Cytochrome b barcoding, molecular systematics and geographic differentiation in rabbitfishes (Siganidae)

The fish genus Siganus (Siganidae) is widely distributed in the coastal habitats of all the tropical Indo-Pacific, with 28 nominal species recognized so far, based on general morphology and coloration patterns. A mitochondrial phylogeny of 16 Siganidae species, based on the partial nucleotide sequences of the cytochome b gene, was produced. Individual haplotypes of given nominal species generally clustered at the extremity of long branches, thus validating the current taxonomy. However, S. lineatus haplotypes formed a paraphyletic group including S. guttatus, while S. fuscescens haplotypes were apparently splitted in two groups, calling for further investigation. S. woodlandi and S. argenteus formed a monophyletic group, as expected from their close morphological relatedness, although they were separated by a substantial, 14.5-16.3% nucleotide distance. Among eight species sampled from different locations across the Indo-West Pacific, S. argenteus and S. spinus showed the lowest degree of geographic differentiation, a result that correlated well with their extended pelagic larval stage. Fixation index estimates were high in all six other species tested (S. doliatus, S. fuscescens, S. lineatus, S. puellus, S. punctatus, S. vulpinus). The cytochrome b gene fragment chosen here proved useful as a barcode in Siganidae.     

Dactylogyrids (Monogenoidea) parasitizing the gills of spinefoots (Teleostei: Siganidae): proposal of Glyphidohaptor n. gen., with two new species from the Great Barrier Reef, Australia, and G. plectocirra n. comb. from Ras Mohammed National Park, Egypt

Nine species of Siganus (Perciformes: Siganidae) were examined for dactylogyrids (Monogenoidea) from the Red Sea, Egypt; the Great Barrier Reef, Australia; and the South China Sea, China. Species of Tetrancistrum were found on siganids from all 3 localities; Pseudohaliotrema spp. were restricted to siganids from the Great Barrier Reef; and species representing Glyphidohaptor n. gen. were found on siganids from the Red Sea and Great Barrier Reef. Siganus argenteus from the Red Sea and Siganus vulpinus from the Great Barrier Reef were negative for dactylogyrid parasites. Glyphidohaptor n. gen. is proposed for 3 species (2 species new to science) and the new species are described: Glyphidohaptor phractophallus n. sp. from Siganus fuscescens from the Great Barrier Reef; Glyphidohaptor sigani n. sp. from Siganus doliatus (type host), Siganus punctatus, Siganus corallinus, and Siganus lineatus from the Great Barrier Reef; and Glyphidohaptor plectocirra (Paperna, 1972) n. comb. (= Pseudohaliotrema plectocirra Paperna, 1972) from Siganus luridus and Siganus rivulatus from the Red Sea.     

Phylogenetic relationships and natural hybridization in rabbitfishes (Teleostei: Siganidae) inferred from mitochondrial and nuclear DNA analyses

Phylogenetic relationships of rabbitfishes (the family Siganidae), ecologically important components as primary consumers in coral reef communities, were studied using mitochondrial cytochrome b gene and nuclear ITS1 (internal transcribed spacer 1) sequence analyses. The analyses of 19 out of 22 species known in the Western Pacific region revealed that siganids are genetically clustered into three major clades, which are characterized by some morphological and ecological traits. Between closely related species, such as Siganus guttatus-S. lineatus and S. virgatus-S. doliatus, and also between two morphs recognized in S. corallinus, small but discernible genetic differentiation was found, implying that the components of each pair are incipient species. On the other hand, between some species, such as S. fuscescens-S. canaliculatus and S. unimaculatus-S.vulpinus, individuals of the components of each pair were found to construct a genetic mosaic, suggesting that the components are genetic color morphs within a single biological species, respectively. Moreover, evidence from morphological characters, mtDNA, and nuclear DNA gave an inconsistent picture of identity and relationships for several individuals. They were regarded as hybrids or individuals with hybrid origin. Such instances were observed not only between closely related species, such as S. guttatus-S. lineatus, S. virgatus-S. doliatus, and two morphs (incipient species) in S. corallinus, respectively, but also between distantly related ones, such as S. corallinus-S. puellus. In fact, more than half of the species examined (11/20, when treating the two morphs in S. corallinus as independent species) were involved in hybridization. These suggest that hybridization is much more prevalent in marine fishes than previously assumed, and may have some relevance to their diversification.     

