Growth responses of some soil fungi to spatially heterogeneous nutrients

Abstract The natural nutritional environments of most fungi are spatially non-uniform, yet the majority of studies of fungal growth take no account of this fact. An experimental system is described which permits the growth responses of eucarpic fungi to heterogeneously distributed nutrient resources to be studied. The system comprises tesselations of agar tiles of contrasting nutrient status separated by air gaps. Growth responses in such systems of Alternaria alternata, Mucor sp., Phoma foveata , Rhizoctonia solani and Trichoderma viride are described. Generally, the growth of the fungi reflected the nutrient status of the underlying substrate. There was evidence for growth in low-nutrient tiles being greater when high-nutrient tiles were included in the tessellation. Reproductive structures tended to be formed only in low nutrient tiles with Trichoderma and Rhizoctonia and only high nutrient tiles with Alternaria . Growth responses of Rhizoctonia were strongly asymmetric in nutritionally symmetric, but heterogeneous, tesselations. The consequences of the observations for fungal growth in heterogeneous environments such as soil is discussed.     

The role of mycorrhizae and plant growth promoting rhizobacteria (PGPR) in improving crop productivity under stressful environments

Both biotic and abiotic stresses are major constrains to agricultural production. Under stress conditions, plant growth is affected by a number of factors such as hormonal and nutritional imbalance, ion toxicity, physiological disorders, susceptibility to diseases, etc. Plant growth under stress conditions may be enhanced by the application of microbial inoculation including plant growth promoting rhizobacteria (PGPR) and mycorrhizal fungi. These microbes can promote plant growth by regulating nutritional and hormonal balance, producing plant growth regulators, solubilizing nutrients and inducing resistance against plant pathogens. In addition to their interactions with plants, these microbes also show synergistic as well as antagonistic interactions with other microbes in the soil environment. These interactions may be vital for sustainable agriculture because they mainly depend on biological processes rather than on agrochemicals to maintain plant growth and development as well as proper soil health under stress conditions. A number of research articles can be deciphered from the literature, which shows the role of rhizobacteria and mycorrhizae alone and/or in combination in enhancing plant growth under stress conditions. However, in contrast, a few review papers are available which discuss the synergistic interactions between rhizobacteria and mycorrhizae for enhancing plant growth under normal (non-stress) or stressful environments. Biological interactions between PGPR and mycorrhizal fungi are believed to cause a cumulative effect on all rhizosphere components, and these interactions are also affected by environmental factors such as soil type, nutrition, moisture and temperature. The present review comprehensively discusses recent developments on the effectiveness of PGPR and mycorrhizal fungi for enhancing plant growth under stressful environments. The key mechanisms involved in plant stress tolerance and the effectiveness of microbial inoculation for enhancing plant growth under stress conditions have been discussed at length in this review. Growth promotion by single and dual inoculation of PGPR and mycorrhizal fungi under stress conditions have also been discussed and reviewed comprehensively.     

Functional consequences of nutrient translocation in mycelial fungi

Fungi are of fundamental importance for plant and microbial nutrition with primary roles in decomposition and nutrient recycling. They also have great potential for use in areas of biotechnology such as bioremediation of organic and inorganic pollutants and biocontrol of plant pathogens. In all these contexts, environmental heterogeneity has a strong influence on growth and function. A large class of fungi overcome the difficulties encountered in such environments by the mechanism of translocation which results in the internal redistribution of nutrients within the fungal mycelium. In this paper, we use a combination of experimental techniques and mathematical modelling to examine fungal growth in general, and in particular, translocation in the common soil saprophytic fungus Rhizoctonia solani. A detailed mathematical model is presented where translocation is considered to have both diffusive and metabolically-driven components. A calibration experiment provided the necessary parameter values. Growth experiments were compared with model solutions and thus we provide strong evidence that diffusion is the dominant mechanism for translocation in homogeneous environments. In heterogeneous environments, we conclude that diffusion is still vital for exploration, i.e. the expansion of the fungal network into the surrounding area. However, we also conclude that localized resources may be utilized faster if energy is invested, i.e. when exploitation of the fungal microenvironment is enhanced by metabolically driven translocation.     

Endophytes of native grasses from South America: Biodiversity and ecology

We review and present preliminary results of studies on cool-season grass endophytes native to South America. These fungi have been studied only in Argentina, where they have been detected in 36 native grass species. The hybrid Neotyphodium tembladerae is present in an extremely wide host range found in diverse environmental conditions, but some other endophytes seem to be strictly associated with one host species in a particular environment. In host species that inhabit different environments, the incidence of endophytes is highly variable among populations and in most of the cases is clearly associated with environmental conditions. In these native grasses, Neotyphodium presents a mutualistic behaviour, conferring enhanced growth, promoting the symbiosis with arbuscular mycorrhizal fungi, and inhibiting growth of pathogenic fungi. In native forage grasses, preliminary analyses indicate that some Argentinian endophytes can produce lolines but are unlikely to produce lolitrem B or ergot alkaloids.     

