Genetic divergence and phylogenetic independence of Far Eastern species in subfamily Leuciscinae (Pisces: Cyprinidae) inferred from mitochondrial DNA analyses

Classification of freshwater fish in the subfamily Leuciscinae, Cyprinidae is hampered by complexity or lack of morphological diversity. In this study, analyses based on mtDNA sequences were undertaken to clarify phylogenetic relationships among Far Eastern, North American and European species in the Leuciscinae. Evolutionary rate in cytochrome b gene (Cyt-b) and D-loop sequences appear to be almost constant in Leuciscinae. The topology of phylogenetic trees generated by neighbor-joining (NJ) and maximum likelihood (ML) methods based on Cyt-b gene and D-loop sequences was similar. Five major clades, designated clades 1-5, and a minor clade were discriminated. Most of the Far Eastern, North American and European species were included in the major clades. Clade 1, comprised almost entirely of Far Eastern phoxinins, is monophyletic and greatly diverged from the other species of Leuciscinae. From the present phylogenetic relationships and the previous studies, we present the following hypotheses with respect to the evolutionary history of the Far Eastern phoxinins. The Far Eastern species should be classified into Far Eastern-specific genera, although ichthyologists have still insisted that the species should be included in the European genera. The Far Eastern clade 1 consists of two subclades, including genera Pseudaspius-Tribolodon and Far Eastern Phoxinus species. According to our phylogenetic analyses, Pseudaspius leptocephalus and Tribolodon species should be reclassified into the same genus. On the basis of evolutionary rate in Cyt-b gene in Cyprinidae, it is estimated that the Far Eastern lineage diverged approximately 10-14 million years ago (mya) from the common ancestor of Leuciscinae. It is deduced that speciation of the Far Eastern species occurred until approximately 4 mya, in relation to the formation of the Sea of Japan and the Japanese Islands.     

Mitochondrial DNA variation pattern in larches of Eastern Siberia and the Far East

Genetic variation has been studied in 32 Eastern Siberian and Far Eastern populations of Larix Mill. with the use of three mitochondrial markers based on polymerase chain reaction. Eight multilocus haplotypes with a heterogeneous spatial distribution (G _ST = 0.788, N _ST = 0.829) have been found, which indicates limited gene flows between populations. Several geographic regions with specific larch haplotype sets have been determined: (1) Japan, (2) southern Sakhalin and the Kuril Islands, (3) Primor’e and Korea, (4) Kamchatka, and (5) Eastern Siberia and the northern Far East. The haplotype fixed in the Kamchatka is absent in the Magadan oblast or Chukotka but is present in southern Primor’e and Sakhalin Island. This may be explained by either the postglacial recolonization of Kamchatka by larch that spread from Primor’e through Sakhalin and the Kuril Islands or its survival through the last glacial maximum in the Kamchatka Peninsula. The biogeography of larch and other woody plants indicate that boreal species have a common history of the colonization of Kamchatka.     

Genetic relationships among Far Eastern species of the family Araliacea inferred by RAPD analysis

A molecular genetic study of Far Eastern species of the family Araliaceae by means of RAPD analysis was conducted. Using 21 primers we assessed variability at 595 loci. Based on matrices of genetic distances D, dendrograms of genetic relationships among eleven species of six genera of this family were constructed. Our results suggest that Acanthopanax sessiliflorus and Eleutherococcus senticosus belong to different genera, Aralia cordata and A. continentalis are different species, and A. elata and A. mandshurica probably cannot be regarded as distinct species. Genetic similarity of Far Eastern A. cordata and American A. hispida is shown.     

Mitochondrial DNA variation pattern in larches of Eastern Siberia and the Far East

Genetic variation has been studied in 32 Eastern Siberian and Far Eastern populations of Larix Mill. with the use of three mitochondrial markers based on polymerase chain reaction. Eight multilocus haplotypes with a heterogeneous spatial distribution (G(ST) = 0.788, N(ST) = 0.829) have been found, which indicates limited gene flows between populations. Several geographic regions with specific larch haplotype sets have been determined: (1) Japan, (2) southern Sakhalin and the Kuril Islands, (3) Primor'e and Korea, (4) Kamchatka, and (5) Eastern Siberia and the northern Far East. The haplotype fixed in the Kamchatka is absent in the Magadan oblast or Chukotka but is present in southern Primor'e and Sakhalin Island. This may be explained by either the postglacial recolonization of Kamchatka by larch that spread from Primor'e through Sakhalin and the Kuril Islands or its survival through the last glacial maximum in the Kamchatka Peninsula. The biogeography of larch and other woody plants indicate that boreal species have a common history of the colonization of Kamchatka.     

