A comparison of the diversity of Jivaroan Gardens with that of the tropical forest

The proposition that tropical polycultural gardens simulate the structure and dynamics of the surrounding forest is examined in the light of research on Jivaroan manioc cultivation. Garden transects were used to measure the diversity of intercropped species and of locally recognized varieties of manioc. Huambisa and Aguaruna Jivaro gardens have much lower species diversities than the surrounding forest, even though crop compositions reflect the age, topography, and soil type of the swiddens. Furthermore, the number of manioc varieties is far greater than that of all other crop species combined. It is argued that a pure stand of Jivaroan manioc can itself be considered a polycrop of distinct cultivars with differing branching patterns, leaf shapes, and growth periods.     

Genetic variation of morphological characters within a single isolate of the endomycorrhizal fungus Glomus clarum (Glomaceae)

The nature of variation in morphological characters in spores of arbuscular endomycorrhizal fungi (Order Glomales, Class Zygomycetes) has received little attention, despite the importance of these characters in modern taxonomy of the order. We tested the hypothesis that genetic variation exists in spore size and color (presumably important taxonomic characters) within a single isolate of the glomalean fungus Glomus clarum. Phenotypic variation in size and color of spores was determined from a pot culture population (designated P). A 10% selection pressure was imposed on replicate pot cultures of the first progeny culture generation (G1) by selecting the smallest, largest, yellowest, and whitest spores from the P generation and inoculating Sorghum bicolor plants. The experiment was repeated for another generation (G2), but with a 5% selection pressure. In both the G1 and G2 generations, significant differences in spore size and color were observed among the various treatments, indicating substantial genetic variation in these characters. Despite efforts to keep the physical environment constant across generations, we observed variation in the overall means of spore size and color among the generations (regardless of treatment), indicating a strong nongenetic influence on character expression. This study provides empirical evidence that will help delimit species boundaries among isolates of Glomus clarum and similar morphospecies. It also demonstrates a promising method to help elucidate the nature of character diversity in obligately asexual fungi.     

Variation in monoculture and in mixture for grain yield and other characters in spring barley

Fourteen north-west European spring barley cultivars were grown alone or in binary mixtures sampled according to a partial diallel scheme. On the basis of the association between cultivars in mixture and monoculture, three groups of characters were distinguished. Group A characters, plant height, ear weight/tiller, grain yield/tiller, number of grains/tiller and 1000-grain weight, showed strong positive associations between performance in monoculture and mixture. Group B characters, number of tillers/plant and harvest index showed incomplete positive associations, while for group C characters, dry matter/plant, ear weight/plant, grain yield/plant and number of grains/plant, associations were weak or non-existent. Compound characters in group C showed less genetic variation in monoculture and lower general competitive effects in mixture than component characters in groups A or B. These results clearly indicate that while selection for grain yield and other characters on a per plant basis (group C characters) is confounded by intergenotypic competition, characters such as the yield components number of grains/tiller and 1000-grain weight (group A characters) are hardly affected in this range of cultivars. Selection for opposing group A characters may start in the F₂ generation, while any selection for group B and C characters should be delayed until later generations. The merits of indirect selection for yield using visual assessment of yield components are discussed. Separate analyses obtained by the inclusion of spring wheat cv. Timmo in monoculture and in the set of mixtures indicated that the use of spring wheat plants to minimise intergenotypic competition ranges from superfluous (group A characters) to useless (group C characters). A large degree of mixture advantage and the lack of complementary dominance and suppression between competitor and associate was attributed to the relatively low density of plants in the experiment which, though suitable for single plant selection, is not typical of normal seed rates for cropping.     

