Interpretation of the toothplates of chimaeroid fishes

It has been argued that the toothplates of chimaeroid fishes exhibit a mode of growth that is fundamentally different from that of other chondrichthyans. Chimaeroid toothplates are supposed to be statodont, growing from the basal surface, whereas other chondrichthyan dentitions are lyodont, growing from the lingual towards the labial surface of the jaw. That idea is shown to be mistaken, because chimaeroid toothplates grow from the lingual surface, like other chondrichthyan dentitions. The mistake resulted from confusion about the nomenclature of toothplate surfaces, and on the choice of Chimaera as a Recent model. Callorhynchus is a more appropriate model, since it is shown to exhibit a primitive toothplate conformation, with the labial and symphysial margins of the occlusal surface bounded by a descending lamina which is applied to the margin of the jaw cartilage and grows basally throughout life. The descending lamina is well developed in toothplates of the extinct chimaeroid genera Ischyodus, Pachymylus and Brachymylus, but is much reduced in all Recent genera other than Callorhynchus. A basally-growing descending lamina also bounds the labial and symphysial margins of the principal toothplates in the Mesozoic myriacanthoids and Squaloraja. The toothplates of the Palaeozoic ‘cochliodonts' are reviewed; amongst them, the chondrenchelyids are the only forms with a basally growing descending lamina. So far as the dentition and its mode of growth arc concerned, the closest Palaeozoic relatives of chimaeroids seem to be the chondrenchelyids. The only statodont (basally growing) toothplates found in the course of this work are those of ptyctodont placoderms, which are therefore unlikely to be related to any chondrichthyans. Statodonty in its original sense (failure to shed teeth) is shown to be widespread and possibly primitive in chondrichthyans. Cochliodont and chimaeroid toothplates grow in a logarithmic spiral. Toothplates of primitive chimaeroid type, with basally growing marginal descending laminae, can develop only when the constant angle of the spiral is small (less than about 35°), and when the oral surface of the jaw grows to the same logarithmic spiral.     

A NEW RECONSTRUCTION OF ONYCHOSELACHE TRAQUAIRI, COMMENTS ON EARLY CHONDRICHTHYAN PECTORAL GIRDLES AND HYBODONTIFORM PHYLOGENY

Abstract:  A new, third, specimen of Onychoselache traquairi from the Viséan (Holkerian) of Scotland allows a significant revision of the anatomy of this stem-group elasmobranch. This first report of material from the Mumbie Quarry exposure of the Glencartholm fish beds presents a new reconstruction of Onychoselache showing broad-based cephalic and nuchal spines, and exceptionally large pectoral fins. Details of the jaws, braincase and postcranial skeleton demonstrate that Onychoselache is a well-characterized member of the Hybodontiformes. Comparisons of the pectoral skeleton with other early chondrichthyan examples, including new material of Tristychius arcuatus and Plesioselachus macracanthus , highlight a range of early chondrichthyan conditions that are incorporated into a revised hybodontiform phylogeny. Close resemblance between Onychoselache and Mesozoic and late Palaeozoic hybodonts implies that these clades diverged within the Carboniferous and Permian. Major differences between Onychoselache and the coeval Tristychius (a modified reconstruction of which is included) indicate that the Neoselachii-Hybodontiformes split is probably Late Devonian, consistent with records of isolated teeth. The pectoral fins of Onychoselache , while unique among Palaeozoic forms, resemble those of Recent bamboo and epaulette sharks (Orectolobiformes). The functional corollary of this convergence is that Onychoselache represents an instance of a non-tetrapod early vertebrate with a near-walking gait.     

