A Properly Configured Ring Structure Is Critical for the Function of the Mitochondrial DNA Recombination Protein,Mgm101

Mgm101 is a Rad52-type recombination protein of bacteriophage origin required for the repair and maintenance of mitochondrial DNA (mtDNA). It forms large oligomeric rings of ∼14-fold symmetry that catalyze the annealing of single-stranded DNAs in vitro. In this study, we investigated the structural elements that contribute to this distinctive higher order structural organization and examined its functional implications. A pair of vicinal cysteines, Cys-216 and Cys-217, was found to be essential for mtDNA maintenance. Mutations to the polar serine, the negatively charged aspartic and glutamic acids, and the hydrophobic amino acid alanine all destabilize mtDNA in vivo. The alanine mutants have an increased propensity of forming macroscopic filaments. In contrast, mutations to aspartic acid drastically destabilize the protein and result in unstructured aggregates with severely reduced DNA binding activity. Interestingly, the serine mutants partially disassemble the Mgm101 rings into smaller oligomers. In the case of the C216S mutant, a moderate increase in DNA binding activity was observed. By using small angle x-ray scattering analysis, we found that Mgm101 forms rings of ∼200 Å diameter in solution, consistent with the structure previously established by transmission electron microscopy. We also found that the C216A/C217A double mutant tends to form broken rings, which likely provide free ends for seeding the growth of the super-stable but functionally defective filaments. Taken together, our data underscore the importance of a delicately maintained ring structure critical for Mgm101 activity. We discuss a potential role of Cys-216 and Cys-217 in regulating Mgm101 function and the repair of damaged mtDNA under stress conditions.     

A new mitochondrial haplotype confirms the distinctiveness of the Italian wolf (Canis lupus) population

In the past century the Italian wolf has been repeatedly indicated as a distinct subspecies, Canis lupus italicus, due to its unique morphology and its distinctive mtDNA control region (CR) monomorphism. However, recent studies on wolf x dog hybridization in Italy documented the presence of a second mtDNA CR haplotype (W16), previously found only in wolves from Eastern Europe, casting doubts on the genetic uniqueness of the Italian wolves. To test whether this second haplotype belongs to the Italian wolf population, we genotyped 92 wolf DNA samples from Italy, Slovenia, Greece and Bulgaria at four mtDNA regions (control-region, ATP6, COIII and ND4 genes) and at 39 autosomal microsatellites. Results confirm the presence of two mtDNA multi-fragment haplotypes (WH14 and WH19) in the Italian wolves, distinct from all the other European wolves. Network analyses of the multi-fragment mtDNA haplotypes identified two strongly differentiated clades, with the Italian wolf WH14 and WH19 multi-fragment haplotypes rooted together. Finally, Bayesian clustering clearly assigned all the wolves sampled in Italy to the Italian population, regardless of the two different multi-fragment haplotypes. These results demonstrate that the W16 CR haplotype is part of the genetic pool of the Italian wolf population, reconfirming its distinctiveness from other European wolves. Overall, considering the presence of unique mtDNA and Y-linked haplotypes, the sharply different frequencies of genome-wide autosomal alleles and the distinct morphological features of Italian wolves, we believe that this population should be considered a distinct subspecies.     

The application of environmental ethics in biological conservation: a case study from the southernmost tip of the Americas

Biological conservation is not only about facts and technical measures concerning ecology, rather it must also consider values. This pertains to both the balancing of various human interests and also to the ethical evaluation of human actions towards nature. Here we discuss how environmental ethics can be incorporated into conservation decisions, and what implications the inclusion of ethical valuation has for the practice of conservation biology. While this is done mostly on a rather abstract level, we illustrate this here by applying ethical theory to a case study: the options for management of the introduced North American beaver (Castor canadensis) in the very south of Chile (Navarino Island). The beaver is an exotic species to the area and has substantially altered the ecological systems of the region. We discuss different options for dealing with the beaver (eradicate, control, tolerate, promote) from the viewpoint of anthropocentric environmental ethics and biocentric ethics. The results of our analysis demonstrate the value of ethical discussions in clarifying and underpinning arguments for and against specific actions. At the same time, they also show that ethical arguments do not decrease the need for sound scientific data but, on the contrary, may even increase this demand. We also highlight that the conclusions regarding adequate actions to be taken vary depending on the specific ethical theory embraced.