Starch granule size and the domestication of manioc (Manihot esculenta) and sweet potato (Ipomoea batatas)

Archaeological studies of plant remains have indicated that an increase in seed size is frequently correlated with both intensive cultivation and domestication of seed crop plants. To test if starch granules of domesticated root crops are significantly larger than those of wild or less intensively cultivated plants, archaeological and modern specimens of manioc and sweet potato were sampled for starch granules, and granule size was compared across a temporal sequence. The results indicate that a gross generalization can be made that modern specimens of both manioc and sweet potato yield larger starch granules than some archaeological specimens. It does appear, however, that modern domesticated manioc roots produce significantly larger-sized starch granules than those of its purported wild ancestor. Additionally, there exist two lines of evidence that the coastal Peruvian and lowland Neotropical regional types of manioc differ from one another and have been separate for several millennia. These findings indicate that manioc may have been domesticated more than once.     

利用DNA ISSR分子标记技术对芍药属植物栽培品种的分类鉴定方法

以利用DNA ISSR分子标记逐级区分品种为主要研究目标,通过ISSR引物的设计与实验筛选,取得了进展。该方法类似于经典的植物形态检索表式的分类策略,不同之处在于利用基因组DNA分子性状作为品种分类的依据,即"ISSR引物结合位点"与"DNA ISSR片段长度差异"的组合信息。该方法不仅可以有效鉴定品种,而且可以很容易地生成富含遗传变异信息的0、1矩阵,通过运算揭示品种间的遗传关系与演化规律。该方法成本低廉、操作便捷,对于建立客观、科学的牡丹及芍药品种分类体系,对于芍药属品种种质资源的保存、评价与合理利用具有重要价值。应该加大支持力度推进其实际应用。     

On the origin of the sweet-smelling Parma violet cultivars (Violaceae): wide intraspecific hybridization, sterility, and sexual reproduction

Parma violets are reputed for their double, fragrant flowers and have been cultivated for centuries in Europe. However, due to a rather atypical morphology their taxonomic affinity has not been clarified. Authors have proposed an origin from three possible species, Viola alba, V. odorata, or V. suavis, or a hybrid origin. Using both ITS sequence variation and allozyme variation in 14 putative loci, we showed that the Parma violet cultivars have their origin within Viola alba and that they are best included in the Mediterranean subsp. dehnhardtii. There is no trace of interspecific hybridization. However, the cultivars appear to have a single origin in a wide hybrid within V. alba, involving parental plants from the eastern and western Mediterranean region; historical literature sources seem to indicate Turkey and Italy, respectively. The Parma violet cultivars possess high levels of allozyme heterozygosity and to some extent also within-individual ITS sequence variation. Losses of heterozygosity and within-individual ITS sequence variation in some of the cultivars indicate subsequent rare events of sexual reproduction, presumably through cleistogamous seed set. We unambiguously identify the closest wild relative of this group of cultivars, allowing growers to develop new selection procedures, and show a peculiar molecular process associated with human selection.     

The mis-measure of manioc (Manihot esculenta,Euphorbiaceae)

The distinction between “bitter” and “sweet” (toxic and non-toxic) varieties of the cyanide-containing food crop manioc (Manihot esculenta, Euphorbiaceae) has a long tradition in the tropical forest areas of South and Central America where it was first cultivated. Yet this distinction has no taxonomic basis. The levels of cyanogenic glucosides found in manioc varieties not only vary widely, but do not correspond with any other known morphological or ecological feature. Nonetheless, these two “varieties” are commonly reported to have distinct geographical and cultural distributions and each is associated with a particular traditional food complex. This paper reviews the literature regarding the nature, distribution, and traditional uses of manioc varieties and concludes that (1) the geographical and cultural distribution of bitter and sweet varieties of manioc may not be as distinct as has been thought; (2) traditional categories of bitter and sweet manioc may stem more from culturally derived belief systems than from actual known levels of toxicity; and (3) the choice of complex and labor intensive processing methods usually associated with bitter manioc may not be required for detoxification but rather for the derived food products, particularly manioc flour.     