Ateleaspis tessellata Traquair, a non-cornuate cephalaspid from the Upper Silurian of Scotland

Ateleaspis tessellata Traquair, a non-cornuate cephalaspid from the U. Silurian of Scotland, is re-examined on the evidence of new material from the original localities. The species is found to be less 'primitive' than was previously thought in that the pectoral fins are separated from the trunk posteriorly by a distinct sinus and the two dorsal fins are developed essentially as in Aceraspis robustus Kiaer. The ventral visceral exoskeleton is described for the first time. Ateleaspis and Aceraspis are so close in so many respects that retention of separate genera is unnecessary; Aceraspis must be suppressed since Ateleaspis has priority. Revised diagnoses of the genus Ateleaspis and its two species, A. tessellata Traquair and A. robustus (Kiaer), are given and their relationships with other non-cornuate cephalaspids discussed.     

Annotated checklist of the living sharks,batoids and chimaeras (Chondrichthyes) of the world,with a focus on biogeographical diversity

An annotated checklist of the chondrichthyan fishes (sharks, batoids and chimaeras) of the world is presented. As of 7 November 2015, the number of species totals 1188, comprising 16 orders, 61 families and 199 genera. The checklist includes nine orders, 34 families, 105 genera and 509 species of sharks; six orders, 24 families, 88 genera and 630 species of batoids (skates and rays); one order, three families, six genera and 49 species of holocephalans (chimaeras). The most speciose shark orders are the Carcharhiniformes with 284 species, followed by the Squaliformes with 119. The most species‐rich batoid orders are the Rajiformes with 285 species and the Myliobatiformes with 210. This checklist represents the first global checklist of chondrichthyans to include information on maximum size, geographic and depth distributions, as well as comments on taxonomically problematic species and recent and regularly overlooked synonymizations. Furthermore, a detailed analysis of the biogeographical diversity of the species across 10 major areas of occurrence is given, including updated figures for previously published hotspots of chondrichthyan biodiversity, providing the detailed numbers of chondrichthyan species per major area, and revealing centres of distribution for several taxa     

THE BRAINCASE and JAWS OF CLADODUS FROM THE LOWER CARBONIFEROUS OF SCOTLAND

Abstract:  The jaws and an allegedly associated orbitotemporal region of a shark braincase are described from the Lower Carboniferous (Upper Viséan, Brigantian Stage, Clackmannan Group, Lower Limestone Formation) of Lugton, Ayrshire, Scotland. The braincase specimen is important because it is associated with a tooth of Cladodus elegans Newberry and Worthen, 1870, a form considered to be close to the type species Cladodus mirabilis Agassiz, 1843. An occipital fragment, a basicranium and a fragment of palatoquadrate from the same locality are also described. All the material probably represents the same species, and it is even possible that some of the material came from a single individual. The braincase resembles those of Cladodoide s and Tamiobatis , especially in the proportions of its otic region, the presence of an extensive dorsum sellae, and the arrangement of canals for major nerves and blood vessels. The internal structure of the occipital region is remarkably like that found in Tamiobatis braincases in having a prominent subnotochordal septum and paired subnotochordal and paroccipital chambers. Cladodus is no longer regarded as a nomen dubium , since only a few species founded on isolated teeth are now retained in the re-diagnosed genus, and one of these ( C. elegans ) is now associated with skeletal remains. The best systematic placement for Cladodus sensu stricto is among the Ctenacanthiformes or even the Ctenacanthidae. Cladodus may be a synonym of Ctenacanthus , but this cannot be confirmed with the available material.     

The fish assemblage from the Pennsylvanian Buckhorn Asphalt Quarry Lagerstätte (Oklahoma,USA)

