Hidden diversity uncovered in Hygrophorus sect. Aurei (Hygrophoraceae), including the Mediterranean H. meridionalis and the North American H. boyeri, spp. nov.

For many years, the binomial Hygrophorus hypothejus was widely applied to collections from various geographical regions in different continents, assuming a circum-boreal and circum-mediterranean distribution for this species. This hypothesis, however, had never been put to the test. To assess the diversity and species-limits within this complex of yellow-coloured waxcaps, a phylogenetic, morphological and taxonomical investigation into Hygrophorus sect. Aurei and similar species in sect. Olivaceoumbrini was carried out, including material of pan-European origin, as well as the east and west coasts of North America. Following sequencing of the ITS rDNA locus, nine lineages are confirmed in sect. Aurei, most of them highly continentalised. Of these, two are new to science, introduced here as Hygrophorus boyeri sp. nov., from Pinus banksiana and P. rigida forests in eastern North America and from P. muricata and P. contorta forests in western North America, and Hygrophorus meridionalis sp. nov., from Pinus brutia and Pinus halepensis forests in the island of Cyprus and mainland Greece. H. hypothejus is lectotypified and epitypified, and here resolved as a strictly European species, with the old forgotten taxon Hygrophorus siccipes revived as its North American vicariant. The placement of Hygrophorus fuligineus in sect. Aurei is phylogenetically confirmed and detailed comparisons between morphologically similar and phylogenetically affiliated taxa in sect. Aurei and sect. Olivaceoumbrini are provided. The chronic confusion associated with Hygrophorus fuscoalbus, a highly controversial taxon described from Germany nearly two centuries ago and variously interpreted since, is discussed, concluding that this name is too ambiguous to be applied to any currently recognized species.     

Functional phosphines. Part XIV. Cationic (P,N)2-coordinated hydrides of iridium(III): catalysts for CO hydrogenation or transfer hydrogenation?

Treatment of trans-[IrCl(CO)(PPh₃)₂] with Ph₂PCH₂CH₂NH₂ in refluxing para-xylene gave (OC-6-43)-[Ir(H)(Cl)(Ph₂PCH₂CH₂NH₂)₂]Cl (1) which interacted with K[BH(s-Bu₃)] to produce a mixture of (OC-6-22)-[IrH₂(Ph₂PCH₂CH₂NH₂)₂]Cl (2a) and (OC-6-32)-[Ir(H)(Cl)(Ph₂PCH₂CH₂NH₂)₂]Cl (2b). The trans-dihydride 2a was isolated in pure form from the reaction between 1 and KOH/i-PrOH. Different from its isoelectronic (P,N)₂-coordinated Ru^II analogues, the cationic chloro hydrido complex 1 does not act as a catalyst for the direct hydrogenation of acetophenone by molecular H₂, if activated by strong alkoxide base, but rather catalyzes the transfer hydrogenation of the CO bond with methanol or isopropanol as proton/hydride sources. Dihydrido complex 2a is ascribed the role of the actual catalyst as it supports the transfer hydrogenation reaction even in the absence of base. The crystal structure of the addition compound 1 · 2EtOH has been determined.     

Phylogeny of the Rhizobium–Allorhizobium–Agrobacterium clade supports the delineation of Neorhizobium gen. nov.

The genera Agrobacterium, Allorhizobium, and Rhizobium belong to the family Rhizobiaceae. However, the placement of a phytopathogenic group of bacteria, the genus Agrobacterium, among the nitrogen-fixing bacteria and the unclear position of Rhizobium galegae have caused controversy in previous taxonomic studies. To resolve uncertainties in the taxonomy and nomenclature within this family, the phylogenetic relationships of generic members of Rhizobiaceae were studied, but with particular emphasis on the taxa included in Agrobacterium and the “R. galegae complex” (R. galegae and related taxa), using multilocus sequence analysis (MLSA) of six protein-coding housekeeping genes among 114 rhizobial and agrobacterial taxa. The results showed that R. galegae, R. vignae, R. huautlense, and R. alkalisoli formed a separate clade that clearly represented a new genus, for which the name Neorhizobium is proposed. Agrobacterium was shown to represent a separate cluster of mainly pathogenic taxa of the family Rhizobiaceae. A. vitis grouped with Allorhizobium, distinct from Agrobacterium, and should be reclassified as Allorhizobium vitis, whereas Rhizobium rhizogenes was considered to be the proper name for former Agrobacterium rhizogenes. This phylogenetic study further indicated that the taxonomic status of several taxa could be resolved by the creation of more novel genera.     