Weight–length relationships for 20 Lessepsian fish species caught by bottom trawl on the coast of Iskenderun Bay (NE Mediterranean Sea, Turkey)

Weight–length relationships were estimated for 20 Lessepsian fish species of the Iskenderun Bay, namely, Apogon nigripinnis , Apogon queketti , Callionymus flamentosus , Cynoglossus sinusarabici , Dussumieria elopsoides , Etrumeus teres , Fistularia commersonii , Lagocephalus spadiceus , Lagocephalus suezensis , Leiognathus kluzingeri , Nemipterus japonicus , Oxyurichthys petersenii , Saurida undosquamis , Sillago sihama , Siganus luridus , Siganus rivulatus , Sphyraena chroysotaeina , Stephanolepis diaspros , Upeneus moluccensis and Upeneus pori . All regressions were found to be significant for all species. This study presents the first estimation of weight–length relationships for six species ( A. queketti , E. teres , F. commersonii , L. suezensis , Nemipterus randalli , and S. luridus ) inhabiting coastal areas of the northeastern Mediterranean Sea.     

Ecology of the acanthocephalan Sclerocollum rubrimaris Schmidt and Paperna, 1978 (Rhadinorhynchidae: Gorgorhynchinae) from wild populations of rabbitfish (genus Siganus) in the northern Red Sea

The abundance, host relationships and microhabitat of Sclerocollum rubrimaris Schmidt & Paperna. 1978 (Rhadinorhynchidae: Gorgorhynchinae) were investigated in wild populations of the herbivorous rabbitfish ( Siganus spp.) from the Gulf of Eilat, northern Red Sea. Siganus rivulatus (Forsskål, 1775) and S. argenteus (Quoy & Gaimard, 1825), judging by the high infection prevalences, are the primary definite hosts, whereas S. luridus (Ruppell, 1828) was only rarely infected and thus regarded as an accessory host. Overdispersion of S. rubrimaris suprapopu-lations was greatest in S. rivulatus. Juvenile worms occurred year-round, but enhanced recruitment was evident in both host populations between February and July. A high parasite abundance observed during spring (March-May) was correlated with an extensive period of pre-spawning algal grazing by the host fish. In S. rivulatus , parasite abundance increased with increasing host size, whereas in S. argenteus it was highest in young hosts, and decreased in larger fish. The variability of infection patterns in the three rabbitfish species probably stems not only from parasite specificity but also from the different habitats, feeding habits and diet preferences. Sclerocollum rubrimaris has a restricted host range and is not known to infect other herbivorous coral reef fish. The main region of attachment of S. rubrimaris is the anterior 5–25% of the gut in both S. rivulatus and S. argenteus , and the mean position of immature worms is significantly more posterior than that of sexually mature individuals.     

Multiplex PCR and RFLP approaches for identification of rabbitfish (Siganus) species using mitochondrial gene regions

Molecular assays are described for the identification of six rabbitfish (Siganus) species. A multiplex PCR assay using primers targeting the mitochondrial cytochrome b region simultaneously identifies four species: Siganus canaliculatus, S. fuscescens, S. javus, and S. spinus. Subsequent RFLP assays of multiplex amplicons differentiate between S. virgatus and S. corallinus based on diagnostic fragments from the mitochondrial cytochrome oxidase I region. Assays were validated with known specimens demonstrating accuracy of the molecular identification. Applied to morphologically indistinguishable early developmental stages, these assays can facilitate studies on species-specific spatio-temporal patterns of larval dispersal and population connectivity to aid fishery management.     

Reproductive cycles and spawning periods of two Lessepsian siganid fishes on the Lebanese coast

A total of 1048 specimens of Siganus rivulatus and Siganus luridus were collected from the Batrun area of the Mediterranean Sea from January 1999 to August 2000. The sex-ratio in both species did not differ significantly from 1 : 1 between size classes or months. For S. rivulatus , the estimated mean length at first maturity ( L _T50) was 132·5 mm for males and 136·5 mm for females, and 139·0 and 142·0 mm, respectively, for male and female S. luridus . Spawning occurred in June in S. rivulatus and from May to July in S. luridus . High temperature in summer appeared to be a limiting factor in the gonadal development of both siganid species, which have reduced their breeding seasons on the Lebanese coast compared to their native Red Sea.     

