Species interaction and response to wind speed alter the impact of projected temperature change in a montane ecosystem

Question: How does an improved understanding of species interactions, combined with an additional ecological variable (wind speed), alter the projected vegetation response to variation in altitudinal temperature? Location: Cairngorm Mountains, Scotland. Methods: Montane heathland vegetation was sampled from 144 plots (432 quadrats) comprising eight altitudinal transects. Ordination by partial DCA and path analysis was used to confirm: (1) the effect of wind speed and altitude (≈ temperature) on vegetation structure, i.e. canopy height and cover of bare ground, and (2) the control of arctic/alpine macrolichen occurrence by vegetation structure. Nested regression analysis was used to project the response of vegetation structure and lichen occurrence to temperature change scenarios with and without a step‐wise change in future wind speed. Results: Warming trends shifted vegetation zones upwards, with a subsequent loss of suitable habitat for arctic/alpine lichens. However, incorporating wind speed as an additional explanatory variable had an important modifying effect on the vegetation response to temperature: decreasing wind speed exaggerates the effects of increased temperature and vice versa. Our models suggest that for the wind‐driven heath examined, a 20% increase in mean wind speed may negate the effect of increased temperature on vegetation structure, resulting in no net change in lichen occurrence. Conclusions: We caution that an improved understanding of species interactions in vegetation response models may force the consideration of locally variable environmental parameters (e.g. wind speed), bringing into question the predicted vegetation response based on standard projections of temperature change along altitudinal gradients.     

A burrowing ecosystem engineer positively affects its microbial prey under stressful conditions

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Polymerization of MIP-1 chemokine (CCL3 and CCL4) and clearance of MIP-1 by insulin-degrading enzyme

Macrophage inflammatory protein-1 (MIP-1), MIP-1α (CCL3) and MIP-1β (CCL4) are chemokines crucial for immune responses towards infection and inflammation. Both MIP-1α and MIP-1β form high-molecular-weight aggregates. Our crystal structures reveal that MIP-1 aggregation is a polymerization process and human MIP-1α and MIP-1β form rod-shaped, double-helical polymers. Biophysical analyses and mathematical modelling show that MIP-1 reversibly forms a polydisperse distribution of rod-shaped polymers in solution. Polymerization buries receptor-binding sites of MIP-1α, thus depolymerization mutations enhance MIP-1α to arrest monocytes onto activated human endothelium. However, same depolymerization mutations render MIP-1α ineffective in mouse peritoneal cell recruitment. Mathematical modelling reveals that, for a long-range chemotaxis of MIP-1, polymerization could protect MIP-1 from proteases that selectively degrade monomeric MIP-1. Insulin-degrading enzyme (IDE) is identified as such a protease and decreased expression of IDE leads to elevated MIP-1 levels in microglial cells. Our structural and proteomic studies offer a molecular basis for selective degradation of MIP-1. The regulated MIP-1 polymerization and selective inactivation of MIP-1 monomers by IDE could aid in controlling the MIP-1 chemotactic gradient for immune surveillance.     

Generalized concentration dependence of globular protein self-diffusion coefficients in aqueous solutions.

The self-diffusion coefficients of globular proteins (myoglobin, bovine serum albumin, barstar, lysozyme) in aqueous solutions at different temperatures and pH values are obtained by pulsed-gradient spin-echo NMR, and their concentration dependence is analyzed. The generalized concentration dependence of globular protein self-diffusion coefficients is empirically established, and compared to the concentration dependence of diffusion coefficients of flexible polymers and rigid Brownian particles.     

The relative importance of plasticity versus genetic differentiation in explaining between population differences; a meta‐analysis

Both plasticity and genetic differentiation can contribute to phenotypic differences between populations. Using data on non‐fitness traits from reciprocal transplant studies, we show that approximately 60% of traits exhibit co‐gradient variation whereby genetic differences and plasticity‐induced differences between populations are the same sign. In these cases, plasticity is about twice as important as genetic differentiation in explaining phenotypic divergence. In contrast to fitness traits, the amount of genotype by environment interaction is small. Of the 40% of traits that exhibit counter‐gradient variation the majority seem to be hyperplastic whereby non‐native individuals express phenotypes that exceed those of native individuals. In about 20% of cases plasticity causes non‐native phenotypes to diverge from the native phenotype to a greater extent than if plasticity was absent, consistent with maladaptive plasticity. The degree to which genetic differentiation versus plasticity can explain phenotypic divergence varies a lot between species, but our proxies for motility and migration explain little of this variation.     