Origin of, and conservation units in, the Irish red squirrel (Sciurus vulgaris) population

Knowledge of genetic relationships among wildlife populations is fundamental to their conservation, particularly where translocations are concerned. This study involved a survey of mitochondrial DNA variation in the Irish red squirrel population. Our main aims were: (1) to determine whether the Irish red squirrel population is distinct from that found in Britain, given known translocations that took place from Britain in the 1800’s; and (2) whether inclusion of Irish data into a reanalysis of European red squirrel data could reveal patterns of postglacial spread in Ireland. We found evidence that the current Irish red squirrel population may be a mixture of native and translocated stock, and relationships between Irish and European haplotypes supported a number of colonisation events of the island. Although only one haplotype was common to both Ireland and Britain, it is probable that the most common haplotypes in Ireland are British introductions that have since become extinct in Britain. There was a significant regional genetic structure in Ireland (P < 0.001), as well as between all Irish and British regions. Although it is likely that the red squirrel will not be fundamental in tracing the colonisation of Ireland by mammals, the data demonstrated that individual regions within Ireland, as well as the Irish population as a whole, are distinct both from the British population and from each other and, therefore, these populations should be treated as separate Management Units (MU) in conservation strategies.     

染色体荧光原位杂交技术检测平衡易位的临床应用

染色体荧光原位杂交技术检测平衡易位的临床应用崔英霞商学军王咏梅（南京军区南京总医院全军医学检验中心,南京２１０００２）潘淑娟张锡然（南京师范大学生物系,南京２１００９７）ＣｌｉｎｉｃａｌＡｐｐｌｉｃａｔｉｏｎｏｆＦｌｕｏｒｅｓｃｅｎｃｅｉｎｓｉｔｕＨ...     

A review of the genus Dysalotus (Percomorphacea: Chiasmodontidae), with the description of Dysalotus pouliulii sp. nov.

A new species of Dysalotus (family Chiasmodontidae) known only from off the Hawaiian archipelago is described here as Dysalotus pouliulii sp. nov. It differs from all other species of Dysalotus in having a greater number of teeth on the premaxilla (151–198 v. 60–138) and dentary (136–199 v. 76–132) and in a shorter upper jaw [51·9–54·9% of head length (L_H) v. 62·4–74·4% L_H] and lower jaw (64·8–67·4% in L_H v. 75·3–88·1% in L_H). A key for the species of Dysalotus and an updated distribution map are provided. http://zoobank.org/urn:lsid:zoobank.org:pub:E9B5F1DC‐52E0‐4F53‐9109‐2A8E252AE8CE .     

金丝猴属的DNA序列变异及进化与保护遗传学研究

金丝猴的分类及系统发育存在许多争议。本文测定了２只川金丝猴、８只滇金丝猴、１只越南金丝猴和１只灰叶猴的２５３ｂｐ的线粒体细胞色素ｂ基因的序列。其中４７个位点（１９％）检出变异。我们采用简约法、最大似然法和距离法构建了一系列的分子系统树,得到相同的拓扑结构,从而可能在分子水平澄清了金丝猴属的系统发育。结果表明,云南金丝猴与越南金丝猴间的关系较与川金丝猴的为近。金丝猴属的分化大约发生在２～６百万年以前。这３种金丝猴均是独立的种,且都应归入金丝猴属。对８只来自野外的滇金丝猴（其中包括了昆明动物研究所圈养群体的所有６只创立者）的非损伤性遗传分析提示,编号为ＹＫ２的母猴是维持该圈养群体遗传多样性的关键猴。我们建立的这种非损伤性遗传分析方法广泛适用于珍稀濒危动物的遗传多样性及遗传管理研究。     

Variation of plastid and mitochondrial DNAs in the genus Hedysarum

Summary Plastid and mitochondrial DNAs from Hedysarum species of the western Mediterranean basin, H. spinosissimum ssp eu-spinosissimum, H. spinosissimum ssp capitatum, H. carnosum, H. coronarium and H. flexuosum, were compared by restriction endonuclease fragment analysis. ctDNA fragment patterns for ssp eu-spinosissimum and ssp capitatum were indistinguishable in different enzyme digests. An identical ctDNA variation was found in Hpa II digests with two Sardinian populations of ssp capitatum. Each of the two subspecies was characterized by specific mt DNA patterns with Pst I, Bam HI, Sma I and EcoRI. No variation was detected in populations of different geographical origins for a given subspecies. H. carnosum, H. coronarium and H. flexuosum generated specific ct and mt DNA patterns. Comparison of mitochondrial fragments indicated: — a strong homology between the two subspecies, — a closer homology among the three other diploids, each being closer to the other two than to H. spinosissimum subspecies — as was also the case for the plastid genomes.     