湖泊生态恢复的基本原理与实现

当前我国湖泊污染及富营养化问题非常严重。湖泊治理的一个有效途径就是恢复水生植物,通过草型湖泊生态系统的培植来达到控制富营养化和净化水质的目的。但是,迄今为止,只有在局部水域或滨岸地区获得成功,恢复的水生植物主要是挺水植物或漂浮植物。鲜有全湖性的水生植物恢复和生态修复成功的例子。原因是对湖泊生态系统退化及其修复的机理了解甚少。实际上,环境条件不同决定了生态系统类型的不同,只有通过环境条件的改变才能实现生态系统的转变。利用草型湖泊生态系统来净化水质,其实质是利用生态系统对环境条件的反馈机制。但是,这种反馈无法从根本上改变其环境条件,因此其作用是有限的,不宜过分夸大。以往许多湖泊生态修复的工作之所以鲜有成功的例子,原因就是过于注重水生植物种植本身,而忽视了水生植物生长所需的环境条件的分析和改善。实施以水生植物恢复为核心的生态修复需要一定的前提条件。就富营养化湖泊生态恢复而言,这些环境条件包括氮磷浓度不能太高,富含有机质的沉积物应该去除,风浪不能太大以免对水生植物造成机械损伤,水深不能太深以免影响水生植物光合作用,鱼类种群结构应以食肉性鱼为主等等。因此,在湖泊污染很重或者氮磷负荷很高的情况下,寻求以沉水植物为核心的湖泊生态恢复来改善水质是不切实际的。为此,提出湖泊治理应该遵循先控源截污、后生态恢复,即先改善基础环境,后实施生态恢复的战略路线。     

Physiological significance of pedospheric nitric oxide for root growth,development and organismic interactions

Nitric oxide (NO) is essential for plant growth and development, as well as interactions with abiotic and biotic environments. Its importance for multiple functions in plants means that tight regulation of NO concentrations is required. This is of particular significance in roots, where NO signalling is involved in processes, such as root growth, lateral root formation, nutrient acquisition, heavy metal homeostasis, symbiotic nitrogen fixation and root–mycorrhizal fungi interactions. The NO signal can also be produced in high levels by microbial processes in the rhizosphere, further impacting root processes. To explore these interesting interactions, in the present review, we firstly summarize current knowledge of physiological processes of NO production and consumption in roots and, thereafter, of processes involved in NO homeostasis in root cells with particular emphasis on root growth, development, nutrient acquisition, environmental stresses and organismic interactions.     

菌根真菌与植物共生营养交换机制研究进展

菌根是陆地生态系统普遍存在的、由土壤中的菌根真菌侵染宿主植物根系形成的联合共生体.菌根的建立是以共生体双方的营养交换为基础的:菌根真菌从土壤中吸收氮、磷等营养物质并转运给宿主植物,供其生长;作为交换,植物则以脂质或糖的形式向菌根真菌提供其生长所必需的碳水化合物.近年来,菌根真菌与宿主植物间的营养交换机制一直是研究的热点,国内外对菌根真菌介导的植物营养物质吸收和转运机制的研究也取得了巨大进展.本文综述了丛枝和外生两种菌根真菌与宿主植物间营养交换的最新研究进展,尤其是碳、氮、磷等几种重要营养物质的吸收与双向转运机制,以及营养交换在菌根形成中的潜在调控作用,并对目前存在的关键问题和未来研究方向进行了分析和展望,这对菌根模型的建立及菌根效益的优化具有重要意义.     

Temporal variation of resource allocation between sexual and asexual structures in response to nutrient and water stress in a floating-leaved plant

Aims Adaptive plasticity of biomass allocation to different environmental stressors enables plants to maintain functional relationships among reproductive structures. In freshwater systems, water depth and nutrient content of sediments can have a major effect on biomass allocation in aquatic macrophytes. However, the relative importance of these two stressors is unknown as it is the temporal variation of biomass allocation to the stressors during the growing period. This information may be critical for understanding the tolerance of a plant to environmental conditions.Methods Here, we used four levels of environmental stressors generated by deep and shallow water and high or low sediment nutrient content in a factorial experiment to investigate the biomass allocation responses of a floating macrophyte, Trapella sinensis, during the growing period.Important findings The results showed that the lower sediment nutrient content inhibited biomass increase, whereas the lower water depth increased the sexual reproduction of the plants. The lower sediment content also led to a delay in flowering and compensated trade-offs among sexual reproduction and elongation and clonal reproduction during the growing period. These results indicated that water depth affected the ratio of biomass allocation, whereas the sediment nutrient content affected biomass accumulation when the plants faced these two environmental factors simultaneously. The temporal changes in allocation under lower sediment nutrient content underscored the importance of collecting data at different stages of growth when trying to interpret resource allocation, especially in resource-limited environments.     