Quantitative dissection of color patterning in the foliar ornamental coleus

Coleus (Coleus scutellarioides) is a popular ornamental plant that exhibits a diverse array of foliar color patterns. New cultivars are currently hand selected by both amateur and experienced plant breeders. In this study, we reimagine breeding for color patterning using a quantitative color analysis framework. Despite impressive advances in high-throughput data collection and processing, complex color patterns remain challenging to extract from image datasets. Using a phenotyping approach called “ColourQuant,” we extract and analyze pigmentation patterns from one of the largest coleus breeding populations in the world. Working with this massive dataset, we can analyze quantitative relationships between maternal plants and their progeny, identify features that underlie breeder-selections, and collect and compare public input on trait preferences. This study is one of the most comprehensive explorations into complex color patterning in plant biology and provides insights and tools for exploring the color pallet of the plant kingdom.

Quantitative analysis of color patterning in a large coleus breeding population reveals color features that are associated with aesthetic value.     

Assessing genetic potential in germplasm collections of crop plants by marker-trait association: a case study for potatoes with quantitative variation of resistance to late blight and maturity type

Genetic diversity of crop plants resulting from breeding and selection is preserved in gene banks. Utilization of such materials for further crop improvement depends on knowledge of agronomic performance and useful traits, which is usually obtained by phenotypic evaluation. Associations between DNA markers and agronomic characters in collections of crop plants would (i) allow assessment of the genetic potential of specific genotypes prior to phenotypic evaluation, (ii) identify superior trait alleles in germplasm collections, (iii) facilitate high resolution QTL mapping and (iv) validate candidate genes responsible for quantitative agronomic characters. The feasibility of association mapping was tested in a gene bank collection of 600 potato cultivars bred between 1850 and 1990 in different countries. The cultivars were genotyped with five DNA markers linked to previously mapped QTL for resistance to late blight and plant maturity. Specific DNA fragments were tested for association with these quantitative characters based on passport evaluation data. Highly significant association with QTL for resistance to late blight and plant maturity was detected with PCR markers specific for R1, a major gene for resistance to late blight, and anonymous PCR markers flanking the R1 locus at 0.2 Centimorgan genetic distance. The marker alleles associated with increased resistance and later plant maturity were traced to an introgression from the wild species S. demissum. These DNA markers are the first marker that are diagnostic for quantitative agronomic characters in a large collection of cultivars.     

二月兰形态性状的变异分析

二月兰(Orychophragmus violaceus)是集食用、保健、饲用和观赏于一身的优良地被植物。其遗传背景单一、生长周期短,是发展模式植物的优良材料。为了开发其育种价值,我们对二月兰的形态变异式样进行了初步分析。共选取了北京和南京地区的7个居群的34个表型性状进行观测。通过计算分析发现:株高、茎和花序分枝等性状受环境影响较大,因而其分类价值不大;叶形、毛被、叶缘锯齿等性状的变异在居群内是连续的,所以也不是可靠的分类性状;而花部性状的一些变异,包括花瓣的颜色、大小、形态,基本不受环境影响,且这些变异在居群内是不连续的,所以其分类价值相对较高。对17个数值性状的方差分析和多重比较结果表明,在同一年度内,大部分性状在不同地区间差异不显著,在居群间差异极显著;而在不同年度内,居群间差异不显著。最后,对7个居群和30个表型性状进行了数量分类:Q分析表明北京颐和园、南京紫金山山顶公园和南京中山植物园居群比较相似,而北京圆明园、北京海淀区后八家苗圃、南京情侣园和北京天坛公园居群较相似。R分析揭示了二月兰花部、叶部、反映植株毛被和颜色以及表现植株生长量的性状间均具有一定的相关性。这些研究可为种下等级的划分和进一步的遗传研究以及品种培育提供一定的参数资料。     

Tolerance to manganese toxicity among cultivars of lucerne (Medicago sativa L.)