微卫星多态性检测技术及其在保护遗传学中的应用

微卫星是一种新型的分子遗传标记,具有只需极少量样品即可进行PCR扩增等优点,使之极其适合于保护遗传化学研究。阐释了微卫星的结构、微卫星多态检测技术的原理,简要论述了微卫生多态检测技术的优点及其应用,并介绍了一种分离动物微卫星位点的富集方法。     

Natives adapting to invasive species: ecology,genes, and the sustainability of conservation

Contemporary anthropogenic evolution is common. Biological invasions are an especially dynamic form of novel selection. This paper considers how native species evolve in response to biological invasions and the potential consequences of such evolution. Among numerous recent cases, the most widely reported instances are of phytophagous insects shifting onto introduced host plants. For example, our studies show that in North America and Australia, soapberry bugs evolved substantially after colonizing introduced hosts. Such cases permit close estimation of evolution’s direction and rate, and we have used cross-rearing studies of derived and ancestral-type populations to measure changes in reaction norms and performance tradeoffs. Different fitness traits have followed very different paths in evolving to their current phenotypic values. Our hybridization studies show that the genetic architecture of these adaptations involves a surprising degree of non-additive variation (epistasis, dominance). The importance of non-additive genetic variation in rapid evolution will be clarified as more studies take advantage of similar situations. As appreciation grows for the deep contemporary interplay of evolution and ecology, debate about qualitative terms describing evolution’s rate will become less relevant. From a conservation standpoint, contemporary evolution in native species presents challenges for ecologically appropriate and sustainable management. Evolving natives and invaders may reconfigure contemporary and future communities. Adaptive evolution may also enhance native communities’ capacity to control invasive populations.     

Genetic population structure of <Emphasis Type="Italic">Lefua echigonia</Emphasis> inferred from allozymic and mitochondrial cytochrome <Emphasis Type="Italic">b</Emphasis> variations

We examined the genetic population structure of Lefua echigonia (Japanese name, hotoke-dojo) using polymerase chain reaction restriction-fragment length polymorphisms (PCR-RFLPs) of the mitochondrial cytochrome b gene and two allozymic loci. The phylogenetic relationships of L. echigonia and those among L. echigonia, Lefua sp. (nagare hotoke-dojo), and L. nikkonis (ezo hotoke-dojo) were also investigated based on the nucleotide sequences of the cytochrome b gene. PCR-RFLP analysis revealed 18 mitotypes in L. echigonia, 2 in Lefua sp., and 1 in L. nikkonis. Phylogenetic trees based on the cytochrome b sequences indicated that the 18 mitotypes in L. echigonia were divided into five distinct groups (South-Kanto, North-Kanto, Tohoku, Echigo, and Tokai-Kinki clades) that differed by 8.5–15.3%, reflecting region-specific geographic distributions. The distributions of alleles in two allozymic loci roughly corresponded to those of the mitotype groups. The divergence times of the five groups were estimated to be about 3.4–7.7 million years ago by applying a general rate for mitochondrial DNA, suggesting that the divergence among them might have occurred in the late Tertiary. It can be inferred that the regional differentiation of each group was mainly due to geographic isolation and that this has been maintained, because the boundaries among the groups corresponded to geological features. The trees also supported the existence of three taxa, L. echigonia, Lefua sp., and L. nikkonis. We concluded that Lefua sp. was distinguished from other species in Lefua by morphological and ecological characters and also by genetic divergences of the cytochrome b gene. Our study also demonstrated the superior efficacy and simplicity of PCR-RFLP analysis as a method for detecting genetic variation in L. echigonia.     