Prospects, advantages and limitations of future crop production systems dependent upon the management of soil processes

Current agriculture in Europe is predominantly reliant upon external inputs, such as fertilisers and pesticides, rather than upon soil processes, for the resources it needs for crop growth. Inputs of fertilisers have environmental disbenefits, some of which have been highlighted by the introduction of the Water Framework Directive. Here we review the scope to improve current production systems so as to reduce environmental impact while broadly maintaining productivity. The review focuses upon both the potential impacts of means of increasing soil nutrient supply, in the absence of fertilisers, and the potential impact on nutrient uptake of modifications to the functioning of the root system. Assessments of the functioning of the root system must allow for all root types and for the contribution of arbuscular mycorrhizal fungi (AMF). The development of productive systems based around soil processes will thus depend upon both better management of soil processes, especially when they relate to holding nutrients such as nitrogen within the system, and to developments in understanding roots and their associated microbes.     

森林生态系统中木腐真菌群落形成机理及生态功能

在森林生态系统中,枯死木是一个重要的组成部分,为很多生物提供栖息地,有助于养分循环以及碳和水的储存.木材分解是森林生态系统养分循环、土壤形成和碳收支的决定性过程,越来越受到森林生态学家、病理学家和管理者的重视.在此过程中,木腐真菌通过分泌多种酶降解木材主要成分,实现生态系统中的物质循环,具有极为关键和重要的作用.木腐真...     

Development of a Real-Time PCR assay for quantitative assessment of uncultured freshwater zoosporic fungi

Recently, molecular environmental surveys of the eukaryotic microbial community in lakes have revealed a high diversity of sequences belonging to uncultured zoosporic fungi. Although they are known as saprobes and algal parasites in freshwater systems, zoosporic fungi have been neglected in microbial food web studies. Recently, it has been suggested that zoosporic fungi, via the consumption of their zoospores by zooplankters, could transfer energy from large inedible algae and particulate organic material to higher trophic levels. However, because of their small size and their lack of distinctive morphological features, traditional microscopy does not allow the detection of fungal zoospores in the field. Hence, quantitative data on fungal zoospores in natural environments is missing. We have developed a quantitative PCR (qPCR) assay for the quantification of fungal zoospores in lakes. Specific primers were designed and qPCR conditions were optimized using a range of target and non-target plasmids obtained from previous freshwater environmental 18S rDNA surveys. When optimal DNA extraction protocol and qPCR conditions were applied, the qPCR assay developed in this study demonstrated high specificity and sensitivity, with as low as 100 18S rDNA copies per reaction detected. Although the present work focuses on the design and optimization of a new qPCR assay, its application to natural samples indicated that qPCR offers a promising tool for quantitative assessment of fungal zoospores in natural environments. We conclude that this will contribute to a better understanding of the ecological significance of zoosporic fungi in microbial food webs of pelagic ecosystems.     

种子微生物生态学研究进展

植物种子微生物生态学是研究与种子相联合的微生物的组成﹑功能﹑演替、它们之间关系及其与宿主之间相互关系的科学。种子中蕴含着丰富的微生物资源,它们对种子以及植物的健康具有重要的影响。不同种类植物种子联合的微生物群落由于受到种子本身及外界环境因素的影响而有所差异。论述了种子微生物生态学的概念、主要研究方法、种子微生物生态系统中的微生物种类、相关影响因素,以及种子微生物生态学研究的发展方向。种子微生物生态学的研究对生产实践有重要意义,同时也将丰富种子生物学的内容,对种子科学的发展起到促进作用。     

AM fungi root colonization increases the production of essential isoprenoids vs. nonessential isoprenoids especially under drought stress conditions or after jasmonic acid application