A diverse assemblage of fishes (isolated teeth and scales) is reported from the Middle to Upper Pennsylvanian Buckhorn Asphalt Quarry Lagerstätte in Oklahoma, USA. The assemblage includes chondrichthyans such as the bransonelliform Bransonella lingulata, the xenacanthiform Xenacanthus, the symmoriiform Stethacanthus, ctenacanthiforms, an polyacrodontid euselachian, anachronistid neoselachians (Cooleyella amazonensis and C. sp.) and an iniopterygian paraselachian cf. Sibyrhynchidae. Moreover, the assemblage encompasses remains of acanthodians and various actinopterygians and a single specimen of an osteolepiform sarcopterygian. Most of the taxa are cosmopolitan during the Late Palaeozoic. The occurrence of bransonelliform and xenacanthiform species at the same locality is very rare in the Carboniferous. The assemblage yields the first Carboniferous occurrences of a polyacrodontid hybodontoid and an actinopterygian belonging to the Acropholidae. Bransonella lingulata from the Desmoinesian/Moscovian of the Buckhorn Asphalt Quarry in Oklahoma represents the youngest occurrence of this species.     

Updated taxonomic list and conservation status of chondrichthyans from the exclusive economic zone of Venezuela,with first generic and specific records

Using the last taxonomic review of chondrichthyans of the world, we selected the species distributed in the north-western Atlantic Ocean (NWA) and compared it with the available published literature related to the class Chondrichthyes in the Venezuelan exclusive economic zone. We also revised information from worldwide databases such as: FAO (NWA-31 area), GBIF, iSpecies, IUCN and OBIS, as well as available museum collection databases. The taxonomic validity was checked using the Catalogue of Fishes of the California Academy of Sciences and recent references. The past published Venezuelan lists of chondrichthyans combined included nine orders, 30 families and 108 species. The updated list with 12 orders, 36 families and 122 species increased by three new orders, six families, three shark genera, nine shark species (one replacing another species), one chimaera genus, two chimaera species, three batoid genera and six batoid species (two replacing other species). Four holotype specimens (two sharks and two rays) are deposited in Venezuelan Museums. Most of the species have an IUCN conservation status, including four species catalogued as Critically Endangered, six as Endangered and 18 species as Vulnerable. Deep-sea fisheries, scientific exploration and taxonomic/genetic revisions might add future increments to the Venezuelan chondrichthyan list.     

Chondrichthyan tooth enameloid: past,present, and future

Enameloid is a hard mineralized tissue covering chondrichthyan and actinopterygian teeth. Over the past 40 years, it has been extensively studied in various extinct and extant sharks, leading to the broad use of microstructural characters to differentiate between hybodont and neoselachian teeth. However, the chondrichthyan taxic diversity is disproportionately high compared to the number of taxa explored for enameloid microstructure, and the generalization of these few observations to the whole group is problematic. Indeed, many other groups, in particular modern rays and skates, have been completely overlooked, and almost nothing is known about their tooth histology. Furthermore, the recent discovery of typical neoselachian character in cladodontomorph sharks teeth clearly indicates that we have had an over‐simplified perception of the chondrichthyan enameloid distribution, which put into question the previously proposed evolutive scenarios dealing whith this tissue. We propose a brief historical overview of the study and understanding of chondrichthyan enameloid diversity and briefly discuss preparation issues encountered when dealing with the study of chondrichthyan hypermineralized tissues. Then, the variation of enameloid microstructures encountered in ctenacanthiforms, hybodonts, selachimorphs, and batomorphs is explored, summarized, and discussed. Although the full extent of the diversity and variability of the enameloid microstructure in many of these groups and others remains to be fully determined, we are able to show that most possess a much more complex enameloid microstructure than expected, and propose a revised and more fitting chondrichthyan enameloid terminology, based on the recognition of two main units: an external Single Crystallite Enameloid (SCE) and an internal Bundled Crystallite Enameloid (BCE). Our study reveals new insights in the understanding of character distribution among batomorphs and sets a framework for tackling global chondrichthyan tooth enameloid evolution. © 2015 The Linnean Society of London     

