不同栖息地破坏格局下具捕食偏爱似然竞争结局的模拟分析

使用元胞自动机模型,对具有捕食偏爱、不同栖息地破坏比例和不同空间破坏格局条件下的捕食-食饵系统中各物种的变化动态进行了模拟分析。在捕食者和两猎物物种共存时:栖息地破坏比例、栖息地破坏的聚集度对猎物物种间强弱关系产生相反的作用,若增加栖息地破坏比例不利于某一猎物生存,则提高聚集度对其有利;适当提高适宜栖息地的聚集度,对所有物种都有利,若聚集度过高,效果相当于减少了栖息地的破坏比例,可能对某些猎物物种不利,但对整体系统有利;被破坏栖息地的聚集度发生变化时,捕食者的反应更敏感;在一定条件下,增强弱势种群的捕食偏爱会有助于其生存。     

Processes generating macroevolutionary patterns of morphological variation in birds: a simulation study

Multivariate patterns of morphological variation in birds are analysed. In general, there are strong allometric patterns among characters such that most of the variation is confined to a major “size” axis. To analyse the possible evolutionary processes behind this pattern I employed a computer simulation of cladogenesis and anagenesis based on a genetic and a random walk model (drift). All runs started with one species and speciation occurred to generate 100 species. Three levels of correlations were allowed. The results from the simulations were compared with the pattern of variation in finches (Fringillidae). The simulations showed two things. First, the univariate drift model was inappropriate in terms of the level of variation; the observed level was lower than expected by drift. Univariate drift was also unable to create tight correlations among characters as observed in several taxa. Second, to create the pattern observed, either relatively strong genetic correlations (r_g ≈ 0.5), or alternatively strong correlated selection, was needed. This suggests that morphological change in birds in general consists of changes in growth such that species become larger or smaller than their ancestors but retain their ancestral shape. The results stress the importance of stabilising selection in shaping the macroevolutionary patterns of morphological variation in birds.     

The perception of visual images encoded in musical form: a study in cross-modality information transfer

This study demonstrates the ability of blind (previously sighted) and blindfolded (sighted) subjects in reconstructing and identifying a number of visual targets transformed into equivalent musical representations. Visual images are deconstructed through a process which selectively segregates different features of the image into separate packages. These are then encoded in sound and presented as a polyphonic musical melody which resembles a Baroque fugue with many voices, allowing subjects to analyse the component voices selectively in combination, or separately in sequence, in a manner which allows a subject to patch together and bind the different features of the object mentally into a mental percept of a single recognizable entity. The visual targets used in this study included a variety of geometrical figures, simple high-contrast line drawings of man-made objects, natural and urban scenes, etc., translated into sound and presented to the subject in polyphonic musical form.     

Spatial genetic patterns generated by two admixing genetic lineages: a simulation study

Two formerly geographically separated lineages of the zebra mussel Dreissena polymorpha had been given the opportunity to mix extensively across the newly built German Main–Danube canal. We had monitored this admixture of mussel lineages and had described spatial patterns in different genetic measures [Müller et al. 2001 (Heredity, 86: 103); 2002 (Proc. R. Soc. Lond., 269: 1139)]. Here, we present an individual-based model to assess the potential of spatial genetic patterns of detecting and quantifying admixture of mussel lineages. Genetic measures studied are (1) allele frequencies, (2) deviations from Hardy–Weinberg expectations of loci (deficit of heterozygotes, HWD) and (3) linkage disequilibria between unlinked loci (LD). For allele frequencies, we observed a cline over the zone of admixture in all simulations of mixing mussel lineages suggesting that these are appropriate for verification of their mixture. The point of the first contact between lineages was always detectable from their intermediate allele frequencies. LD and HWD were only spatially informative for diagnostic loci or loci with very strong differences in allele frequencies of lineages. For such loci, the probability of disequilibria was highest where lineages had met and decreased towards both sources of lineages Main and Danube. The overall probability of detecting any disequilibrium was higher for LD than for HWD and increased with an increasing rate of genetic interchange. Our simulation results are corroborated by our zebra mussel data and studies from literature. They are applicable to any case of two known linearly mixing genetic lineages.     