Antibacterial factors in skin mucus of rabbitfishes

Aqueous extracts from the skin mucus of two species of rabbitfishes Siganus fuscescens and S. guttatus showed antibacterial activity against gram-negative bacteria. Stability tests and chromatographic analyses suggested that the S. fuscescens antibacterial factor is an acidic glycoprotein with a molecular mass of 400 kDa.     

Complete mitochondrial genome of the rabbitfish Siganus fuscescens (Perciformes, Siganidae).

We determined the complete nucleotide sequence of the mitochondrial genome for the rabbitfish Siganus fuscescens (Perciformes, Siganidae). This mitochondrial genome, consisting of 16,491 base pairs (bp), included 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and a noncoding control region similar those found in other vertebrates; the gene order was identical to that of typical vertebrates. Most of the genes of S. fuscescens were encoded on the H-strand, while the ND6 and eight tRNA (Gln, Ala, Asn, Cys, Tyr, Ser [UCN], Glu, and Pro) genes were encoded on the L-strand. The reading frames of ATPase 8 and 6 and those of ND4L and ND4 overlapped by ten and seven nucleotides, respectively. All mitochondrial protein-coding genes began with an ATG start codon, except for CO1, which started with GTG. Open reading frames of S. fuscescens ended with TAA (ND1, CO1, ATPase 8, ND4L, ND5 and ND6), and the remainder had incomplete stop codons, either TA (ATPase 6 and CO3) or T (ND2, CO2, ND3, ND4, and Cytb). The origin of L-strand replication in S. fuscescens was located in a cluster of five tRNA genes (WANCY) and was 34 nucleotides in length. A major noncoding region between the tRNA-Pro and tRNA-Phe genes (828 bp) was considered to be the control region (D-loop). Within this sequence, we identified a conserved sequence block characteristic of this region. The rabbitfish was grouped with Siganus canaliculatus in most parsimony analyses, which showed 100% bootstrap support for their divergence. These findings are useful for inferring phylogenetic relationships and identification within the suborder Acanthuroidei.     

Two spinefoot colour morphs: mottled spinefoot Siganus fuscescens and white-spotted spinefoot Siganus canaliculatus are synonyms

Mottled spinefoot Siganus fuscescens and white-spotted spinefoot Siganus canaliculatus are two similar species that differ subtly in colouration and morphology. Three major mtDNA clades were identified for these species, but individuals were clustered by amplified fragment length polymorphism (AFLP) according to geography rather than morphology, suggesting that the colour morphs are interbreeding.     

Density and height of Sargassum influence rabbitfish (f. Siganidae) settlement on inshore reef flats of the Great Barrier Reef

Macroalgal beds have been suggested to be an important settlement habitat for a diversity of reef fishes, yet few studies have considered how the composition or structure of macroalgal beds may influence fish settlement. The aim of this study was to investigate how the physical characteristics of Sargassum beds, a common macroalga on inshore coral reefs, influence the abundance of recently-settled rabbitfishes (Siganidae) on Orpheus Island, Great Barrier Reef. The abundance of recently-settled rabbitfish (< 3 cm total length), the density and height of Sargassum thalli, and benthic composition were quantified within replicate 1-m² quadrats across 15 mid-reef flat sites. A total of 419 recently-settled rabbitfish from three species (Siganus doliatus, S. lineatus and S. canaliculatus) were recorded across 150 quadrats (range 0–16 individuals m⁻²), with S. doliatus accounting for the majority (85.2%) of individuals recorded. The abundance of S. doliatus and S. lineatus was greatest at moderate Sargassum densities (ca. 20–30 holdfasts m⁻²) and generally increased with Sargassum height and the cover of ‘other’ macroalgae. These findings demonstrate the potential importance of the physical characteristics of macroalgal beds to the settlement of rabbitfishes on inshore reef flats.

     

Spermatozoal ultrastructures of two marine perciform teleost fishes, the goatfish, Paraupeneus spilurus (Mullidae) and the rabbitfish, Siganus fuscescens (Siganidae) from Taiwan

Mature spermatozoa of two perciform teleost fishes, Paraupeneus spilurus (Mullidae) and Siganus fuscescens (Siganidae) from Taiwan were examined using transmission and scanning electron microscopy. Despite the fact that spermatozoa of both species are of the primitive type, the results of the present study highlight the potential application of spermatozoal morphology in studies of fish phylogenetic relationships. To our knowledge, the flattened nucleus observed in P. spilurus spermatozoa is reported for the first time. Several features common to Sigandae spermatozoa-the unusual almost parallel situation of the centrioles, the arrangement of mitochondria and the near absence of shallow nuclear fossa-are significantly different from other common teleost sperm types. These unique features may be synapomorphies for the Siganidae and Mullidae and evidently contribute to the study of phylogenetic relationships in teleosts.     