Cordaites schatzlarensis sp. nov. and Samaropsis newberryi (Andrews) Seward from the Westphalian (Carboniferous) of the ?aclé? area (Czech Republic)

The monotonous cordaitalean leaves are usually difficult to determine as leaf shape and venation can be similar in many species. Therefore cuticular analysis is an important method for distinguishing cordaitalean leaves. Pennsylvanian Cordaites schatzlarensis nov. sp. comes from the ?aclé? locality in the Intrasudetic Basin, Czech Republic. It has been found in mudstone accompanying the upper coal seams No. 9 and 10 of the Jan Šverma Coals, Lampertice Member, ?aclé? Formation and are late Duckmantian in age. The leaves of Cordaites schatzlarensis are lanceolate, amphistomatic. Stomata of the adaxial epidermis are scarce, isolated, or in very short stomatal rows. In contrast, the density of stomata on the abaxial cuticle is high and stomata are arranged into single or double stomatal rows. The cuticles of C. schatzlarensis are comparable with the Chinese Upper Permian C. baodeensis Ge. Leaves can be narrow, comparable to French Bolsovian Dorycordaites zeilleri Ledran, or relatively wide. Accompanying big seeds more than 5 cm in diameter are attributed to Samaropsis newberryi (Andrews) Seward. The pith casts Artisia Sternberg were found in sandy channel fill deposits.     

An antiferromagnetically coupled trinuclear Cu(II) complex containing μ(O,O′), μ(O) carboxylates and μ(O) phenoxide bridges

The trinuclear complex [L₂Cu₃(CF₃CO₂)₄] (1) has been synthesized and its crystal structure determined. It consists of a linear arrangement of Cu(II) centers. The central copper atom is bonded to six oxygen atoms and has a tetragonally distorted octahedral geometry, while the terminal copper atoms are bonded to three oxygen and two nitrogen atoms and show a distorted square pyramidal geometry. The complex shows di-μ(O,O′) syn-syn carboxylate bridging as well as monoatomic (μ-O) bridging, along with phenolate (μ-O) oxygen bridging. Cryomagnetic investigations in the range 2-300 K revealed an antiferromagnetic spin exchange interaction with J = −95.7 cm⁻¹, based on the isotropic exchange model H_ex = −2J[S₁ · S₂ + S₂ · S₃].     

The detoxification of α-tomatine by Fusarium oxysporum f. sp. lycopersici

Fusarium oxysporum f. sp. lycopersici detoxifies α-tomatine by producing an inducible extra-cellular enzyme which cleaves the glycoalkaloid into the tetrasaccharide lycotetraose and tomatidine.     

Evolutionary relationships between Fusarium oxysporum f. sp. lycopersici and F. oxysporum f. sp. radicis-lycopersici isolates inferred from mating type, elongation factor-1α and exopolygalacturonase sequences

Fusarium oxysporum is a ubiquitous species complex of soilborne plant pathogens that comprises many different formae speciales, each characterized by a high degree of host specificity. In this study, the evolutionary relationships between different isolates of the F. oxysporum species complex have been examined, with a special emphasis on the formae speciales lycopersici and radicis-lycopersici, sharing tomato as host while causing different symptoms. Phylogenetic analyses of partial sequences of a housekeeping gene, the elongation factor-1α (EF-1α) gene, and a gene encoding a pathogenicity trait, the exopolygalacturonase (pgx4) gene, were conducted on a worldwide collection of F. oxysporum strains representing the most frequently observed vegetative compatibility groups of these formae speciales. Based on the reconstructed phylogenies, multiple evolutionary lineages were found for both formae speciales. However, different tree topologies and statistical parameters were obtained for the cladograms as several strains switched from one cluster to another depending on the locus that was used to infer the phylogeny. In addition, mating type analysis showed a mixed distribution of the MAT1-1 and MAT1-2 alleles in the F. oxysporum species complex, irrespective of the geographic origin of the tested isolates. This observation, as well as the topological conflicts that were detected between EF-1α and pgx4, are discussed in relation to the evolutionary history of the F. oxysporum species complex.     