Explaining global variation in the latitudinal diversity gradient: Meta‐analysis confirms known patterns and uncovers new ones

Aim

The pattern of increasing biological diversity from high latitudes to the equator [latitudinal diversity gradient (LDG)] has been recognized for > 200 years. Empirical studies have documented this pattern across many different organisms and locations. Our goal was to quantify the evidence for the global LDG and the associated spatial, taxonomic and environmental factors. We performed a meta‐analysis on a large number of individual LDGs that have been published in the 14 years since Hillebrand's ground‐breaking meta‐analysis of the LDG, using meta‐analysis and meta‐regression approaches largely new to the fields of ecology and biogeography.

Location

Global.

Time period

January 2003–September 2015.

Major taxa studied

Bacteria, protists, plants, fungi and animals.

Methods

We synthesized the outcomes of 389 individual cases of LDGs from 199 papers published since 2003, using hierarchical mixed‐effects meta‐analysis and multiple meta‐regression. Additionally, we re‐analysed Hillebrand's original dataset using modern methods.

Results

We confirmed the generality of the LDG, but found the pattern to be weaker than was found in Hillebrand's study. We identified previously unreported variation in LDG strength and slope across longitude, with evidence that the LDG is strongest in the Western Hemisphere. Locational characteristics, such as habitat and latitude range, contributed significantly to LDG strength, whereas organismal characteristics, including taxonomic group and trophic level, did not. Modern meta‐analytical models that incorporate hierarchical structure led to more conservative and sometimes contrasting effect size estimates relative to Hillebrand's initial analysis, whereas meta‐regression revealed underlying patterns in Hillebrand's dataset that were not apparent with a traditional analysis.

Main conclusions

We present evidence of global latitudinal, longitudinal and habitat‐based patterns in the LDG, which are apparent across both marine and terrestrial realms and over a broad taxonomic range of organisms, from bacteria to plants and vertebrates.     

Physical and Chemical Limnology of 34 Lentic Waterbodies along a Tropical‐to‐Alpine Altitudinal Gradient in Nepal

Physical and chemical factors were studied in 34 lentic waterbodies distributed along a steep altitudinal gradient ranging from tropical (77 m) to high alpine (up to 4,980 m) environments in Nepal. Bicarbonate and calcium were dominant among anions and cations, respectively, reflecting a strong influence of carbonate weathering and watershed area, rather than altitudinal climate. The relative patterns of dominant ions were similar among lakes in all altitudinal regions, although total concentrations increased with decreasing altitude. Total suspended solids were relatively high in the study lakes, as is also typical of rivers in the Ganges watershed. Suspended solids had a greater influence on water transparency than did algal biomass in the study lakes. In general, high‐altitude waterbodies were oligotrophic, while those at low altitude were eutrophic. The productivity of high‐altitude study lakes appeared to be limited by both available phosphorus and nitrogen, while lowland ones were nitrogen‐limited. (© 2005 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Altitudinal variation for stress resistance traits and thermal adaptation in adult Drosophila buzzatii from the New World

Multiple stress resistance traits were investigated in the cactophilic fly Drosophila buzzatii. Adults from seven populations derived from North-Western Argentina were compared with respect to traits relevant for thermal stress resistance and for resistance to other forms of environmental stress. The populations were collected along an altitudinal gradient spanning more than 2000 m in height, showing large climatic differences. The results suggest that knock-down resistance to heat stress, desiccation resistance and Hsp70 expression at a relatively severe stressful temperature best reflect thermal adaptation in this species. Furthermore, cold resistance seemed to be of less importance than heat resistance, at least for the adult life stage, in these populations. Clinal variation in thermal resistance traits over short geographical distances suggests relatively strong adaptive differentiation of the populations. This study provides the first evidence for altitudinal differentiation in stress-related traits, and suggests that Hsp70 expression level can be related to altitudinal clines of heat-stress resistance.     