A review: the history of conservation programs and development of the national parks concept in Turkey

This paper summarizes the historical development of nature conservation programs, and discusses the past and current case of national parks in Turkey. The study evaluates biodiversity inventory data, international and national importance of biodiversity, environmental problems threatening natural resources, historical developments in nature conservation, institutional development for conservation programs, participation of Turkey in international agreements, and national conferences and meetings to advocate nature conservation. Finally, the developments and current conditions of conservation programs and national parks are also discussed.     

Predicaments of endangered huemul deer, Hippocamelus bisulcus, in Argentina: a review

A total of 350–600 huemul (Hippocamelus bisulcus) remain as fragmented groups along 1,850 km of Argentine Andes. Their conservation depends on accurate knowledge of the species' requirements and the factors preventing their recovery. The Regional Delegation for Patagonian National Parks (RDP) erroneously alleged that huemul status is satisfactory, and current in situ efforts are sufficient to guarantee recovery. Therefore, conservation centers are regarded unnecessary and the associated risks too high, especially because previous attempts with manipulations have failed. No data support these claims, instead many subpopulations have disappeared recently even in national parks (NP) which hold <0.01 huemul/km². Causes preventing recovery or recolonization are unknown. Current pressures on huemul subpopulations include increased economic activities and alien species. Normal ranges for many biological parameters or population performance of huemul are unknown. Focus is on habitat studies using presence as surrogate for what should be studied on survival and reproduction. Factors important to small-sized populations or preventing recovery remain unstudied. RDPs insistence on indirect methodology prevents implementation of other potentially more promising research approaches. The lack of consensus regarding the necessity and feasibility of a conservation center prevented its establishment and related census flights in unprotected sites. RDP currently forecloses aerial census and capturing and thus prospects for a huemul conservation center, and the proposition of establishing such a center was neither discussed nor incorporated into the national recovery plan. Helicopter captures have been used successfully on deer in huemul habitat. Captures and translocation of huemul occurred since 1830; several zoos kept them successfully up to 10 years, and natural tameness facilitated husbandry. Recently, Chile successfully caught and transported huemul by helicopter to stock a private center. Unknowns can be addressed easily on semicaptive deer; other questions can be studied through reintroductions, employing adaptive management. RDP places faith in NP providing viable subpopulations. However, it remains doubtful whether some 220 huemul living in >22,000 km² of parks can guarantee species survival. For Argentine cervids, absence of studies and management plans due to lack of funds is typical. Considering the actual situation and future perspectives, it appears doubtful that recovery will be achieved based on strategies similar to those employed in the past.     

嵊泗海岛不同底质潮间带春秋季大型底栖动物的群落格局

于2006年9月(秋季)和2007年4月(春季)对嵊泗海岛的不同底质潮间带断面设立的8个取样站采集的调查资料,采用ABC曲线方法和大型多元统计分析软件PRIMER5对嵊泗海岛大型底栖动物进行Bray-Curtis相似性聚类分析和非度量MDS标序,研究群落结构格局以及用物种多样性指数、物种均匀度和物种丰富度指数分析潮间带大型底栖动物物种多样性和群落种类组成,并对大型底栖动物的群落结构进行了初步研究。调查获得嵊泗海岛的不同底质潮间带大型底栖动物130种,其中多毛类31种,软体动物57种,节肢动物32种,棘皮动物4种,其它类6种。春、秋季嵊泗潮间带大型底栖动物多样性指数(H′)(F1,13=0.10,P=0.75)、物种丰富度(D)(F1,13=0.66,P=0.43)和均匀度指数(J)(F1,13=0.33,P=0.58)均无显著差异;不同底质嵊泗潮间带大型底栖动物多样性指数(H′)(F1,13=14.28,P<0.01)、物种丰富度(D)(F1,13=14.07,P<0.01)存在显著差异,而均匀度指数(J)(F1,13=1.62,P=0.23)无显著差异。群落结构聚类分析和MDS标序表明,8个取样站的群落可分为3组(Ⅰ、Ⅱ和Ⅲ组)。根据所调查嵊泗海岛潮间带的丰度和生物量资料做的ABC曲线分析表明,底栖动物群落受到了中等程度的污染或者扰动。     

Forensic DNA analysis for animal protection and biodiversity conservation: A review

The use of DNA analysis in forensic investigations into animal persecution and biodiversity conservation is now commonplace and crimes such as illegal collection/smuggling, poaching, and illegal trade of protected species are increasingly being investigated using DNA based evidence in many countries. Using DNA analysis, it is possible to identify the species and geographical origin (i.e. population) of a forensic sample, and to also individualise the sample with high levels of probability. Despite extensive literature in animal species, there is unfortunately a serious lack of information on plant species, with only a handful of recent studies. In this review, I detail the applications and diverse forensic investigations that have been carried out to date whilst also highlighting recent developmental studies which offer forensic potential for many species in the future.     