Previous studies have shown that root colonization by arbuscular mycorrhiza (AM) fungi enhances plant resistance to abiotic and biotic stressors and finally plant growth. However, little is known about the effect of AM on isoprenoid foliar and root content. In this study we tested whether the AM symbiosis affects carbon resource allocation to different classes of isoprenoids such as the volatile nonessential isoprenoids (monoterpenes and sesquiterpenes) and the non-volatile essential isoprenoids (abscisic acid, chlorophylls and carotenoids). By subjecting the plants to stressors such as drought and to exogenous application of JA, we wanted to test their interaction with AM symbiosis in conditions where isoprenoids usually play a role in resistance to stress and in plant defence. Root colonization by AM fungi favoured the leaf production of essential isoprenoids rather than nonessential ones, especially under drought stress conditions or after JA application. The increased carbon demand brought on by AM fungi might thus influence not only the amount of carbon allocated to isoprenoids, but also the carbon partitioning between the different classes of isoprenoids, thus explaining the not previously shown decrease of root volatile isoprenoids in AM plants. We propose that since AM fungi are a nutrient source for the plant, other carbon sinks normally necessary to increase nutrient uptake can be avoided and therefore the plant can devote more resources to synthesize essential isoprenoids for plant growth.     

Changes in atmospheric CO2 influence the allergenicity of Aspergillus fumigatus

Increased susceptibility to allergies has been documented in the Western world in recent decades. However, a comprehensive understanding of its causes is not yet available. It is therefore essential to understand trends and mechanisms of allergy‐inducing agents, such as fungal conidia. In this study, we investigated the hypothesis that environmental conditions linked to global atmospheric changes can affect the allergenicity of Aspergillus fumigatus, a common allergenic fungal species in indoor and outdoor environments and in airborne particulate matter. We show that fungi grown under present‐day CO₂ levels (392 ppm) exhibit 8.5 and 3.5 fold higher allergenicity compared to fungi grown at preindustrial (280 ppm) and double (560 ppm) CO₂ levels, respectively. A corresponding trend is observed in the expression of genes encoding for known allergenic proteins and in the major allergen Asp f1 concentrations, possibly due to physiological changes such as respiration rates and the nitrogen content of the fungus, influenced by the CO₂ concentrations. Increased carbon and nitrogen levels in the growth medium also lead to a significant increase in the allergenicity. We propose that climatic changes such as increasing atmospheric CO₂ levels and changes in the fungal growth medium may impact the ability of allergenic fungi such as A. fumigatus to induce allergies.     

Seed Mass Effects Across Environments in an Annual Dune Plant

The natural environment has been shown to vary at both large and small scales. As the relationship between seed mass and the growth of subsequent plants varies depending on the environment, it is important to study the effects of seed mass on plant growth across environments for a better understanding of the ecological significance of seed mass. In this study, the effects of seed mass on the growth ofCakile edentula, an annual growing in the sand dunes along the Great Lakes, was examined across a wide range of soil nutrient, moisture levels, and depths of sand burial under controlled greenhouse conditions. The development of plants, such as time of true leaf production, flower bud formation, and fruit maturation, was faster in proportion to the original seed mass of the plants across all of the tested environmental factors. As drastic environmental variations prevail in beach sand dune systems, quick development and early reproductive growth of plants from the large seeds would enable them to survive sand burial and escape natural hazards. It is concluded that seed mass has significant effects on the performance ofC. edentulaacross a wide range of environmental variation.     

The role of fungi in biogenic weathering in boreal forest soils

In this article we discuss the possible significance of biological processes, and of fungi in particular, in weathering of minerals. We consider biological activity to be a significant driver of mineral weathering in forest ecosystems. In these environments fungi play key roles in organic matter decomposition, uptake, transfer and cycling of organic and inorganic nutrients, biogenic mineral formation, as well as transformation and accumulation of metals. The ability of lichens, mutualistic symbioses between fungi and photobionts such as algae or cyanobacteria, to weather minerals is well documented. The role of mycorrhizal fungi forming symbioses with forest trees is less well understood, but the mineral horizons of boreal forests are intensively colonised by mycorrhizal mycelia which transfer protons and organic metabolites derived from plant photosynthates to mineral surfaces, resulting in mineral dissolution and mobilisation and redistribution of anionic nutrients and metal cations. The mycorrhizal mycelia, in turn provide efficient systems for the uptake and direct transport of mobilised essential nutrients to their host plants which are large sinks. Since almost all (99.99 %) non-suberised lateral plant roots involved in nutrient uptake are covered by ectomycorrhizal fungi, most of this exchange of metabolites must take place through the plant–fungus interface. This idea is still consistent with a linear relationship between soil mineral surface area and weathering rate since the mycelia that emanate from the tree roots will have a larger area of contact with minerals if the mineral surface area is higher. Although empirical models based on bulk soil solution chemistry may fit field data, we argue that biological processes make an important contribution to mineral weathering and that a more detailed mechanistic understanding of these must be developed in order to predict responses to environmental changes and anthropogenic impact.     