Consistent patterns in diatom assemblages and diversity measures across water‐depth gradients from eight Boreal lakes from north‐western Ontario (Canada)

1. Until recently, the distribution of diatom species assemblages and their attributes (e.g. species richness and evenness) in relation to water depth have been identified but not quantified, especially across several lakes in a region. Here, we examined diatom assemblages in the surface sediment across a water‐depth gradient in eight small, boreal lakes in north‐western Ontario, minimally disturbed by human activities. 2. Surface‐sediment diatom assemblages were collected within each lake along a gentle slope from near‐shore to the centre deep basin of the lake, at a resolution of ～1 m water depth. Analysis of sedimentary samples provided an integrated view of assemblages that were living in the lake over several years and enabled a high‐resolution analysis of many lakes. The study lakes ranged in water chemistry, morphology and size and are located along an east–west transect approximately 250 km long in north‐western Ontario (Canada). 3. The majority of diatom species were distributed along a continuum of depth, with those taxa having similar habitat requirements forming distinct, though overlapping, assemblages. Three major zones of diatom assemblages in each lake were consistently identified: (i) a near‐shore assemblage of Achnanthes (sensu lato), Nitzschia, Cymbella (sensu lato) and other benthic species; (ii) a mid‐depth assemblage of small Fragilaria (sensu lato)/small Aulacoseira and various Navicula taxa; and (iii) a deep‐water assemblage of planktonic origin (mainly Discotella spp.). 4. The depth of the transition between assemblage zones varied between the eight lakes. The boundary between the deep‐water planktonic zone and the mid‐depth benthic zone varied according to water chemistry and was probably related to light attenuation. The boundary was deeper in lakes with the lower dissolved organic carbon and total phosphorus (TP) (i.e. less light attenuation) and vice versa. 5. Generally, species richness, species evenness and turnover rate of species as a function of depth were significantly lower in the planktonic assemblage zone in comparison with the two zones nearer the shore. Reproducibility of species and assemblage distributions across the depth gradient of the lakes illustrated that, despite potential for sediment transport, detailed ecological characterisation of diatom species can be gleaned from sedimentary data. Such data are often lacking, particularly for near‐shore benthic species.     

Longitudinal and Vertical Spatial Gradients in the Distribution of Fish within a Canyon‐shaped Reservoir

The large‐scale spatial distribution of fish was investigated within a morphometrically simple canyon‐shaped reservoir with a single major tributary and a longitudinal trophic gradient (Římov Reservoir, Czech Republic). Samples of fish were taken by Nordic survey gill nets (several mesh sizes from 8 to 70 mm knot to knot) installed as surface nets at several offshore areas located along the longitudinal axis of the reservoir. Surveys were carried out in late summer during 1999–2003. An obvious distribution gradient of fish was revealed along the longitudinal axis of the Římov Reservoir. The total relative fish abundance and biomass (catch per unit effort) decreased considerably from the upstream end of the reservoir toward the dam. Roach (Rutilus rutilus), bleak (Alburnus alburnus) and bream (Abramis brama) comprised the bulk of catches at all areas. Enhanced dominance of bream was observed in the fish assemblage at the uppermost, more eutrophic area of the reservoir. The highest number of fish species and the highest abundance of young‐of‐the‐year fish were also observed in the tributary area. In the downstream part of the reservoir, gill net surveys along the vertical depth profiles indicated that offshore fish occupied mostly the epilimnion. Extreme flood events affected the Římov Reservoir, however, it seemed they had no significant impact on the gradients described. (© 2004 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Trait variation in response to varying winter temperatures,diversity patterns and signatures of selection along the latitudinal distribution of the widespread grassland plant Arrhenatherum elatius

Across Europe, genetic diversity can be expected to decline toward the North because of stochastic and selective effects which may imply diminished phenotypic variation and less potential for future genetic adaptations to environmental change. Understanding such latitudinal patterns can aid provenance selection for breeding or assisted migration approaches. In an experiment simulating different winter temperatures, we assessed quantitative trait variation, genetic diversity, and differentiation for natural populations of the grass Arrhenatherum elatius originating from a large latitudinal gradient. In general, populations from the North grew smaller and had a lower flowering probability. Toward the North, the absolute plastic response to the different winter conditions as well as heritability for biomass production significantly declined. Genetic differentiation in plant height and probability of flowering were very strong and significantly higher than under neutral expectations derived from SNP data, suggesting adaptive differentiation. Differentiation in biomass production did not exceed but mirrored patterns for neutral genetic differentiation, suggesting that migration‐related processes caused the observed clinal trait variation. Our results demonstrate that genetic diversity and trait differentiation patterns for A. elatius along a latitudinal gradient are likely shaped by both local selection and genetic drift.     