Pseudophillipsia azzouzi nov. sp. Trilobite griffithididé Permien du Djebel Tebaga (Tunisie)

Pseudophillipsia azzouzi nov. sp., found by L. Memmi and J. David in the Dolomies superieures Series of the Djebel Tebaga, takes part of the Ps. sumatrensis-Group. Its stratigraphical position in the Kazanian-Pamirian boundary is in accordance with the global distribution of that Group. The tunisian species, characterized by its ornamentation (particularly of the pygidium), is also remarkable by its large size, twice that of the type-species.     

Quality evaluation of Semen persicae (seed of Prunus persica L. Batsch) by gas chromatography–mass spectrometry

Seeds of Prunus persica L. Batsch were collected at various times from different regions of China. The fatty acid composition of the seeds was analysed using gas chromatography-mass spectrometry (GC-MS). The aim was to evaluate whether genetic and environmental factors influenced the chemical profile of fatty acids in Semen persicae. Saturated and unsaturated fatty acids were present at 4.8-8.7% and 90.7-94.8% of total fatty acids, respectively. Oleic and linoleic acids were dominant in all samples and ranged from 59.3 to 81.4% and from 11.6 to 31.0%, respectively. All samples had high levels of unsaturated fatty acids. Hierarchical clustering analysis and principal components analysis were performed to differentiate and classify the samples based on the contents of the characteristic fatty acid constituents. This study provides evidence that metabolites may reflect genetic and environmental similarities, such as management practices used in cultivars (irrigation, fertilization and sanitary treatments), and evidence of the variability of genetic make up and local environmental conditions in samples grown in the wild.     

A Fusarium solani endophyte vs fungicides: Compatibility in a Fusarium oxysporum f.sp. radicis-lycopersici – tomato pathosystem

The potential of FsK, a non-pathogenic endophytic Fusarium solani strain, to be utilized as a biocontrol agent in combination with nine selected fungicides registered in tomato crops in Greece was evaluated. In vitro fungitoxicity tests revealed that FsK was insensitive to doses exceeding 100 μg/mL of thiophanate-methyl, fenhexamid, cyprodinil, boscalid and mancozeb. On the contrary, prochloraz, fludioxonil, pyraclostrobin and difenoconazole were most toxic to FsK. None of the later fungicides affected conidial production in an adverse way. Drenching of tomato plants with the above fungicides at recommended doses did not significantly affect colonization of tomato roots by FsK as revealed by in vitro isolation and Real Time PCR quantification. The disease suppressive ability of FsK against Fusarium oxysporum f.sp.radicis lycopersici (FORL) was not adversely affected by the post-inoculation application of commercial formulations of fludioxonil (Switch) and pyraclostrobin (Comet) at the recommended doses. Even more, the Comet–FsK combination resulted in enhanced disease suppression compared to either of the two treatments applied individually. In conclusion, not only biocontrol agent FsK is suitable for use in tomato integrated disease management programs that include all tested fungicides but also, some FsK –fungicide combinations can have additive effect against FORL disease incidence.     

Effects of storage conditions on sprouting of microtubers of yam (Dioscorea cayenensis–D. rotundata complex)

The control of field tuber dormancy in the yam (Dioscorea cayenensis–D. rotundata complex) is poorly understood. Although studies have examined single environmental factors and chemical treatments that might prolong tuber dormancy and storage, only a few were focused on further tuber sprouting. The present study concerns microtubers obtained by in vitro culture. When microtubers were harvested (after 9 months of culture) and directly transferred on a new medium without hormones, the tubers rapidly sprouted in in vitro conditions. No dormancy was observed in this case. Harvested microtubers were also stored dry in jars in sterile conditions during 2 to 18 weeks before in vitro sprouting. In this case, microtubers stored during 18 weeks sprouted more rapidly than those stored 8 weeks. A constant “dormancy-like period” (storage duration + sprouting delay) was observed, between 20 and 28 weeks respectively for the more rapid and the slower microtubers. The size of the tubers used for the storage had great influence on further sprouting. The larger they were, the better they sprouted. Light during storage had no effect on the sprouting delay while a temperature of 25 °C permit a quicker sprouting than 18 °C. The medium used to obtain microtubers could also have an effect on sprouting rate.     