Uncoupling the roles of the SUV3 helicase in maintenance of mitochondrial genome stability and RNA degradation

Yeast SUV3 is a nuclear encoded mitochondrial RNA helicase that complexes with an exoribonuclease, DSS1, to function as an RNA degradosome. Inactivation of SUV3 leads to mitochondrial dysfunctions, such as respiratory deficiency; accumulation of aberrant RNA species, including excised group I introns; and loss of mitochondrial DNA (mtDNA). Although intron toxicity has long been speculated to be the major reason for the observed phenotypes, direct evidence to support or refute this theory is lacking. Moreover, it remains unknown whether SUV3 plays a direct role in mtDNA maintenance independently of its degradosome activity. In this paper, we address these questions by employing an inducible knockdown system in Saccharomyces cerevisiae with either normal or intronless mtDNA background. Expressing mutants defective in ATPase (K245A) or RNA binding activities (V272L or ΔCC, which carries an 8-amino acid deletion at the C-terminal conserved region) resulted in not only respiratory deficiencies but also loss of mtDNA under normal mtDNA background. Surprisingly, V272L, but not other mutants, can rescue the said deficiencies under intronless background. These results provide genetic evidence supporting the notion that the functional requirements of SUV3 for degradosome activity and maintenance of mtDNA stability are separable. Furthermore, V272L mutants and wild-type SUV3 associated with an active mtDNA replication origin and facilitated mtDNA replication, whereas K245A and ΔCC failed to support mtDNA replication. These results indicate a direct role of SUV3 in maintaining mitochondrial genome stability that is independent of intron turnover but requires the intact ATPase activity and the CC conserved region.     

我国濒危哺乳动物保护生物学研究进展

本文简要论述了2010-1015年间,我国濒危哺乳动物（主要是食肉类、灵长类、有蹄类和鲸类) 保护生物学的研究进展,涉及进化保护生物学、保护生态学、保护行为学、保护生理学、保护遗传学、保护基因组学与宏基因组学和保护政策建议与实践等诸多领域。以大熊猫和金丝猴为代表的濒危动物保护生物学研究成绩显著。各项研究结果表明,大熊猫并非是一个已走到“进化尽头”的物种,仍具进化潜力。虽然大熊猫仍然面临栖息地破碎等环境问题,总的来看其种群数量在逐渐增长,栖息地面积在逐渐扩大,已走出困境并脱离“濒危”的状态,可降为“易危”。我国大熊猫的保护为世界生物多样性保护树立了成功的范例。根据国内研究进展和国际发展动态,该文还对未来保护生物学的研究提出了一些建议,包括加强长期定点监测与系统性的研究工作,加强新理论、新方法和新技术的研发及应用,加强宏微观研究手段的结合从机制上揭示科学问题,加强动物对食物、高原极端环境和水生生态环境的适应性进化分子机制的揭示,加强理论与实践相结合积极推动研究成果的应用,为濒危动物的有效保护保驾护航。     

A review of progress towards the conservation of the Killarney Fern (Trichomanes speciosum Willd.) in the British Isles

Summary

The Killarney Fern (Trichomanes speciosum) was considered amongst the rarest and most vulnerable of Europe's plants. Research which fed into the Biodiversity Action Plan and developed alongside it, has forced us to reconsider the level of threat to this species. A hitherto overlooked stage of the life-cycle, the gametophyte, has been shown to be comparatively abundant, genetically diverse, largely threat-free and with the potential over time to regenerate the familiar sporophyte stage. This research also promoted wider public interest which itself generated additional records, such that even the sporophyte is now known at more British sites than at any time previously and the species is accordingly considered ‘recovered’. However, continued legal protection and the need for further research are still recommended.