Estimation of Mercury Intake from Selected Fish Species Commercialized in Alexandria,Southeastern Mediterranean Sea,Egypt

Total Hg concentrations were determined in muscle tissue of some fishes with different feeding habits (12 fish species) obtained from the main fishing locations along the Alexandria coast, a region particularly impacted by historic industrial Hg activities. Health risks to human via dietary intake of the edible portion of fish were assessed by the target hazard quotients (THQs). Mercury maximum concentrations corresponding to fish muscle tissue were found in L. mormyrus, S. rivulatus, and S. luridus (3.56, 2.94, and 1.35 μg g^?1 wet weight, respectively). Thence most of these three species bass (75% of L. mormyrus, 76% of S. rivulatus, and 54% of S. luridus) were greater than a 0.47 μg g^?1 threshold corresponding to a 1 meal per month consumption limit. M. cephalus, S. aurita, S. chrysotaenia, B. boops, and A. djedaba bass (100%) were less than a 0.12 μg g^?1 threshold corresponding to a 4 meals per month safe consumption limit. Mercury THQs values, ranging from 0.11–1.76, were of concern. In particular, the health risk was mainly ascribed to consumption of S. rivulatus (1.72) and L. mormyrus (1.76), although also the TEQs values caused by consuming S. luridus (0.64) were rather high, being close to 1.     

Molecular systematics of the African snake family Lamprophiidae Fitzinger, 1843 (Serpentes: Elapoidea), with particular focus on the genera Lamprophis Fitzinger 1843 and Mehelya Csiki 1903

The snake family Lamprophiidae Fitzinger (Serpentes: Elapoidea) is a putatively Late Eocene radiation of nocturnal snakes endemic to the African continent. It incorporates many of the most characteristic and prolific of Africa's non-venomous snake species, including the widespread type genus Lamprophis Fitzinger, 1843 (house snakes). We used approximately 2500 bases of mitochondrial and nuclear DNA sequence data from 28 (41%) of the approximately 68 recognised lamprophiid species in nine of the eleven genera to investigate phylogenetic structure in the family and to inform taxonomy at the generic level. Cytochrome b, ND4 and tRNA gene sequences (mitochondrial) and c-mos sequences (nuclear) were analysed using Maximum Likelihood, Bayesian Inference and Maximum Parsimony methods. The genus Mehelya Csiki, 1903 was paraphyletic with respect to Gonionotophis Boulenger, 1893. To address this, the concept of Gonionotophis is expanded to include all current Mehelya species. The genus Lamprophis emerged polyphyletic: the enigmatic Lamprophis swazicus was sister to Hormonotus modestus from West Africa, and not closely related to its nominal congeners. It is moved to a new monotypic genus (Inyoka gen. nov.). The remaining Lamprophis species occur in three early-diverging lineages. (1) Lamprophis virgatus and the widely distributed Lamprophis fuliginosus species complex (which also includes Lamprophis lineatus and Lamprophis olivaceus) formed a clade for which the generic name Boaedon Duméril, Bibron & Duméril, 1854 is resurrected. (2) The water snakes (Lycodonomorphus) were nested within Lamprophis (sensu lato), sister to Lamprophis inornatus. We transfer this species to the genus Lycodonomorphus Fitzinger, 1843. (3) We restrict Lamprophis (sensu strictissimo) to a small clade of four species endemic to southern Africa: the type species of Lamprophis Fitzinger, 1843 (Lamprophis aurora) plus Lamprophis fiskii, Lamprophis fuscus and Lamprophis guttatus.     

Growth in juvenile Scarus rivulatus and Ctenochaetus binotatus: a comparison of families Scaridae and Acanthuridae

Daily lapillus growth increments were used to determine age and growth parameters for Scarus rivulatus (Valenciennes) and Ctenochaetus binotatus (Randall) from reefs off Lizard Island in ihe northern Great Barrier Reef. The growth of S. rivulatus increased after settlement whilst growth of C. binotatus decreased after settlement. A check found in the otoliths of both species, and attributed to settlement, was estimated to be from 28 to 47 days for S. rivulatus and from 47 to 74 days for C. binotatus.     