AMMONOID SHELL STRUCTURES OF PRIMARY ORGANIC COMPOSITION

Abstract:  Palaeozoic and Mesozoic cephalopod conchs occasionally reveal dark organic coatings at the aperture. A number of these coatings, including still unrecorded examples, are described, figured and interpreted herein. On the basis of elemental analysis, actualistic comparison and a comparison with Triassic bivalves, some of these coatings are shown to consist of apatite and primarily probably of conchiolin (and also probably melanin). In several Mesozoic ammonoid genera such as Paranannites , Psiloceras , Lytoceras , Phylloceras , Harpoceras and Chondroceras , some of these coatings (recorded herein for most of these taxa for the first time) are interpreted as a structure similar to the black band, which was previously known only from Recent Allonautilus and Nautilus . In contrast to these nautilid genera, however, the organic material of some Mesozoic ammonoids was not deposited on the inside of the shell but externally, albeit positioned at the terminal aperture as in Recent nautilids. Some ammonoids of Carboniferous and Triassic age show several such bands at more or less regular angular distances on the ultimate whorls and at the aperture, e.g. Nomismoceras , Gatherites , Owenites , Paranannites , Juvenites and Melagathiceratidae gen. et sp. nov. Triassic material from Oman shows that the black coating was probably secreted from the inside, because the position of this organic deposit changes from interior to exterior in an anterior direction (i.e. adaperturally). This structure has previously been referred to as a 'false colour pattern' and is here interpreted as having been formed at an interim aperture or megastria ('alter Mundrand'). All structures discussed in the paper are considered to have been secreted by a single organ and to have been initiated by some form of stress or adverse conditions. Thus, certain environmental parameters and growth anomalies appear to have influenced their formation.     

The absence of sharks from abyssal regions of the world's oceans

The oceanic abyss (depths greater than 3000 m), one of the largest environments on the planet, is characterized by absence of solar light, high pressures and remoteness from surface food supply necessitating special molecular, physiological, behavioural and ecological adaptations of organisms that live there. Sampling by trawl, baited hooks and cameras we show that the Chondrichthyes (sharks, rays and chimaeras) are absent from, or very rare in this region. Analysis of a global data set shows a trend of rapid disappearance of chondrichthyan species with depth when compared with bony fishes. Sharks, apparently well adapted to life at high pressures are conspicuous on slopes down to 2000 m including scavenging at food falls such as dead whales. We propose that they are excluded from the abyss by high-energy demand, including an oil-rich liver for buoyancy, which cannot be sustained in extreme oligotrophic conditions. Sharks are apparently confined to ca 30% of the total ocean and distribution of many species is fragmented around sea mounts, ocean ridges and ocean margins. All populations are therefore within reach of human fisheries, and there is no hidden reserve of chondrichthyan biomass or biodiversity in the deep sea. Sharks may be more vulnerable to over-exploitation than previously thought.     

Early Palaeozoic diversification of chitons (Polyplacophora, Mollusca) based on new data from the Silurian of Gotland, Sweden

Isolated, well-preserved silicified sclerites of an unusually diverse Silurian paleoloricate assemblage from Gotland preserve morphological features that are important in interpreting palaeobiology. The typically granular dorsal ornament is comparable with Recent chitons, and is hence possibly linked functionally with sensory aesthetes. Ventral structures particularly in thickened shells indicate major muscle attachment sites sub-apically or, equivalently, beneath the rim of the apical area, and also marginally. In early chitons such as Cambrian Matthevia, deep ventral cavities represent comparable sub-apical sites. Three Gotland genera with an unusual, holoperipheral shell growth style apparently represent plated aplacophorans (cf. Acaenoplax), which coexisted with paleoloricate chitons in shallow inshore carbonate shelf environments. Sclerite features of all the Gotland genera are discussed together since they share most characteristics. The new family Heloplacidae includes those genera and Acaenoplax, which in a preliminary cladistic analysis form a sister group to other Lower Palaeozoic paleoloricates. Multiplated skeletons in paleoloricates and this group of aplacophorans represent parallel evolution of dorsal armour, which in chitons resulted in overlapping, articulating sclerites. The diversity of the mid-Silurian Gotland assemblage is examined against early evolutionary diversification of polyplacophorans, aplacophorans, and in relation to the overall record of Palaeozoic paleoloricate and neoloricate chitons. Peaks in diversity in early Ordovician, mid-Silurian and early Carboniferous times correspond to periods with widespread development of low latitude carbonate shelves. Neoloricates, apparently with an additional shell layer that contributed articulatory plates, appeared in the Devonian from where the fossil record remains poorly known.     

