家蚕第12连锁群EST-SSR标记的筛选和分析

为了探究家蚕Bombyx mori EST-SSR标记的多态性, 对检索获得的家蚕第12连锁群的4 465条EST序列进行了分析, 整理和拼接后得到581条非冗余EST序列, 总长度约为480 kb。其中, 有122条序列中共检测到154个EST-SSR, 占所研究的EST序列的2.73%, 平均每3.12 kb 含有一个EST-SSR。在所检测的EST-SSR中, 三核苷酸和四核苷酸重复是主导类型, 分别占总数的36.36%和28.57%,大部分表现为Perfect形式; 核苷酸重复平均长度约为16.2 bp, 最长为30 bp。进一步进行同源性分析, 发现有26条序列可以在NCBI中检索到同源序列, 在这些序列中一共含有40个SSR, 其中14个(35.0%)位于5′-UTR, 11个(27.5%)位于3′-UTR, 15个(37.5%)位于CDS区。根据筛选到的微卫星序列设计11对引物, 其中8对引物有扩增产物, 且条带清晰; 应用引物ES1204对8个家蚕品种进行PCR扩增都呈现多态性。结果说明通过家蚕EST数据库发掘SSR标记是一条可行的途径。     

A histochemical study of the posterior silk glands of Bombyx mori during metamorphosis from larvae to pupae using frozen sections

The fine structures of the whole bodies and the posterior silk glands of Bombyx mori during metamorphosis from larvae to pupae in the cocoon were preserved virtually without damage when frozen sections were prepared using an adhesive plastic film. We used frozen sections for histochemical and enzyme histochemistry to characterize the metamorphosis of the posterior silk glands. Frozen sections were stained with DAPI to observe nuclear changes, examined using the TUNEL method to detect DNA fragments, and investigated using in situ hybridization to detect B. mori caspase expression. Both DNA fragments and expression of B. mori caspase increased with progressing metamorphosis. The degeneration of the posterior silk gland during metamorphosis appears to be an apoptotic event.     

家蚕LTR逆转录转座子的鉴定、分类及系统发育分析

转座子是真核生物基因组的重要组成成分。为了研究家蚕Bombyx mori长末端重复序列 (long terminal repeat, LTR)逆转录转座子的分类及进化, 本研究采用de novo预测和同源性搜索相结合的方法, 在家蚕基因组中共鉴定出了38个LTR逆转录转座子家族, 序列长度占整个基因组的0.64%, 远小于先前预测的11.8%, 其中有6个家族为本研究的新发现。38个家族中, 26个家族有表达序列标签 (expression sequence tag, EST)证据, 表明这些家族具有潜在的活性。对有EST证据的6个家族和没有EST证据的5个家族用RT-PCR进行了组织表达谱实验, 结果表明这11个家族在一些组织中有表达, 这进一步证实了这些家族具有转录活性, 基于此我们推测家蚕中大部分的LTR逆转录转座子家族很可能具有潜在活性。对转座子的插入时间进行估计, 结果表明绝大部分元件都是最近1百万年内插入到家蚕基因组中的。我们还比较了黑腹果蝇Drosophila melanogaster、 冈比亚按蚊Anopheles gambiae和家蚕B. mori中Ty3/Gypsy超家族分支的差异, 结果表明不同枝在不同昆虫中有着不同的扩张。家蚕中LTR逆转录转座子的鉴定和系统分析有助于我们理解逆转录转座子在昆虫进化中的作用。     