Differential patterns of food appreciation during consumption of a simple food in congenitally anosmic individuals: an explorative study

Food is evaluated for various attributes. One of the key food evaluation domains is hedonicity. As food is consumed, its hedonic valence decreases (due to prolonged sensory stimulation) and hedonic habituation results. The aim of the present study was to investigate changes in food pleasantness ratings during consumption of a simple food by individuals without olfactory experience with food as compared to normosmics. 15 congenital anosmics and 15 normosmic controls were each presented with ten 10 g banana slices. Each was visually inspected, then smelled and chewed for ten seconds and subsequently rated for hedonicity on a 21-point scale. There was a significant difference in pleasantness ratings between congenital anosmics and controls (F(1, 26) = 6.71, p = .02) with the anosmics exhibiting higher ratings than the controls, a significant main repeated-measures effect on the ratings (F(1.85, 48) = 12.15, p<.001), which showed a decreasing trend over the course of consumption, as well as a significant portion*group interaction (F(1.85, 48) = 3.54, p = .04), with the anosmic participants experiencing a less pronounced decline. The results of the present explorative study suggest that over the course of consumption of a simple food, congenitally anosmic individuals experience differential patterns of appreciation of food as compared to normosmics. In this particular case, the decrease of hedonic valence was less pronounced in congenital anosmics.     

Scheduling of FMSs with information delays: A simulation study

Practitioners and academicians throughout the world recognize the crucial role played by flexibility within manufacturing organizations, especially those engaged in small batch manufacture. However, although the concept of flexibility has begun to attract increased attention, its interaction with information integration and automation has not captured due attention. For example, it almost always has been assumed that a real-time control mechanism is available for exploiting routing flexibility on the shop floor. While this may be true for FMSs, it generally is not so for the vast majority of conventional manufacturing systems with varying levels of information integration and automation. The lack of a fully integrated and automated control mechanism within such semi-automated flexible manufacturing systems (SAFMSs) would eventually cause delays in the availability of shop status information. In this paper, we study the impact that defined modes of information delay have on the performance of a hypothetical SAFMS through detailed simulation experiments. Given that the level of routing flexibility is a controllable design parameter, our interest is in determining the impact that information delays have on decisions pertaining to the selection of appropriate levels of routing flexibility. To highlight the impact of information delays within the SAFMS, the Taguchi experimental design procedure is adopted as a performance evaluation and analysis vehicle, using makespan as a measure of performance. Simulation results indicate the presence of a system specific tolerance limit, operation below which minimizes performance loss.     

Adult-infant food transfer in common marmosets: an experimental study

Infant marmosets and tamarins obtain solid food items from adults during and after the time of weaning. In addition to providing nutrients, food transfers may provide infants with the opportunity to learn about diet. The aim of this study was to investigate patterns of begging and food transfer in captive groups of common marmosets during tests with 1) palatable novel food, 2) unpalatable novel food, and 3) familiar food. Infants may gain an opportunity to learn about diet breadth by preferentially begging for novel rather than familiar items, while adults may facilitate infant learning by differing in their willingness to transfer food depending upon the food's novelty or palatability. In this study, infants exhibited more interest and begging with novel food items than with familiar ones. However, food transfers were not more likely to occur with novel foods than with familiar ones, and in fact adults were more likely to refuse infant begging attempts with novel foods. The palatability of the food also did not influence the rates of refusal and transfer: adults transferred palatable and unpalatable novel foods with similar frequencies. These results suggest that infant marmosets gain an opportunity to learn about diet breadth by begging for novel foods, but adults do not preferentially transfer novel or palatable food items.     

Stress transfer properties of different commercial dental implants: a finite element study

Dental implantology has high success rates, and a suitable estimation of how stresses are transferred to the surrounding bone sheds insight into the correct design of implant features. In this study, we estimate stress transfer properties of four commercial implants (GMI, Lifecore, Intri and Avinent) that differ significantly in macroscopic geometry. Detailed three-dimensional finite element models were adopted to analyse the behaviour of the bone-implant system depending on the geometry of the implant (two different diameters) and the bone-implant interface condition. Occlusal static forces were applied and their effects on the bone, implant and bone-implant interface were evaluated. Large diameters avoided overload-induced bone resorption. Higher stresses were obtained with a debonded bone-implant interface. Relative micromotions at the bone-implant interface were within the limits required to achieve a good osseointegration. We anticipate that the methodology proposed may be a useful tool for a quantitative and qualitative comparison between different commercial dental implants.     

Non-enzymatic transfer of sequence information under plausible prebiotic conditions

We simulated in our laboratory a prebiotic environment where dry and wet periods were cycled. Under anhydrous conditions, lipid molecules present in the medium could form fluid lamellar matrices and work as organizing agents for the condensation of nucleic acid monomers into polymers. We exposed a mixture of 2′-deoxyribonucleoside 5′-monophosphates and a ssDNA oligomer template to this dry environment at 90 °C under a continuous gentle stream of CO₂ and we followed it with rehydration periods. After five dry/wet cycles we were able to detect the presence of a product that was complementary to the template. The reaction had a 0.5% yield with respect to the template, as measured by staining with the Pico Green^® fluorescent probe. Absent initial template, the product of the reaction remained below the detection limit. In order to characterize the fidelity of replication, the synthesized strand was ligated to adapters, amplified by PCR, and sequenced. The alignment of the sequenced DNA to the expected complementary sequence revealed that the misincorporation rate was 9.9%. We present these results as a proof of concept for the possibility of having non-enzymatic transfer of sequence information in a prebiotically plausible environment.     