The effect of different nutrient concentrations on the growth rate and nitrogen storage of watercress (Nasturtium officinale R. Br.)

The mechanisms that allow broadly distributed aquatic plants to inhabit variable resource environments are unclear, yet understanding these mechanisms is important because broad environmental tolerance is often linked to invasiveness in terrestrial and aquatic plants. In an experimental stream, we examined the effects of different nutrient concentrations on the growth rate, biomass, and foliar nutrient concentrations of a cosmopolitan and potentially invasive aquatic plant, Nasturtium officinale (R. Br.). Nasturtium seedlings were grown under six nutrient treatment levels ranging from 0.64 μm N:0.09 μm P to 1531 μm N:204.13 μm P, for 8 weeks. Absolute and relative growth rates, and biomass of seedlings increased along a gradient of increasing nutrient concentrations but the effect of nutrient concentration was dependent on growing time. Seedling biomass varied among nutrient treatments in weeks 4 through 8 of the experiment, but did not differ in week 2. By week 8, the two highest nutrient treatments had greater biomass than the two lowest nutrient treatments. Foliar nitrogen concentration increased, whereas carbon concentration and C:N ratios decreased in response to increasing nutrients. Nasturtium grows slowly in nutrient-poor conditions but rapidly increases its growth, biomass accrual, and nitrogen storage as conditions become nutrient-rich. The response of Nasturtium to enhanced nutrient conditions may indicate how aquatic nuisance species successfully invade and dominate plant communities in streams, where resources often vary both temporally and spatially.     

Ecology of ligninolytic fungi associated with leaf litter decomposition

Advances in our understanding of the decomposition processes in forest ecosystems over the past three decades have demonstrated the importance of lignin as a regulating factor in the decomposition of leaf litter. Consequently, increasingly more attention is being focused on the ecology of fungi associated with lignin decomposition. The aim of this review is to provide a critical summary of the ecology of ligninolytic fungi inhabiting leaf litter and forest floor materials. The review focuses on the following aspects of ligninolytic fungi: the taxonomic and functional diversity of ligninolytic fungi, the outcomes of interactions between ligninolytic fungi and other organisms, the activity and abundance of ligninolytic fungi measured by the production of bleached leaves and humus, the activity of ligninolytic enzymes in soil environments, the substratum and seral succession, spatial and temporal patterns in both mycelial abundance and species distribution, and the effect of environmental factors such as nitrogen deposition and global environmental changes on ligninolytic fungi. This review integrates the ecology, diversity, and activity of ligninolytic fungi into the context of an ecosystem in order to provide an understanding of the roles of ligninolytic fungi in decomposition processes. Takashi Osono is the recipient of the 11th Denzaburo Miyadi Award.     

Effects of Nutrient Level on Maternal Choice and Siring Success in <Emphasis Type="Italic">Cucumis sativus</Emphasis> (Cucurbitaceae)

Plants have evolved many mechanisms to increase the chance of gene dispersal mainly through pollen and environmental factors play an important role. Understanding the mechanism behind gene dispersal is therefore crucial in the correct evaluation of the use of genetically modified crops for cultivation. In this paper we address the question of weather nutrient availability for the female affects the outcome of pollen competition between two pollen donor cultivars of Cucumis sativus. We do this by carrying out controlled crosses of female plants grown at three different nutrient levels. We separated the effect of a specific donor from the effect of pollen tube growth rate by using reversed crosses of fast and slow pollen. Our results show that female effects on siring ability vary with nutrient level. Pollen with a high pollen tube growth rate was more successful when nutrient availability for the female was high. This could be the result of selection on the female to adjust preference according to environmental circumstances. Pollen tube growth rate was measured under nutrient rich circumstances, thus high performers possessed traits adapted to a nutrient rich situation. Due to trade-off effects, these traits might not be advantageous in poor environments. Instead, individuals adapted to low nutrient circumstances will have a higher pollen tube growth rate. If siring ability varies with the environment of the recipient plant, this means that assessments of gene flow must account for this variation and include both pollen donors and recipient plants subjected to a range of environmental circumstances. In risk assessments of transgenic plants, plants are often kept under experimental, homogenous conditions. If our results also apply to other species, estimates of gene flow under constant conditions may be misleading. Selection on siring ability and female preference have fundamental effects on gene flow and need to be considered in risk assessments of transgenic plants.Co-ordinating editor: I. Olivieri