丝蛋白合成和分泌期家蚕丝腺中有氧氧化特性分析

【目的】有氧氧化中葡萄糖(Glc)、丙酮酸(PA)、乙酰Co A(AC)、还原型吡啶核苷酸(NADH)和腺苷三磷酸(ATP)摩尔数的理论比值为1∶2∶2∶10∶30~32,而己糖激酶(HK)、磷酸果糖激酶1(PFK1)、丙酮酸激酶(PK)、丙酮酸脱氢酶(PDH)、柠檬酸合酶(CS)、异柠檬酸脱氢酶(ICDHm)、α-酮戊二酸脱氢酶(α-KGDH)、NADH泛醌还原酶(NCR)、琥珀酸泛醌还原酶(SCR)、泛醌细胞色素C还原酶(CCR)、细胞色素C氧化酶(CCO)和ATP合酶(AS)活性的理论比值为1∶1∶2∶2∶2∶2∶2∶10∶2∶12∶12∶26~28。本研究旨在分析丝蛋白合成和分泌期家蚕Bombyx mori丝腺有氧氧化的特性。【方法】利用分光光度法和高效液相色谱法测定了上述生化指标的变化。【结果】丝蛋白合成和分泌期家蚕丝腺中检测不到Glc,产物含量以1/30 ATP,1/10 NADH,1/2 AC和1/2 PA的顺序递增;糖酵解途径相关酶活性,以PFK1活性最低;三羧酸循环相关酶活性以1/2 ICDHm,1/2α-KGDH和1/2 CS的顺序递增;氧化磷酸化相关酶包括1/26 AS,1/10 NCR,1/2 SCR,1/12 CCR和1/12 CCO的活性以1/26 AS活性最低;1/26 AS,1/2 ICDHm,1/2 PDH和PFK1的活性依次递增。NADH含量、ATP含量、PFK1活性、PDH活性和NCR活性在丝蛋白合成期升高,但在丝蛋白分泌期下降。【结论】据此推测,家蚕丝腺中PFK1,ICDHm和AS分别是糖酵解途径、三羧酸循环和氧化磷酸化的限速酶;糖酵解途径、丙酮酸脱氢、三羧酸循环和氧化磷酸化速率依次递减;有氧氧化速率在丝蛋白合成期升高,相反在丝蛋白分泌期降低。     

GC/MS-based metabolomic studies reveal key roles of glycine in regulating silk synthesis in silkworm,Bombyx mori

Metabolic profiling of silkworm, especially the factors that affect silk synthesis at the metabolic level, is little known. Herein, metabolomic method based on gas chromatography-mass spectrometry was applied to identify key metabolic changes in silk synthesis deficient silkworms. Forty-six differential metabolites were identified in Nd group with the defect of silk synthesis. Significant changes in the levels of glycine and uric acid (up-regulation), carbohydrates and free fatty acids (down-regulation) were observed. The further metabolomics of silk synthesis deficient silkworms by decreasing silk proteins synthesis using knocking out fibroin heavy chain gene or extirpating silk glands operation showed that the changes of the metabolites were almost consistent with those of the Nd group. Furthermore, the increased silk yields by supplying more glycine or its related metabolite confirmed that glycine is a key metabolite to regulate silk synthesis. These findings provide important insights into the regulation between metabolic profiling and silk synthesis.     

家蚕ABP与ABPX基因定位与表达分析

气味结合蛋白（odorant binding proteins, OBPs）在昆虫与外界环境化学信息交流过程中起着重要作用, 对昆虫的觅食、 求偶、 繁殖具有重要意义。触角结合蛋白（antennal binding protein, ABP）是OBP家族中的重要成员之一。为进一步探明家蚕Bombyx mori ABP与ABPX基因的结构、 表达及功能, 本研究利用染色体定位、 基因分析及半定量表达分析方法对其进行了研究。染色体定位分析表明, BmABP和BmABPX分别位于家蚕第5和第26染色体上, 基因结构差异较大, 可能功能上有较大差异。对家蚕胚胎、 幼虫和成虫不同发育阶段的雌、 雄虫多种组织进行基因表达谱分析发现, BmABP在家蚕发育的各个虫态、 多种组织器官中都有较高表达, 无时间特异性和组织特异性; BmABPX在不同发育时期和不同组织间差异显著（P<0.05）, 相对表达量以触角中最高, 其他非嗅觉组织中也多有表达, 性别间差异不大。结果提示, BmABP和BmABPX除了具有嗅觉相关功能外, 很可能还具有其他未知的生理功能。     

Stage-dependent effects of starvation on the growth, metamorphosis, and ecdysteroidogenesis by the prothoracic glands during the last larval instar of the silkworm, Bombyx mori

