a single clade with other A. biguttula infesting cotton and potato in India, but the Philippine population forms a separate subgroup although with weak bootstrap support. Further analysis with the Generalized Mixed Yule Coalescent (GMYC) method classified the different haplotypes into a single GMYC entity.     

Modulation of nutrient acquisition and polyamine pool in salt-stressed wheat (Triticum aestivum L.) plants inoculated with arbuscular mycorrhizal fungi

Two wheat (Triticum aestivum L.) cultivars, Sids 1 and Giza 168, were grown under non-saline or saline conditions (4.7 and 9.4 dS m^?1) with and without arbuscular mycorrhizal fungi (AMF) inoculation. Salt stress considerably decreased root colonization, plant productivity and N, P, K⁺, Fe, Zn and Cu concentrations, while it increased Na⁺ level, particularly in Giza 168. Mycorrhizal colonization significantly enhanced plant productivity and N, P, K⁺, Fe, Zn and Cu acquisition, while it diminished Na⁺ uptake, especially in Sids 1. Salinity increased putrescine level in Giza 168, however, values of spermidine and spermine increased in Sids 1 and decreased in Giza 168. Mycorrhization changed the polyamine balance under saline conditions, an increase in putrescine level associated with low contents of spermidine and spermine in Giza 168 was observed, while Sids 1 showed a decrease in putrescine and high increase in spermidine and spermine. Moreover, mycorrhizal inoculation significantly reduced the activities of diamine oxidase and polyamine oxidase in salt-stressed wheat plants. Modulation of nutrient acquisition and polyamine pool can be one of the mechanisms used by AMF to improve wheat adaptation to saline soils. This is the first report dealing with mycorrhization effect on diamine oxidase and polyamine oxidase activities under salt stress.     

Mitigation of saline conditions in watermelon with mycorrhiza and silicon application

Citrullus lanatus L. is critical vegetable for salinity stress. Arbuscular mycorrhizal fungi (AMF) and silicon treatments are known to help as bio-ameliorator of saline soils that can improve salinity tolerance in plants. But their combined effect has never been examined on watermelon therefore, present study investigated the effect of inoculation with the Arbuscular mycorrhizal fungi (AMF) along with silicon on the growth and yield parameters, antioxidant enzyme activities, pigment and mineral content of Citrullus lanatus L. plants grown during salt stress conditions. Outcomes from the study point out that salt stressed watermelon plants showed the best morphological and biochemical values when inoculated with Silicon (4 mM) + Glomus mosseae + Gigaspora gigantean. In addition, the plants inoculated by similar treatment demonstrated less osmotic activity, electrolyte leakage, as well as peroxide content. Treatments comprising Silicon (4 mM) with either Glomus mosseae and Gigaspora gigantean also performed significantly similar for most of the traits studied in the present investigation and better than the treatment only with either one of Glomus mosseae and Gigaspora gigantean. Antioxidant efficiency of melon was certainly appreciably enhanced after incubation with AMF and Si combination in salinity stress. Overall, the application of mycorrhiza and silicon can be considered to overcome the salinity stress in watermelon.     

Colonization patterns of mycorrhizal fungi associated with two rare orchids, <Emphasis Type="Italic">Cephalanthera</Emphasis> <Emphasis Type="Italic">falcata</Emphasis> and <Emphasis Type="Italic">C. erecta</Emphasis>

We investigated the spatial distribution and taxonomic identity of mycorrhizal fungi colonizing the root systems of two threatened Cephalanthera species, C. falcata and C. erecta, in naturally regenerated forests. Peloton formation was observed in both plant species, confirming the existence of orchid mycorrhizas. For C. falcata, mycorrhization was significantly different among individuals, ranging from 14 to 63%, and no significant difference among C. erecta individuals was detected (57–68%). Mycorrhization among three growth directions of roots and between orchid species was not significantly different. The spatial distribution of mycorrhizas in both orchids showed significant differences, being most frequent at an apical position. Based on DNA sequencing and phylogenetic analyses, we inferred that the families Thelephoraceae and Sebacinaceae were mycobionts for C. falcata and Thelephoraceae for C. erecta. Our findings indicated that mycorrhizal colonization occurs at a distal position from the base of these orchid root systems and that mycorrhizal fungi are restricted to few ectomycorrhizal fungal families.     

Applications of biotechnology in eggplant

Eggplant (Solanum melongena L.), an economically important vegetable crop in many countries in Asia and Africa, often has insufficient levels of resistance to biotic and abiotic stresses. Genetic resources of eggplant have been assessed for resistance against its most serious diseases and pests (bacterial and fungal wilts, nematodes and shoot and fruit borer). Attempts at crossing eggplant with its wild relatives resulted in limited success due to sexual incompatibilities. However, the ability of eggplant to respond well in tissue culture, notably plant regeneration, has allowed the application of biotechnology, particularly the exploitation of somaclonal variation, haploidisation, somatic hybridisation and genetic transformation for gene transfer. Somaclonal variation has been used to obtain lines with increased resistance to salt and little leaf disease. Traits of resistance against bacterial and fungal wilts have successfully been introduced into the cultivated eggplant through somatic hybridisation. However, most somatic hybrids were sterile when the parental lines were distantly related. In contrast, the use of close relatives as fusion partners or highly asymmetric fusion resulted in the production of fertile hybrids with resistance traits and a morphology close to the cultivated eggplant, thus avoiding the series of backcrosses necessary for introgression of desired traits into eggplant. As far as molecular markers and genetic engineering are concerned, the information available for eggplant is very scanty. Two genetic linkage maps have been established by using RAPD and RFLP markers. In order to analyse the genetic relationships between eggplant and its relatives, some studies based on AFLP and ctDNA analyses have also been conducted. So far only resistance against insects, and parthenocarpic fruit development have successfully been developed in eggplant using Agrobacterium tumefasciens transformation. However, some work on genetic engineering of eggplant for other biotic and abiotic stresses has recently been initiated. This revised version was published online in June 2006 with corrections to the Cover Date.     

Beneficial native bacteria improve survival and mycorrhization of desert truffle mycorrhizal plants in nursery conditions

Sixty-four native bacterial colonies were isolated from mycorrhizal roots of Helianthemum almeriense colonized by Terfezia claveryi, mycorrhizosphere soil, and peridium of T. claveryi to evaluate their effect on mycorrhizal plant production. Based on the phylogenetic analysis of the 16S rDNA partial sequence, 45 different strains from 17 genera were gathered. The largest genera were Pseudomonas (40.8 % of the isolated strains), Bacillus (12.2 % of isolated strains), and Varivorax (8.2 % of isolated strains). All the bacteria were characterized phenotypically and by their plant growth-promoting rhizobacteria (PGPR) traits (auxin and siderophore production, phosphate solubilization, and ACC deaminase activity). Only bacterial combinations with several PGPR traits or Pseudomonas sp. strain 5, which presents three different PGPR traits, had a positive effect on plant survival and growth. Particularly relevant were the bacterial treatments involving auxin release, which significantly increased the root-shoot ratio and mycorrhizal colonization. Moreover, Pseudomonas mandelii strain 29 was able to considerably increase mycorrhizal colonization but not plant growth, and could be considered as mycorrhiza-helper bacteria. Therefore, the mycorrhizal roots, mycorrhizosphere soil, and peridium of desert truffles are environments enriched in bacteria which may be used to increase the survival and mycorrhization in the desert truffle plant production system at a semi-industrial scale.