Biogeographic characteristics of Far Eastern wasps: A case study with eumenine wasps (Hymenoptera: Vespidae: Eumeninae)

A total of 107 forms of 88 eumenine wasp species occurring in the Far East were used to produce a more comprehensive picture of the geographical pattern of wasps in the Far East. All forms occurring in the Far East were biogeographically classified into 22 types in four larger categories, and a summarized table and discussion are presented. The eumenine wasp fauna of the Far East was characterized as a mixture of a fair number of endemic elements, a moderate number of transpalearctic elements, and some Oriental elements. The endemism of the Far East reached 0.71 at the species/subspecies level when the calculation was based on true Palearctic elements occurring in Far Eastern Russia, the Korean peninsula and Japan proper. The relationship between the Far Eastern fauna and the Central/Western Palearctic faunas was also analyzed and discussed. The species occurring in each treated district was counted, and provides evidence for the importance of the Korean fauna in biodiversity evaluation/estimation of Far Eastern fauna. The similarity index between the Korean Peninsula and Japan proper, the Korean Peninsula and the Russian Far East, and the Russian Far East and Japan proper was calculated to explain possible factors for faunal formation in the Far East. The distributional pattern of each form treated in this study and its relatives is tabulated in Appendix I.     

Molecular phylogenetic relationships of pond frogs distributed in the Palearctic region inferred from DNA sequences of mitochondrial 12S ribosomal RNA and cytochrome b genes

The evolutionary relationships of pond frogs distributed in the Far East and Europe were investigated by analyses of nucleotide sequences of mitochondrial 12S ribosomal RNA (12S rRNA) and cytochrome b (cyt b) genes. The nucleotide sequences of a 412-bp segment of the 12S rRNA gene and a 534-bp segment of the cyt b gene were determined by the PCR-direct sequencing method using 19 frogs belonging to six species and one subspecies distributed in the Palearctic region. Phylogenetic trees were constructed by the neighbor-joining and maximum-likelihood methods using Rana catesbeiana or Xenopus laevis as an outgroup. The 412-bp segment of the 12S rRNA gene contained 65 variable sites including gap sites, and the 534-bp segment of the cyt b gene contained 160 variable sites. The nucleotide sequence divergences of the 12S rRNA gene were 0.25-4.83% within the Far Eastern frogs, 0.25-6.22% within the European frogs, and 8.74-11.24% between the Far Eastern and the European frogs, whereas those of the cyt b gene were 3.64-14.73% within the Far Eastern frogs, 0.38-14.42% within the European frogs, and 16.53-23.58% between the Far Eastern and the European frogs. Although most nucleotide substitutions were at the third codon position of the cyt b gene and were silent mutations, 4 amino acid replacements occurred within the Far Eastern frogs, 4 within the European frogs, and 11 between the Far Eastern and the European frogs. The phylogenetic trees constructed from the nucleotide sequence divergences showed slightly different topologies for the 12S rRNA and cyt b genes. R. esculenta from Ukraine was closely related to R. lessonae from Luxembourg in both the 12S rRNA and the cyt b gene sequences.     

Immediate tasks of introduction of woody plants in Asian Russia

The paper analyzes the studies (beginning with the first works by Laxmann in the early 18th century) of the introduction of woody plants on the territory of Asian Russia. A special attention is given to the main introductory centers of Siberia and Russian Far East. It is shown that the first stage of the tests of the species from various botanical-geographical areas results only in the diversification of the woody species suitable for gardening and landscaping. The further studies require more serious and multidimensional research of the trees and shrubs under the conditions of the primary introduction so as to introduce them into the culture and use for creating artificial landscapes of various functions (forest amelioration, land reclamation, preserving rare and endangered species of the world flora, etc.). The special emphasis is put on the search for botanical-geographical areas as potential donors of introduced species using the method of climate comparison that we have developed. It is recommended to create the introduction centers in Siberia and the Far East.     

Genetic variation and differentiation in striped field mouse Apodemus agrarius inferred from RAPD-PCR analysis

Genetic variation and differentiation of the trans-Palearctic species Apodemus agrarius (striped field mouse), whose range consists of two large isolates-European-Siberian and Far Eastern-Chinese, were examined using RAPD-PCR analysis. The material from the both parts of the range was examined (41 individual of A. agrarius from 18 localities of Russia, Ukraine, Moldova, and Kazakhstan); the Far-Eastern part was represented by samples from the Amur region, Khabarovsk krai, and Primorye (Russia). Differences in frequencies of polymorphic RAPD loci were found between the European-Siberian and the Far Eastern population groups of striped field mouse. No "fixed" differences between them in RAPD spectra were found, and none of the used statistical methods permitted to distinguish with absolute certainty animals from the two range parts. Thus, genetic isolation of the European-Siberian and the Far Eastern population groups of A. agrarius is not strict. These results support the hypothesis on recent dispersal of striped field mouse from East to West Palearctics (during the Holocene climatic optimum, 7000 to 4500 years ago) and subsequent disjunction of the species range (not earlier than 4000-4500 years ago). The Far Eastern population group is more polymorphic than the European-Siberian one, while genetic heterogeneity is more uniformly distributed within it. This is probably explained by both historical events that happened during the species dispersal in the past, and different environmental conditions for the species in different parts of its range. The Far Eastern population group inhabits the area close to the distribution center of A. agrarius. It is likely that this group preserved genetic variation of the formerly integral ancestral form, while some amount of genetic polymorphism could be lost during the species colonization of the Siberian and European areas. To date, the settlement density and population number in general are higher than within the European-Siberian isolate, which seems to account for closer interpopulation associations, intense genetic exchange, and "smoothing" of polymorphism within the Far Eastern population group of A. agrarius.     