The stage-dependent effects of starvation on the growth, metamorphosis, and ecdysteroidogenesis of the prothoracic glands during the last larval instar of the silkworm, Bombyx mori, were studied in the present study. When last instar larvae were starved beginning on day 1 of that instar, all larvae died between days 5 and 7 of the instar. Although the prothoracicotropic hormone (PTTH) release from the brain-corpus cardiacum-corpus allatum (BR-CC-CA) did not significantly change during starvation, a deficiency in PTTH signal transduction was maintained, which led to very low levels of hemolymph ecdysteroids after the beginning of starvation. However, when starvation began on day 3 of the last larval instar, the major hemolymph ecdysteroid peak, preceding larval-pupal transformation, occurred 1 day earlier than that in control larvae. Protein content of the prothoracic glands in day 3-starved larvae was maintained at a low level as compared to that of control larvae. The secretory activity of the prothoracic glands in day 3-starved larvae was maintained at a level similar to that of control larvae. However, the rate of ecdysteroidogenesis, expressed per microgram of glandular protein, was greatly enhanced in these starved larvae, indicating that upon starvation, larvae increased the ecdysteroid production rate to enhance the rate of survival.     

家蚕两种新的类鹑斑突变体的遗传分析和SSR标记定位

在家蚕品种选育过程中发现了两种斑纹突变体, 与普通斑相比, 其幼虫眼状纹不明显, 而半月纹和星状纹正常, 其间有点和线构成鹑状斑纹, 第6、7腹节背面布有纵向波纹状斑纹, 整体斑纹与鹑斑(quail,q)极其相似, 暂且命名为类鹑斑(quail-like, q-l)。其中一种突变体稚蚕期体色呈褐色, 蚕体发育正常, 蚕茧大小一致, 茧型正常, 称为褐色类鹑斑(brown quail-like, q-lb); 另一种突变体幼虫体色为浅粉紫色, 幼虫食桑量少, 发育缓慢, 体质较弱, 体型较小, 茧型偏小, 称为紫色类鹑斑(purple quail-like, q-lp)。遗传分析表明, 两个类鹑斑基因均为隐性基因; 褐色类鹑斑(q-lb)与紫色类鹑斑(q-lp) 为等位基因, 紫色类鹑斑(q-lp)对褐色类鹑斑(q-lb)为隐性。经与形态标记P3(2)、p(2)、Ze(3)、L(4)、re(5)、E(6)、q(7)、I-a(9)、ms(12)、ch(13)、oa(14)、cts(16)、mln(18)、 msn(19)、rb(21)、so(26)测验和SSR分子标记多态性分析, 新发现的两种类鹑斑不同于鹑斑(q), 其基因座位于第8连锁群。     

家蚕蛹和成虫期GOBP/PBP亚家族基因簇基因定位与表达分析

昆虫的气味结合蛋白（odorant binding proteins, OBPs）在昆虫与外界环境化学信息交流过程中起着重要作用, 对昆虫觅食、求偶、繁殖具有重要意义。普通气味结合蛋白/性信息素结合蛋白（general odorant binding protein/ pheromone binding protein, GOBP/PBP）是鳞翅目昆虫OBP家族的一个重要单系群。为进一步明确家蚕Bombyx mori GOBP/PBP基因的结构、表达及功能, 本研究利用染色体定位及半定量表达分析方法对其进行了分析。染色体定位分析显示, 这些基因以基因簇的形式存在于第19染色体的nscaf3052上, 基因结构相似, 转录方向一致, 表明这些基因可能由同源基因复制产生, 并具有类似功能。对家蚕蛹和成虫不同发育阶段的雌、雄虫多种组织中进行表达分析发现, 这些基因的表达在不同发育时期和不同组织间差异明显（P<0.05）, 相对表达量均以触角中为最高, 其他非嗅觉组织中也多有表达, 性别间差异不大, 说明了该基因簇基因除了具有嗅觉相关的功能外, 很可能具有其他尚未被发现的功能。     

Vibrational 13C-cross-polarization/magic angle spinning NMR spectroscopic and thermal characterization of poly(alanine-glycine) as model for silk I Bombyx mori fibroin