Evidence of counter‐gradient growth in western pond turtles (Actinemys marmorata) across thermal gradients

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Extinction and time help drive the marine‐terrestrial biodiversity gradient: is the ocean a deathtrap?

The marine‐terrestrial richness gradient is among Earth's most dramatic biodiversity patterns, but its causes remain poorly understood. Here, we analyse detailed phylogenies of amniote clades, paleontological data and simulations to reveal the mechanisms underlying low marine richness, emphasising speciation, extinction and colonisation. We show that differences in diversification rates (speciation minus extinction) between habitats are often weak and inconsistent with observed richness patterns. Instead, the richness gradient is explained by limited time for speciation in marine habitats, since all extant marine clades are relatively young. Paleontological data show that older marine invasions have consistently ended in extinction. Simulations show that marine extinctions help drive the pattern of young, depauperate marine clades. This role for extinction is not discernible from molecular phylogenies alone, and not predicted by most previously hypothesised explanations for this gradient. Our results have important implications for the marine‐terrestrial biodiversity gradient, and studies of biodiversity gradients in general.     

Use of the rpoB gene as an alternative to the V3 gene for the identification of spoilage and pathogenic bacteria species in milk and milk products

Aim: To evaluate the rpoB gene as an alternative to the V3 gene for the identification of bacterial species in milk and milk products. Methods and Results: DNA obtained from different bacterial species strains was amplified by PCR using rpoB primers. PCR products of each bacterial species were then separated on a DGGE gel. The molecular fingerprints of the bacterial species tested were integrated into a database. The DGGE analysis shows a single band for the rpoB gene amplicons per each bacterial species. Comparison of electrophoretic profiles obtained from V3 16S rDNA amplification with those from this study obtained with rpoB showed that for some bacterial species that co‐migrated after amplification of the V3 region, distinct bands were observed on the gel with the amplification products of the rpoB region. Conclusions: The results obtained in this study show the discriminatory power of the rpoB gene, indicating that it can be used as an alternative to the V3 16S rRNA gene for the identification of bacterial species in milk and milk products. Significance and Impact of the Study: PCR‐DGGE targeting the rpoB gene is a way of discriminating the bacterial species that co‐migrated with the amplification of the V3 gene and so avoids the sequencing of the co‐migrating bands.     

Seed‐dispersal networks respond differently to resource effects in open and forest habitats

While patterns in species diversity have been well studied across large‐scale environmental gradients, little is known about how species’ interaction networks change in response to abiotic and biotic factors across such gradients. Here we studied seed‐dispersal networks on 50 study plots distributed over ten different habitat types on the southern slopes of Mt Kilimanjaro, Tanzania, to disentangle the effects of climate, habitat structure, fruit diversity and fruit availability on different measures of interaction diversity. We used direct observations to record the interactions of frugivorous birds and mammals with fleshy‐fruited plants and recorded climatic conditions, habitat structure, fruit diversity and availability. We found that Shannon interaction diversity (H) increased with fruit diversity and availability, whereas interaction evenness (E_H) and network specialization (H₂) responded differently to changes in fruit availability depending on habitat structure. The direction of the effects of fruit availability on E_H and H₂ differed between open habitats at the mountain base and structurally complex habitats in the forest belt. Our findings illustrate that interaction networks react differently to changes in environmental conditions in different ecosystems. Hence, our findings demonstrate that future projections of network structure and associated ecosystem functions need to account for habitat differences among ecosystems.     

Demystifying the marine‐terrestrial biodiversity gradient: response to Vermeij et al.

We respond to seven criticisms made by Vermeij et al. ( 2018 ) regarding Miller & Wiens ( 2017 ). Their criticisms generally reflect misunderstandings, unsupported speculations, and topics that were explicitly addressed in our paper.