Latitudinal diversity gradients for brachiopod genera during late Palaeozoic time: links between climate, biogeography and evolutionary rates

Aim The latitudinal diversity gradient, in which taxonomic richness is greatest at low latitudes and declines towards the poles, is a pervasive feature of the biota through geological time. This study utilizes fossil data to examine how the latitudinal diversity gradient and associated spatial patterns covaried through the major climate shifts at the onset and end of the late Palaeozoic ice age. Location Data were acquired from fossil localities from around the world. Methods Latitudinal patterns of diversity, mean geographical range size and macroevolutionary rates were constructed from a literature‐derived data base of occurrences of fossil brachiopod genera in space and time. The literature search resulted in a total of 18,596 occurrences for 991 genera from 2320 localities. Results Climate changes associated with the onset of the late Palaeozoic ice age (c. 327 Ma) altered the biogeographical structure of the brachiopod fauna by the preferential elimination of narrowly distributed, largely tropical genera when glaciation began. Because the oceans were left populated primarily with widespread genera, the slope of the diversity gradient became gentle at this time, and the gradient of average latitudinal range size weakened. In addition, because narrowly distributed genera had intrinsically high rates of origination and extinction, the gradients of both of these macroevolutionary rates were also reduced. These patterns were reversed when the ice age climate abated in early Permian time (c. 290 Ma): narrowly distributed genera rediversified at low latitudes, restoring steep gradients of diversity, average latitudinal range size and macroevolutionary rates. Main conclusions During late Palaeozoic time, these latitudinal gradients for brachiopods may have been linked by the increased magnitude of seasonality during the late Palaeozoic ice age. Pronounced seasonality would have prevented the existence of genera with narrow latitudinal ranges. These results for the late Palaeozoic ice age suggest a climatic basis for the present‐day latitudinal diversity gradient.     

梵净山自然保护区蕨类植物区系

梵净山属武陵山脉主峰,位于贵州省东北部,东经108°45′55″—108°48′30″,北纬27°49′50″—28°1′30″,海拔500—2493.4米,面积约600平方公里,其蕨类植物区系组成共39科83属182种。在区系结构}二表现出下列几个一般的特征:(1)种系密度大,成分多样1(2)温带性质,是泛北极区系的一部分,与热带地区有一定的亲缘联系;(3)特有现象明显;(4)是东南亚成分(含中国一喜马拉雅和中国—日本成分)分布中心的一部分:是中国—喜马拉雅和中国一日本成分交汇中心的一部分;(5)属内种系贫乏;(6)与华东地区的关系密切。     

Organisation of the Hb 1 genes of the Antarctic skate Bathyraja eatonii: new insights into the evolution of globin genes

An extensive investigation of the organisation of globin genes has greatly contributed to the understanding of universal mechanisms of gene evolution and expression. Cartilaginous fish are the first organisms that have evolved the tetrameric form of hemoglobin (Hb). So far, there has been absolute lack of data about globin genes in chondrichthyans. Bathyraja is the dominant rajid south of 60 degrees S. In the framework of the investigations on globin genes of Antarctic red-blooded and Hb-less fish we obtained the cloning of the alpha- and beta-globin cDNAs of the main Hb (Hb 1) of the skate Bathyraja eatonii. Then, a genomic fragment of 6.2 kb was isolated where the Hb 1 alpha and beta genes are linked in a tail-to-head (3' to 5') orientation. The beta-globin gene promoter region and the chromosomal organisation of the Hb 1 genes of B. eatonii have been compared to their homologues in other vertebrates. The finding of a tail-to-head linkage of the Hb 1 alpha- and beta-globin genes in B. eatonii is the first characterisation of the organisation of globin genes in chondrichthyes; such finding offers a novel contribution to the understanding of the evolution of this class of genes. Moreover, the characterisation of chondrichthyan genes is very important for gaining insight into the ancestral state of vertebrate genomes.     