The evolutionary genetics of adaptation: a simulation study

It is now clear that the genetic basis of adaptation does not resemble that assumed by the infinitesimal model. Instead, adaptation often involves a modest number of factors of large effect and a greater number of factors of smaller effect. After reviewing relevant experimental studies, I consider recent theoretical attempts to predict the genetic architecture of adaptation from first principles. In particular, I review the history of work on Fisher's geometric model of adaptation, including recent studies which suggest that adaptation should be characterized by exponential distributions of gene effects. I also present the results of new simulation studies that test the robustness of this finding. I explore the effects of changes in the distribution of mutational effects (absolute versus relative) as well as in the nature of the character studied (total phenotypic effect versus single characters). The results show that adaptation towards a fixed optimum is generally characterized by an exponential effects trend.     

Activity patterns in Glossina longipennis : a field study using different sampling methods

Abstract .Studies on the daily activity of Glossina longipennis at Galana Ranch using a black odour-baited electrocuting target confirmed its crepuscular activity profile. Activity started at 05.00–05.30 hours and peaked at 06.00–06.30 hours, stopped by 09.00 hours, then started again at 17.00–17.30 hours with a peak at 18.30–19.00 hours, ceasing by 19.30 hours. Females made up 60% of the overall catch, and tended to arrive later than males. Other stationary sampling methods (trap, stationary ox) gave similar results. With the stationary methods, very few flies were caught outside the periods of peak activity (only 1.5% of the total between 09.00 and 17.00 hours); the ox was the only stationary bait to catch any flies between 10.00 and 16.00 hours. More flies were caught throughout the day at mobile baits (8.3% of the male and 2.3% of the female catch was taken between 09.00 and 17.00 hours). Mobile baits caught considerably more males than females (females were 17% of the catch). These males had on average higher fat and haematin reserves. Similar nutritional differences were not observed for females. There were fewer older females (ovarian category 3 or more) in mobile compared to stationary baits, and a lower proportion of the youngest males (wing fray category 1) at natural compared with artificial baits.     

Quantum-classical simulation methods for hydrogen transfer in enzymes: a case study of dihydrofolate reductase

A variety of theoretical approaches have been used to investigate hydrogen transfer in enzymatic reactions. The free energy barriers for hydrogen transfer in enzymes have been calculated using classical molecular dynamics simulations in conjunction with quantum mechanical/molecular mechanical and empirical valence bond potentials. Nuclear quantum effects have been included with several different approaches. Applications of these approaches to hydride transfer in dihydrofolate reductase are consistent with experimental measurements and provide significant insight into the protein conformational changes that facilitate the hydride transfer reaction.     

The role of hydrogen bonds in an aqueous solution of acetylsalicylic acid: a molecular dynamics simulation study

This work focuses on the role of the dynamic hydrogen bonds (HB) formed in an aqueous solution of aspirin using molecular dynamics simulation. The statistics reveal the existence of internal HB that inhibit the rotational movements of the acetyl and the carboxylic acid groups, forcing the molecule to adopt a closed conformer structure in water, and playing an important role in stabilizing this conformation.     

The efficiency of adaptive search tactics for different prey distribution patterns: a simulation model based on the behaviour of juvenile plaice

Juvenile plaice Pleuronectes platessa are particularly useful for studying forager search behaviour because their search paths are essentially two dimensional, and punctuated by natural stops. Their prey occur in a range of natural distributions from highly aggregated to over‐dispersed. Juvenile plaice use area‐restricted search near aggregated prey and extensive search, consisting of longer moves and fewer turns, between aggregations and when searching for dispersed prey. They search for less conspicuous prey items mainly in the pauses between movements. This saltatory search behaviour contrasts with the continuous search that is usually assumed in search models. A simulation model of saltatory search behaviour showed that a strategy combining extensive and intensive search allows the efficient exploitation of a range of natural prey distribution patterns, and that it is particularly effective when the search behaviour is controlled by perceived prey density. This allows the predator to respond to the localized aggregations which often occur in nature. The selective use of intensive search was more efficient than the continuous use of extensive search even in prey distribution patterns that were statistically over‐dispersed.     