Characterization of genome-wide microsatellite markers in rabbitfishes,an important resource for artisanal fisheries in the Indo-West Pacific

Rabbitfishes are reef-associated fishes that support local fisheries throughout the Indo-West Pacific region. Sound management of the resource requires the development of molecular tools for appropriate stock delimitation of the different species in the family. Microsatellite markers were developed for the cordonnier, Siganus sutor, and their potential for cross-amplification was investigated in 12 congeneric species. A library of 792 repeat-containing sequences was built. Nineteen sets of newly developed primers, and 14 universal finfish microsatellites were tested in S. sutor. Amplification success of the 19 Siganus-specific markers ranged from 32 to 79% in the 12 other Siganus species, slightly decreasing when the genetic distance of the target species to S. sutor increased. Seventeen of these markers were polymorphic in S. sutor and were further assayed in S. luridus, S. rivulatus, and S. spinus, of which respectively 9, 10 and 8 were polymorphic. Statistical power analysis and an analysis of molecular variance showed that subtle genetic differentiation can be detected using these markers, highlighting their utility for the study of genetic diversity and population genetic structure in rabbitfishes.     

Food choice in Siganus fuscescens: influence of macrophyte nutrient content and availability

Using multiple‐choice feeding experiments, the selection of six species of macrophytes by the herbivorous rabbitfish Siganus fuscescens was examined. The rabbitfish showed distinct food choice in the laboratory; however, selection of macrophytes by S. fuscescens was not related to their absolute nutrient content (nitrogen, carbon, energy and ash free dry mass). Nutrient assimilation estimates showed that the macrophytes which were most preferred were those that S. fuscescens assimilated best. In S. fuscescens , the macrophytes that were preferred passed through the gut significantly faster than the less preferred species. Gut transit time had a significant effect on the absolute value of a food item in terms of net nutrient gain per unit time. This study showed that food value could be inferred from the absolute nutrient content of the macrophytes. Thus both the ability to assimilate nutrients as well as the absolute nutrient content of macrophytes must be quantified when assessing food value.     

Negative Association Between Conspicuous Visual Display and Chemosensory Behavior in Two Phrynosomatid Lizards

Communication in one sensory modality can influence communication in others. Lizards in many phrynosomatid species use primarily visual but also chemical signals. The striped plateau lizard, Sceloporus virgatus , exhibits evolutionary loss of a male color signal that in many species is used during aggressive postural displays towards conspecific males. These patches are used similarly in Urosaurus , the sister genus to Sceloporus . We compared a species in which a color signal has been lost, S. virgatus , to a species retaining the ancestral character state of blue abdominal display patches, Urosaurus ornatus , the common tree lizard, to test two hypotheses: (i) conspicuous postural displays that reveal the abdominal patch location are used less in the species that has lost the color patches; and (ii) potential chemical signals are used more in the species with the color loss. We analyzed both visual display behavior (push-up, full-show) and chemosensory behavior (tongue flick and nose tap) of male lizards following their introduction to a resident conspecific male in his home terrarium. Resident males performed very low rates of all behaviors, but intruders exhibited sufficient behavior for analysis.
Supporting the first hypothesis, S. virgatus were less likely than U. ornatus to perform full-show, a display that reveals abdominal skin. Male S. virgatus were more likely to perform push-up than U. ornatus , although S. virgatus performed push-up infrequently. Push-up is a postural display that does not specifically reveal the abdominal patch location. Supporting the second hypothesis, S . virgatus were more likely to perform chemosensory behaviors and performed them at a greater rate than did U. ornatus . Work comparing more closely related species is warranted to determine whether a negative association between conspicuous visual displays and chemosensory behavior is a general pattern.     

A revision of the akysid catfish genus Acrochordonichthys Bleeker

The taxonomy of the South-east Asian catfish genus Acrochordonichthys (Akysidae) is revised.The shapes of the snout, humeral process and adipose fins are diagnostic species characters. Only four out of 11 species and one sub-species described prior to this study are considered valid, namely A. rugosus (Bleeker, 1847), A. ischnosoma Bleeker, 1858, A. chamaeleon (Vaillant, 1902), and A. pachyderma Vaillant, 1902. An additional five new species ( A. guttatus, A. septentrionalis, A. mahakamensis, A. strigosus and A. falcifer ) are described.