On the diversity of sperm histones in the vertebrates: IV. Cytochemical and amino acid analysis in Anura

The variability of sperm histones in frogs has been studied by cytochemical and amino acid analyses. Cytochemically, Rana sperm proteins fall into Bloch's ('69, '76) type 4 somatic-like histone category, while Xenopus and Bufo have type 3 intermediate sperm histones. Extractability in 5% trichloroacetic acid (TCA) at different temperatures splits this type 3 category into two groups: type 3B intermediate sperm histones of Bufo are extractable at 85-90 degrees C, while Xenopus intermediate type 3A sperm histones require temperatures of 95-100 degrees C for extraction. Amino acid analysis confirms that Rana sperm histones are of the nucleosomal type, with a testis-specific, very lysine-rich H1 histone. The sperm protein in Bufo is richer in arginine than the proteins in Xenopus. Both of these genera contain lysine and histidine as well as arginine in their sperm proteins. These results confirm earlier electrophoretic data (Kasinsky et al., '78) and indicate that sperm histones in the order Anura can vary markedly between different genera.     

Battenizyga, a new Early Triassic gastropod genus with a discussion of the caenogastropod evolution at the Permian/Triassic boundary

Battenizyga, a new Early Triassic gastropod genus from the Moenkopi Formation of Utah, is described and the speciesAnoptychia eotriassica Batten & Stokes, 1986 is placed in it. The new genus has an axially ribbed planktonic larval shell and a teleoconch with an angulated periphery. This character combination is unknown from the Palaeozoic. Therefore,Battenizyga represents additional evidence that recovery from the end-Permian mass extinction was connected with a faunal turnover. Additionally, the extinction of diverse Palaeozoic groups of the Caenogastropoda in the Permian (e.g., the Pseudozygopleuridae) suggest a turnover. All caenogastropod genera that hold Early Triassic species, have post-Palaeozoic type species and most were not reported from the Palaeozoic. This corroborates the view that there was an intense faunal turnover within the Caenogastropoda.Battenizyga is probably a caenogastropod that is closely related to the superfamily Zygopleuroidea which is abundant in the late Palaeozoic and early Mesozoic.      

A synoptic review of the Eocene (Ypresian) cartilaginous fishes (Chondrichthyes: Holocephali,Elasmobranchii) of the Bolca Konservat-Lagerstätte,Italy

Here, we review and discuss the records and taxonomy of the Ypresian (Eocene) chondrichthyans from the famous Bolca Konservat-Lagerstätte in northeastern Italy. Despite the outstanding diversity and the numerous studies focusing on the actinopterygian faunas from Pesciara and Monte Postale, the current knowledge about the systematics, taxonomy and phylogenetic relationships of the cartilaginous fishes from these Eocene sites remains elusive and largely inadequate. The celebrated Eocene Bolca Lagerstätte has yielded several exquisitely preserved articulated remains of chondrichthyan fishes in which delicate structures and soft tissues are preserved, as well as isolated teeth. The cartilaginous fish assemblage of Bolca comprises at least 17 species-level taxa belonging to 10 families in 6 orders, including selachians (Carcharhiniformes, Lamniformes), batoids (Torpediniformes, Myliobatiformes, Rajiformes) and holocephalans (Chimaeriformes). The occurrence of holocephalans represented by an isolated fin-spine of the chimeroid Ischyodus in the Bolca assemblage is reported here for the first time and represents the first record of chimeroids in the Eocene of Italy and also southern Europe. The Bolca chondrichthyan assemblage is remarkably different from those of other contemporaneous Boreal or Tethyan deposits, suggesting that its taxonomic composition is largely influenced by the palaeoenvironmental context. However, this synoptic review also highlights the importance of detailed revisions of all chondrichthyan remains from the Bolca Konservat-Lagerstätten.     