Oxytocin and cooperation under conditions of uncertainty: The modulating role of incentives and social information

The neuropeptide Oxytocin (OT) has been implicated in many aspects of mammalian social behavior. This study investigates how OT interacts with two well-studied determinants of cooperative behavior: incentives and social information. Participants received OT or a placebo and played two economic games: a Coordination Game (with strong incentives to cooperate) and a Prisoner's Dilemma (with weak cooperative incentives). OT enhanced cooperation only when social information was present, and this effect was significantly more pronounced in the Coordination Game. When social information was lacking, OT surprisingly decreased cooperation. Consistent with the well-established role of OT in trust-building and in social cognition, social information appears to be crucial for OT to boost cooperative expectations in an interdependent social interaction that provides incentives to cooperate. When these cues are absent, OT appears to instead elicit a risk-averse strategy.     

Human visceral fat in different anthropometric patterns and in diabetes: a morphometric study

OBJECTIVE: To evaluate the cellularity of the adipose tissue and the size of adipocytes in unrelated adults and investigate any correlation between morphometric and anthropometric or clinical variables. STUDY DESIGN: Surgical biopsies of visceral fat (epiploic appendixes) were obtained from the large intestines of 56 patients. A morphometric model was applied to obtain the volume fraction occupied by adipocytes and the size distribution and number in unit volume of the adipocytes. Body mass index (BMI), lifestyle factors, significant body weight variations and clinical disorders (diabetes) were evaluated. RESULTS: Volume fraction occupied by adipocytes and size distribution and number in unit volume of the adipocytes have an opposite trend in underweight, normal and overweight subjects and subjects with referred gain, normal, or loss weight. Regression analysis reveals a significant negative linear relationship between number in unit volume of the adipocytes and BMI and body weight variations. The group of normal patients is characterized by a unimodal size distribution of adipocytes when compared with the group affected by diabetes, who show a likely plurimodal pattern. CONCLUSION: Our observations seem to confirm the hypothesis that hypertrophy, rather than adipose tissue hyperplasia, plays a fundamental role when significant ponderal variations occur in adult life.     

Numerical simulation of LDL mass transfer in a common carotid artery under pulsatile flows

Symmetrical 30-60% stenosis in carotid artery with a semi-permeable wall under steady/unsteady flows for Newtonian/non-Newtonian fluids is investigated numerically. The results show that the unsteadiness of blood flow, blood pressure rise and LDL component size increase the luminal concentration, LC, of the surface. The maximum LC occurring immediately after the separation point and the non-Newtonian fluid predicts higher LDL accumulation. LC decreased as the recirculation length is increased and reaches maximum at 40% stenosis. This process is used to estimate the time-dependent growth of the arterial wall.     

QTL mapping for combining ability in different population-based NCII designs: a simulation study

The NCII design (North Carolina mating design II) has been widely applied in studies of combining ability and heterosis. The objective of our research was to estimate how different base populations, sample sizes, testcross numbers and heritability influence QTL analyses of combining ability and heterosis. A series of Monte Carlo simulation experiments with QTL mapping were then conducted for the base population performance, testcross population phenotypic values and the general combining ability (GCA), specific combining ability (SCA) and Hmp (midparental heterosis) datasets. The results indicated that: (i) increasing the number of testers did not necessarily enhance the QTL detection power for GCA, but it was significantly related to the QTL effect. (ii) The QTLs identified in the base population may be different from those from GCA dataset. Similar phenomena can be seen from QTL detected in SCA and Hmp datasets. (iii) The QTL detection power for GCA ranked in the order of DH(RIL) based > F₂ based > BC based NCII design, when the heritability was low. The recombinant inbred lines (RILs) (or DHs) allows more recombination and offers higher mapping resolution than other populations. Further, their testcross progeny can be repeatedly generated and phenotyped. Thus, RIL based (or DH based) NCII design was highly recommend for combining ability QTL analysis. Our results expect to facilitate selecting elite parental lines with high combining ability and for geneticists to research the genetic basis of combining ability.     

Bovine pancreatic trypsin inhibitor crystals with different morphologies: a molecular dynamics simulation study

A molecular dynamics simulation study is reported for three polymorphic protein crystals (4PTI, 5PTI and 6PTI) of bovine pancreatic trypsin inhibitor (BPTI). The simulated lattice constants are in good agreement with experimental data, indicating the reliability of force field used. The fluctuation patterns of peptide chains in the three crystals are similar, and the protein structures are fairly well maintained during simulation. We observe that water forms a pronounced hydration layer near the protein surface. The diffusion coefficients of water in the three crystals are smaller than in bulk phase, and thus, the activation energies are higher. The porosity, fluctuation of peptide chains and solvent-accessible surface area as well as the diffusion coefficients of water and counterion in 5PTI are the largest among the three crystals. The diffusion of water and counterion is anisotropic, and the degree of anisotropy increases in the order of 4PTI < 5PTI < 6PTI. Despite a slight difference, the structural and diffusion properties in the three BPTI crystals are generally close. This simulation study reveals that crystal polymorphism does not significantly affect microscopic properties in the BPTI crystals with different morphologies.