Characterization of Digestive Enzymes in the Intestine of the Pacific Halibut Hippoglossus stenolepis Schmidt, 1904 and the Starry Flounder Platichthys stellatus (Pallas, 1788)

The activity and temperature characteristics of hydrolases (maltase, α-amylase, total proteinase, alkaline phosphatase) in the intestine of Far Eastern flatfishes were studied. The character of the temperature dependence differed among the investigated enzymes. The activity of individual hydrolases in the two fish species varied. The results of this study suggest that flatfish intestinal hydrolases are efficient at low temperatures and that the digestive process in flatfishes is well adapted to the conditions in which it functions, thus ensuring optimal vital activity at low temperatures in the Far Eastern seas.Original Russian Text Copyright © 2005 by Biologiya Morya, Korostelev, Nevalenny, Levchenko.     

The comparative statuses of Far Eastern seas and the Northwestern Pacific based on the range of integral characteristics of pelagic macrofauna

Several characteristics, such as macrofauna population density, species richness and diversity, evenness of species by abundance, and mean weight of individuals were used to make a comparison among the pelagic zones of the Far Eastern seas (mainly within the Russian EEZ) and the adjacent waters of the Pacific Ocean.     

Genetic variation and differentiation in striped field mouse <Emphasis Type="Italic">Apodemus agrarius</Emphasis> inferred from RAPD-PCR analysis

Genetic variation and differentiation of the trans-Palearctic species Apodemus agrarius (striped field mouse), whose range consists of two large isolates—European-Siberian and Far Eastern-Chinese, were examined using RAPD-PCR analysis. The material from the both parts of the range was examined (41 individual of A. agrarius from 18 localities of Russia, Ukraine, Moldova, and Kazakhstan); the Far Eastern-Chinese part was represented by samples from the Amur region, Khabarovsk krai, and Primorye (Russia). Differences in frequencies of polymorphic RAPD loci were found between the European-Siberian and the Far Eastern population groups of striped field mouse. No “fixed” differences between them in RAPD spectra were found, and none of the used statistical methods permitted to distinguish with absolute certainty animals from the two range parts. Thus, genetic isolation of the European-Siberian and the Far Eastern population groups of A. agrarius is not strict. These results support the hypothesis on recent dispersal of striped field mouse from East to West Palearctics (during the Holocene climatic optimum, 7000 to 4500 years ago) and subsequent disjunction of the species range (not earlier than 4000–4500 years ago). The Far Eastern population group is more polymorphic than the European-Siberian one, while genetic heterogeneity is more uniformly distributed within it. This is probably explained by both historical events that happened during the species dispersal in the past, and different environmental conditions for the species in different parts of its range. The Far Eastern population group inhabits the area close to the distribution center of A. agrarius. It is likely that this group preserved genetic variation of the formerly integral ancestral form, while some amount of genetic polymorphism could be lost during the species colonization of the Siberian and European areas. To date, the settlement density and population number in general are higher than within the European-Siberian isolate, which seems to account for closer interpopulation associations, intense genetic exchange, and “smoothing” of polymorphism within the Far Eastern population group of A. agrarius.     

Molecular Phylogenetic Analysis of the Endemic Far Eastern Closely Related Oxytropis Species of Section Orobia (Fabaceae)

Russian Journal of Genetics - The questions about the taxonomic status and phylogenetic relationships of the Far Eastern closely related species Oxytropis ochotensis, O. litoralis, O. erecta, O....     