不同放线菌属的化学与分子分类

随着科学的发展与新技术在分类学中不断地应用,放线菌分类学已从经典的形态分类转向化学分类(细胞壁化学组份,磷酸类脂,枝菌酸及甲基萘醌等).现在有些国家又开展了分子分类.本实验室自80年代始开展了放线菌化学分类,建立了上述化学指征的分析方法.自90年代起,又开展了分子分类,DNA-DNA杂交、23S rRNA寡核甘酸序列分析.近来,许多人用16S rRNA部分序列区分微生物不同的基因种.作者选用了23S rRNA部分序列区分放线菌的不同属种.现将研究结果简报如下:1 材料和方法1.1菌种菌株10,13,23,C_(43),350,41,53,4650及N分离自云南省土壤中.C_(51)及3306来自日本微生物菌种保藏中心.     

锁核酸研究进展

锁核酸(locked nucleic acid,LNA)是一种新型的寡核酸衍生物,结构中β-D-呋喃核糖的2’-O,4’-C位通过缩水作用形成环形的氧亚甲基桥、硫亚甲基桥或胺亚甲基桥,呋喃糖的结构锁定在C3’内型的N构型,形成了刚性的缩合结构。LNA作为一种新的反义核酸,具有与DNA／RNA强大的杂交亲和力、反义活性、抗核酸酶能力、水溶性好及体内无毒性等优点。LNA在基因诊断和基因治疗上有很多优势,如：单链核酸的多态性基因分型、LNA寡聚体具有高效抑制端粒酶活性及LNA修饰的DNA核酶(LNAzymes)高效清除高级结构的RNA等,有良好的应用研究前景。     

Inhibition of S-adenosylhomocysteine hydrolase by acyclic sugar adenosine analogue D-eritadenine. Crystal structure of S-adenosylhomocysteine hydrolase complexed with D-eritadenine

D-eritadenine (DEA) is a potent inhibitor (IC(50) = 7 nm) of S-adenosyl-l-homocysteine hydrolase (AdoHcyase). Unlike cyclic sugar Ado analogue inhibitors, including mechanism-based inhibitors, DEA is an acyclic sugar Ado analogue, and the C2' and C3' have opposite chirality to those of the cyclic sugar Ado inhibitors. Crystal structures of DEA alone and in complex with AdoHcyase have been determined to elucidate the DEA binding scheme to AdoHcyase. The DEA-complexed structure has been analyzed by comparing it with two structures of AdoHcyase complexed with cyclic sugar Ado analogues. The DEA-complexed structure has a closed conformation, and the DEA is located near the bound NAD(+). However, a UV absorption measurement shows that DEA is not oxidized by the bound NAD(+), indicating that the open-closed conformational change of AdoHcyase is due to the substrate/inhibitor binding, not the oxidation state of the bound NAD. The adenine ring of DEA is recognized by four essential hydrogen bonds as observed in the cyclic sugar Ado complexes. The hydrogen bond network around the acyclic sugar moiety indicates that DEA is more tightly connected to the protein than the cyclic sugar Ado analogues. The C3'-H of DEA is pointed toward C4 of the bound NAD(+) (C3'...C4 = 3.7 A), suggesting some interaction between DEA and NAD(+). By placing DEA into the active site of the open structure, the major forces to stabilize the closed conformation of AdoHcyase are identified as the hydrogen bonds between the backbone of His-352 and the adenine ring, and the C3'-H...C4 interaction. DEA has been believed to be an inactivator of AdoHcyase, but this study indicates that DEA is a reversible inhibitor. On the basis of the complexed structure, selective inhibitors of AdoHcyase have been designed.