Two sand culture experiments were carried out to identify commercial cultivars of lucerne or alfalfa (Medicago sativa L.) which contain elite, Mn-tolerant plants for use in a selection programme to increase the acid-soil tolerance of this perennial legume. Differences in Mn tolerance, both within and between cultivars, were observed when a range of cultivars were exposed to regular waterings with dilute nutrient solution containing 20 or 25 mg Mn L^–1. Under these moderately toxic regimes, the winter dormant cultivars Cimmaron and WL 318 were found to contain elite plants that had greater dry matter yields than their mean cultivar yield under non-toxic Mn conditions.Cultivars which contained elite, Mn-tolerant plants could not be identified by phenotypic characteristics such as their height or their toxicity symptom score, nor by their winter dormancy class. Possible reasons for the occurrence of elite plants in these cultivars are discussed. The elite, high yielding Mn-tolerant plants could not be identified from the other plants within their cultivar population by their Mn toxicity symptoms nor by their height.     

Incongruence between cladistic and taxonomic systems

Cladistic and taxonomic treatments of the same plant group usually exhibit a mixture of congruences and incongruences. The question arises in the case of the incongruences as to which version is right and which is wrong. Many cladists believe that cladistics is a superior approach and gives the best results. There are several conceptual and methodological differences between cladistics and taxonomy that cause incongruence. One important conceptual difference is the use of different criteria for grouping: order of branching vs. similarity and difference (clades vs. taxa). Another is the policy regarding paraphyletic groups: to ban them in cladistics but ignore the ban in taxonomy. These two differences automatically lead to some incongruences. One approach is not right and the other wrong; each is operating by its own standards. However, when cladists apply the paraphyly rule to a taxonomic system and conclude that it needs revision to eliminate paraphyly, as cladists often do, they are judging the taxonomic system by a wrong standard. Several differences between the two schools in the use and handling of characters can also cause incongruence. First consider phenetic characters. Taxonomy uses a very wide range of these, whereas phenetic cladistics sets restrictions on the selection of characters, which deprive it of potentially useful evidence. Taxonomic systems generally rest on a broader empirical foundation than phenetic cladistic systems. Next, consider molecular cladistics, which is the leader in the use of DNA evidence. Two sources of incongruence between molecular cladistics and taxonomic systems can come into play here. First, the molecular evidence used in cladistics comes mainly from cytoplasmic organelles, whereas taxonomic systems are based on characters that are determined mainly by the chromosomal genome. More generally, the database in a molecular cladogram is, in itself, too narrow to serve as a foundation for an organismic classification. In cases of incongruence, the molecular evidence can be a reliable indicator of taxonomic relationships sometimes, misleading other times, and may afford no clear basis for a systematic decision. In this situation, it is helpful, indeed necessary, to integrate the molecular evidence with the phenetic evidence and bring more characters to bear on the question.     

THE USE OF METABOLIC DATA IN LICHENOLOGY AT THE SPECIES AND SUBSPECIFIC LEVELS

The different views on the taxonomic use of chemical characters in lichenology are reviewed using the opposing opinions of W. L. Culberson and Rogers and the somewhat intermediate position of Hawksworth as examples. The differing significance of secondary metabolites is illustrated with two examples in the genusLecanora. InL. campestrisand similar species, the chemistry has been useful to differentiate morphologically similar species, which subsequently were found to differ in minute anatomical differences as well. However, inL. caesiorubella, a remarkable chemical variation can be observed that is not correlated with other differences and is thus interpreted as intraspecific variation. Ana posteriorivaluation of the taxonomic significance of metabolic data is preferred.     