This study focuses on the conformational characterization of poly(alanine-glycine) II (pAG II) as a model for a Bombyx mori fibroin silk I structure. Raman, IR, and 13C-cross-polarization/magic angle spinning NMR spectra of pAG II are discussed in comparison with those of the crystalline fraction of B. mori silk fibroin (chymotryptic precipitate, Cp) with a silk I (silk I-Cp) structure. The spectral data give evidence that silk I-Cp and the synthetic copolypeptide pAG II have similar conformations. Moreover, the spectral findings reveal that silk I-Cp is more crystalline than pAG II; consequently, the latter contains a larger amount of the random coil conformation. Differential scanning calorimetry measurements confirm this result. N-Deuteration experiments on pAG II allow us to attribute the Raman component at 1320 cm(-1) to the amide III mode of a beta-turn type II conformation, thus confirming the results of those who propose a repeated beta-turn type II structure for silk I. The analysis of the Raman spectra in the nuNH region confirms that the silk I structure is characterized by the presence of different types of H-bonding arrangements, in agreement with the above model.     

LIM-homeodomain transcription factor Awh is a key component activating all three fibroin genes,fibH, fibL and fhx,in the silk gland of the silkworm,Bombyx mori

In the silkworm Bombyx mori, three fibroin genes, fibroin-heavy-chain (fibH), fibroin-light-chain (fibL) and fibrohexamerin (fhx), are coexpressed only in the posterior silk gland (PSG) cells, while the sericin genes encoding silk glue proteins are expressed in the middle silk gland (MSG) cells. Silk gland factor-2 (SGF-2) is a PSG-specific activator complex of fibH, composed of a LIM-homeodomain protein, Awh, and its cofactors, Ldb and Lcaf. We investigated whether SGF-2 can activate other fibroin genes using transgenic silkworms. The genes for Ldb and Lcaf were expressed ubiquitously in various tissues, while the gene for Awh was expressed strictly specific in PSG of the wild type silkworms. Misexpression of Awh in transgenic silkworms induced ectopic expression of fibL and fhx as well as fibH in MSG. Coincidently with the induction of fibL and fhx by Awh, binding of SGF-2 to the promoter of fibL and fhx was detected in vitro, and SGF-2 binds directly to the fhx core promoter. Ectopic expression of the fibroin genes was observed at high levels in the middle part of MSG. Moreover, fibL and fhx were induced in the anterior silk gland (ASG) of the transgenic silkworms, but fibH was not. These results indicate that Awh is a key activator of all three fibroin genes, and the activity is probably regulated in conjunction with additional factors.     

Interactions between TIME and PIN could play a role in the system that controls the duration of diapause development and synchronization with seasonal cycles in the silkworm Bombyx mori*

The significance of winter cold in the termination of diapause was investigated with regards to TIME and PIN in eggs of the silkworm Bombyx mori. TIME (time interval measuring enzyme) is an ATPase that can measure time intervals by exhibiting a transitory burst of activation of the enzyme in accordance with diapause development, which requires cold for resumption of embryonic development in the silkworm. The possible timer function of TIME comprises a built‐in mechanism in the protein structure. TIME is a metallo‐glycoprotein consisting of 156 amino acid residues with a unique sequence in the N‐terminal region to which a sugar chain is attached. PIN (peptidyl inhibitory needle) inhibits the ATPase activity of TIME. PIN is not a simple enzyme inhibitor, but holds the timer by forming a time‐regulatory complex with TIME. The carbohydrate moiety of TIME is essential for the assembly of a high‐affinity PIN‐binding site within the timer motif of the TIME structure. The binding interaction between TIME and PIN was much tighter (nearly 1000 times) at 25°C than that at 4°C, as measured by fluorescence polarization. Because the logEC₅₀ at 4°C was approximately 7 nmol/L, PIN must dissociate from TIME at the physiological concentration of TIME in eggs in the winter cold. Based on the results of our study, we propose that the dissociation of the TIME–PIN complex in the winter cold cues a series of conformational changes of TIME, ultimately reaching the active form of ATPase which in turn causes the completion of diapause development and initiates new developmental programs.