A comparative analysis of the Far Eastern grayling species Thymallus tugarinae and Thymallus grubii flavomaculatus based on the data from mitochondrial DNA cytochrome b gene sequencing

Nucleotide sequences of a fragment of mitochondrial DNA cytochrome b gene were obtained from two species of graylings that inhabit the Russian Far East, viz., Thymallus tugarinae and T. grubii flavomaculatus. A phylogenetic analysis of four Thymallus species, whose relationships have been poorly studied, was performed on these new data as well as on several sequences from the NCBI GenBank sequence database. The rate of genetic divergence between the Far Eastern graylings Thymallus tugarinae and T. g. flavomaculatus corresponded to that between European (T. thymallus) and Arctic (T. arcticus) graylings. Moreover, single nucleotide substitutions that result in alterations of the amino-acid structure of protein products (non-synonymic mutations) were revealed between sequences of the cytochrome b gene in the Far Eastern grayling species. The topology of phylogenetic trees, which was composed by means of Bayesian analysis and the maximum parsimony method, showed four independent phylogenetic lineages of graylings. In addition, the phylogenetic relationships between T. tugarinae and T. g. flavomaculatus were supported statistically. The obtained data indicated that Far Eastern graylings T. tugarinae and T. g. flavomaculatus are distinct species and confirmed that they belong to different phylogenetic lineages, as found earlier.     

Taxonomic review of the genus Symmorphus Wesmael (Hymenoptera: Vespidae: Eumeninae) from the Far East

Far Eastern species of the genus Symmorphus Wesmael are taxonomically reviewed. Fourteen species are recognized. Taxonomic information regarding this group that has been treated fragmentarily is summarized in this study. A revised key is presented, and recognition characteristics and images are supplied for each species.     

Genetic Relationships among Far Eastern Species of the Family Araliaceae Inferred by RAPD Analysis

A molecular genetic study of Far Eastern species of the family Araliaceae by means of RAPD analysis was conducted. Using 21 primers we assessed variability at 595 loci. Based on matrices of genetic distances D, dendrograms of genetic relationships among eleven species of this family were constructed. Our results suggest that Acanthopanax sessiliflorus and Eleutherococcus senticosus belong to different genera, Aralia cordata andA. continentalis are different species, and A. elata and A. mandshurica probably cannot be regarded as distinct species. Genetic similarity of Far Eastern A. cordata and American A. hispida is shown.     

A new species of the genus Palaeagapetus Ulmer (Trichoptera, Hydroptilidae) from Japan

A new species of hydroptilid caddisfly, Palaeagapetus fukuiensis sp. nov., is described based on adult and immature stages from Japan. The habitat and food of this species are noted. This species is more closely similar to the Russian Far Eastern species of Palaeagapetus than to the Japanese species.     

Phylogeography of the mallard Anas platyrhynchos from Eurasia inferred from sequencing of the mtDNA control region

Phylogenetic relationships, demographic history, and geographic distribution of the mtDNA haplotypes of the mallard Anas platyrhynchos were examined in three populations, Indian, Northern European, and Far Eastern. Two divergent halotype groups, A and B, were found in the Far Eastern population, while haplotypes identified in Northern European and Far Eastern populations were exclusively of the A group. The presence of B group haplotypes in the Far Eastern population can be explained either in terms of hybridization of the mallard with spot-billed duck Anas zonorhyncha at the south of the Russian Far East, or by the mtDNA paraphyly in mallards. In general, mallards from Eurasia were characterized by low genetic population differentiation along with slightly expressed phylogeographic structure. The most differentiated was the population from India (??_st = 0.076?0.077), while the difference between Northern European and Far Eastern populations was extremely low (??_st = 0.0029). Differentiation of Anas platyrhynchos Indian population was determined by the fact that a part of the population, inhabiting southern and eastern coasts of the Hindustan Peninsula, was resident.     

On the insect fauna of the Kichiga River basin, northeastern Kamchatka

189 species of insects from 55 families and 9 orders were found in the Kichiga River basin, northeastern Kamchatka Peninsula in 1987–1994: 7 species of Plecoptera, 7 of Odonata, 1 of Orthoptera, 4 of Homoptera, 6 of Heteroptera, 54 of Coleoptera, 73 of Lepidoptera, 15 of Hymenoptera, and 22 species of Diptera. Most of the insect species present in the Kichiga basin have wide ranges: 55 species and subspecies are Holarctic, 52 species have a broad Palaearctic distribution, 10 are Eastern Palaearctic, 8 are Amphi-Pacific, 8 are circumboreal or circumpolar, 4 are Far Eastern or Pacific; 5 species are endemic or subendemic to Kamchatka or some part of the peninsula.     

Exoskeleton anomalies in taiga tick males from populations of the Asian part of Russia

Variation of the exoskeleton is described for 2630 males of the taiga tick Ixodes persulcatus Schulze, 1930 collected by flagging from vegetation in the Far Eastern, Siberian, and Ural Federal Districts of Russia. Two types of conscutum anomalies were found to be prevalent in all the samples. Exoskeleton anomalies were less frequently recorded in the Far Eastern Federal District than in the Siberian and Ural Federal Districts: 6.5 ± 1.05, 29.7 ± 1.03, and 25.8 ± 3.93%, respectively. The observed phenotypic variation seems to be unrelated to anthropogenic impact. In the meridional direction, the taiga tick samples with different frequencies of exoskeleton anomalies correspond to two races of the species.