Rhus coriaria var. zebaria (Anacaridaceae), a new variety from Iraq

Rhus coriaria var. zebaria from Duhok/Aqrae, Kurdistan, Iraq is described as a variety new to science. Field expeditions started in spring 2011, continued during 2012 and 2013 with the aim of collecting sumac specimens from different physiographic regions of Kurdistan, Iraq. A total of ten plants for each variety were sampled. An equal number of tagged herbarium specimens were prepared. The holotype was designated and deposited together with other herbarium specimens in the herbarium of the Faculty of Agriculture and Forestry, Univ. of Duhok. Morphological characters of the leaf, inflorescence, flowers, infructescence, and fruit were studied. The pH value of the pericarp in addition to the hilum length was measured. Results were compared with Rhus coriaria L. var. coriaria. The most distinctive feature of the new variety is the dull whitish brown color of the drupe pericarp of var. zebaria as compared to the reddish brown color of the drupe pericarp of var. coriaria. The whitish color of the drupes of var. zebaria, in combination with their larger size, represents diagnostic characters for distinguishing this variety. In contrast, most leaf characters are of little or no taxonomic value in this species. Only shape, apex and marginal teeths of the leaflets show minor differences for separating the two varieties. Female and male inflorescences and flowers characters show no significant differences. Both hilum length and pH value characters may be useful for taxonomic application if mean values are taken in consideration.     

AN EXPERIMENTAL EVALUATION OF SELECTION ON COLOR MORPHS OF THE POLYMORPHIC SPIDER ENOPLOGNATHA OVATA (ARANEAE: THERIDIIDAE)

The annual theridiid spider Enoplognatha ovata exhibits a genetically based color polymorphism of red and nonred phenotypes. We evaluated fitness differences between red and nonred spiders by manipulating morph frequencies in a population in which red morphs were rare (≤5%). Broods from red females were introduced to open experimental plots from which natural aggregations of spiders had been repeatedly removed. Control plots in which spiders were removed but not replaced were used to estimate spider immigration from surrounding vegetation into experimental plots. Morph frequencies observed in experimental plots one year following the manipulation were adjusted by immigration estimates and tested against frequencies predicted with the hypothesis of no selection. We found no evidence of selection against red morphs: female morph frequencies in experimental plots did not differ significantly from expected frequencies assuming no selection; female frequencies did not change significantly between subadult and adult stages; and red and nonred spiders exhibited similar fecundities. We conclude that 1) selection on E. ovata color morphs is not likely to be detected easily within a single population because of the swamping effect of dispersal and 2) local patterns of morph-frequency variation may arise more from dispersal and drift than from selection on the color phenotypes.     

Field testing for virus resistance and agronomic performance in transgenic plants

Resistance to specific virus diseases may be added as heritable characteristics to susceptible crop cultivars by transformation of the cultivars with specific virus-derived genes. In practice, however, resistance to the virus varies among transformed plants and transformation often changes cultivar yield and quality characteristics that are agronomically important. Therefore, rigorous selection among hundreds of different transformed plant lines is required to identify lines that are both virus resistant and also conform to or exceed standard characteristics of the original, susceptible cultivar. This paper describes methods we have developed for rapid selection of virus resistance, yield, and quality characteristics among transformed populations of plants.     

The evolutionary history of Antirrhinum suggests that ancestral phenotype combinations survived repeated hybridizations

The model species Antirrhinum majus (the garden snapdragon) has over 20 close wild relatives that are morphologically diverse and adapted to different Mediterranean environments. Hybrids between Antirrhinum species have been used successfully to identify genes underlying their phenotypic differences, and to infer how selection acts on them. To better understand the genetic basis for this diversity, we have examined the evolutionary relationships between Antirrhinum species and how these relate to geography and patterns of phenotypic variation in the genus as a whole. Large population samples and both plastid and multilocus nuclear genotypes resolved the relationships between many species and provided some support for the traditional taxonomic division of the genus into morphological subsections. Morphometric analysis of plants grown in controlled conditions supported the phenotypic distinction of the two largest subsections, and the involvement of multiple underlying genes. Incongruence between nuclear and plastid genotypes further suggested that several species have arisen after hybridization between subsections, and that some species continue to hybridize. However, all potential hybrids appear to have retained a phenotype similar to one of their ancestors, suggesting that ancestral combinations of characters are maintained by selection at many different loci.