Seed rain and seed bank of Chinese yew (Taxus chinensis var. mairei) population in Tianmu Mountain☆

Seed rain and seed bank of a Chinese yew (Taxus chinensis var. mairei) population in Tianmu Mountain were researched in 2008 and 2009. The seed rain lasted from 16th–23th of October to 5th–14th of December, and the heaviest seed falling period was from 2nd to18th of November. The intensity of seed rain showed a great inter-annual variation, with a good harvest in 2008. The fallen seeds were composed of 49.9% proportion of immature seed, 33.8% proportion of chewed seed and 16.3% proportion of mature seed. The analysis on the soil seed bank under mother forest showed that the number of intact seeds was 122.75 ± 108.08 grain/m² in October, 279.25 ± 210.73 grain/m² in December 2008, and 166.5 ± 165.34 grain/m² in October, 322.5 ± 275.73 grain/m² in December 2009. The increased number of seed was 156.5 ± 222.723 grain/m² in 2008 and 156 ± 275grain/m² in 2009, which showed a significant variation. Large number of intact seeds added into soil seed bank after seed rain each year. The number of intact seeds in soil seed bank decreased 112.75 ± 47.74 grain/m² from December 2008 to October 2009. Large number of intact seeds lost from seed rot and seed predation by animals. The number of seeds in soil bank under bamboo forest was much lower than that of mother tree forest, and the increased number of seeds was 0.63 ± 1.60 grain/m² in 2008 and 2.88 ± 1.86 grain/m² in 2009. The number of seedling was 0.73 ± 1.10 trees/m² in mother tree forest and 0.09 ± 0.35 trees/m² in bamboo forest. Seedling survival ratio was 0.37% in mother tree forest and 10.23% in bamboo forest. The micro-habitat in bamboo forest was fit for seed germination. Birds transported seeds to bamboo forest, and had an important effect on the regeneration of Chinese yew.     

Nucleotide diversity and minisatellite in chloroplast Asp(GUC)–Thr(GGU) region in Elymus trachycaulus complex, Elymus alaskanus and Elymus caninus

Nucleotide variation in chloroplast Asp(GUC)–Thr(GGU) intergenic region and genetic relationships among this group were examined among Elymus trachycaulus complex, Elymus alaskanus and Elymus caninus. The estimates of nucleotide diversity (π) ranged from 0.00111 for Elymus virescens to 0.03086 for E. caninus. Highest nucleotide diversity was found for E. caninus among the taxa analyzed here and followed by Elymus hyperarcticus. E. virescens accessions are genetically very uniform. Phylogenetic analysis suggested that E. caninus is paraphyletic. Elymus violaceus is genetically distinct from both E. alaskanus and E. trachycaulus. Our result indicates that Asp (GUC)–Thr (GGU) intergenic region has a high rate of evolutionary in Elymus species. Large indels detected in this region appear to have a highly rate of evolution and are thus more prone to homoplasy. We also first reported a minisatellite discovered in Asp (GUC)–Thr (GGU) region in Elymus species. The minisatellite identified here is an excellent candidate marker for studying population structures of Elymus species.     

Substrate-inhibitory analysis of the cholinesterase in the freshwater oligochaete Lumbriculus variegatus (O.F. Műller, 1773; Lumbriculidae,Oligochaeta)

The substrate-inhibitory analysis has shown that single “atypical” cholinesterase (ChE) presents in tissues of freshwater oligochaete Lumbriculus variegatus (O.F. M?ller). This enzyme differs both from “typical” acetylcholinesterase (AChE) and butyrylcholinesterase (BuChE). Specific activity of oligochaete ChE ranges 55–100 μmol ATCh g⁻¹ tissue min⁻¹ or 0.7–1 μmol ATCh mg⁻¹ protein min⁻¹, ratio of maximal rates (V) of substrate hydrolysises is 100:72:71:83 for acetyl-, propionyl-, butyryl- and acetyl-β-metylthiocholine respectively. Values of Michaelis constant (K_m) for these substrates are (1.9–2.5) × 10⁻⁴ M. The bimolecular enzyme inhibition rate constants (k_II) for organophosphorus inhibitors paraoxon, DDVP, and iso-OMPA are 10⁷, 10⁶ и 10³ mol⁻¹ | min⁻¹. ATCh and BuTCh exhibit the effect of substrate inhibition of ChE activity, while PrTCh and MeTCh do not.