Archaeological Evidence of the Cultural Importance of <Emphasis Type="Italic">Agave spp</Emphasis>. in Pre-Hispanic Colima,Mexico

Archaeological Evidence of the Cultural Importance of Agave spp . in Pre-Hispanic Colima, Mexico. Production of agave-based food and fermented alcoholic beverages was highly relevant culturally and socially in pre-European contact western Mesoamerica. It has been hypothesized that agave distillation in western Mexico began in Colima in the early Colonial Era through adaptation of introduced Filipino techniques. Archaeological evidence is presented confirming the cultural and social significance of agave in Colima before contact, one of the fundamental conditions supporting this hypothesis. An analysis of circular subterranean stone structures in residential and ceremonial contexts (Classic and Postclassic periods: 200–1500 common era [CE]), and a comparison with stone ovens currently used to cook agave for the creation of spirits, indicate these structures were probably used for preparing food, including agave. Analysis of funerary ceramic vessel offerings with agave images (Colima phase: 400–600 CE) are reported for the first time. Their characteristics, and those of the associated burials and tombs, suggest those buried were agave growers or alcoholic beverage producers who fulfilled relevant roles in the society. Most of the agave images probably represent Agave angustifolia Lem and its cultivation. During the Colonial Era, the cultural and social relevance of agaves almost disappeared in Colima, possibly due to drastic reductions in the native human population, changing land use practices, and prohibitions against the production and sale of native alcoholic beverages.     

The Role of Organic Acids in the Domestication of <Emphasis Type="Italic">Oxalis tuberosa</Emphasis>: A New Model for Studying Domestication Resulting in Opposing Crop Phenotypes<Superscript>1</Superscript>

The Role of Organic Acids in the Domestication of Oxalis tuberosa: A New Model for Studying Domestication Resulting in Opposing Crop Phenotypes. Though few crops display directly opposing domesticated phenotypes, these crops may be the key to understanding domestication processes that address conflicting selective pressures in the agricultural ecosystem. Two relatively well-known examples are cassava (Manihot esculenta Crantz), which has high-cyanide and low-cyanide varieties, and potato (Solanum section Petota). Among the potatoes are several species, including the common potato (Solanum tuberosum L.), that have low levels of glycoalkaloids and there are other species of “bitter potato” with elevated levels of glycoalkaloids. We propose that Oxalis tuberosa Molina, “oca,” may represent a third example of such a crop system, with opposing high organic acid and low organic acid cultivars. Each cultivar set has different cultural food preparation practices (“use-categories”), similar to the “use-categories” that have been described for potatoes in the Andes (Brush et al. Economic Botany 35;70–88, 1981; Zimmerer Journal of Biogeography 18;165–178, 1991). Our initial analyses suggest that organic acids in tubers may be an important biochemical difference between use-categories, based on both oxalic acid and pH data. Here, we review our understanding of organic acids in oca tubers, while highlighting areas that merit further investigation.     

Origins and Dispersal of Cultivated Vanilla (<Emphasis Type="Italic">Vanilla planifolia</Emphasis> Jacks. [Orchidaceae])<Superscript>1</Superscript>

Origins and Dispersal of Cultivated Vanilla (Vanilla planifolia Jacks. [Orchidaceae]). Vanilla is a clonally propagated crop originating from Mesoamerica. Information regarding the circumstances under which vanilla cultivation began is incomplete. Presumably, the Totonac people of Papantla (north-central Veracruz, Mexico) were the earliest to cultivate vanilla; however, the oldest reports of vanilla use relate to the pre-Columbian Maya of southeastern Mexico/Central America, where vanilla was a cacao-beverage spice. We utilized Amplified Fragment Length Polymorphism (AFLP) marker diversity to infer the origins and relationships among cultivated and non-cultivated vanilla in Mesoamerica and on islands in the Indian Ocean, which comprise today’s principal production regions of vanilla. Our results suggest that, genetically, vanilla cultivated outside of Mesoamerica is most closely related to cultivated stock from Papantla; whereas unique clones of V. planifolia are found in non-cultivated and cultivated individuals from elsewhere in Mesoamerica. This is consistent with a single origin for cultivated vanilla outside of Mexico, along with multiple origins for cultivated material within Mexico. These data suggest that vestiges of pre-Columbian Maya vanilla cultivars are not found in commercial production today.     

An ecological classification of Central European macromoths: habitat associations and conservation status returned from life history attributes

To be used as a predictive conservation tool, classification of animal habitats should rely on actual resource requirements of individual species. Shreeve et al. (J Insect Conserv 5:145–161, 2001) produced a resource-based habitat classification for British butterflies, obtaining habitat association groups, whose constituent species differed in their distribution extent, distribution change and vulnerability in Britain. To test the utility of this approach for a group with a less-known biology, we produced a resource-based classification of habitats of Central European macromoths. We worked with macrolepidopteran moth families, except for the megadiverse Geometridae and Noctuidae. We produced a matrix of 178 life history attributes describing resource use by 164 species, subjected the matrix to ordination analysis, and compared the resulting moths groupings with external ecological information. Five habitat association groups were distinguished: I—close canopy moths, II—open canopy moths, III—grasslands moths, IV—herb-feeding hawk moths, and V—lichen feeders. The classification sustained deleting attributes related to host plants taxonomy. Groups I–III sustained control for taxonomic positions of the moths, whereas IV and V did not. Members of the groups differed in the representation of externally obtained habitat associations, biogeography elements, threat status, and range size. Endangered species were over-represented in groups II and III and underrepresented in group I, in agreement with recent land cover changes across the continent. Species resources can be used to reconstruct their habitat needs, and it is possible to scale up from life histories through habitat use to range structures.     

Estimation of population density of European pine marten in central Italy using camera trapping

Evaluating presence and abundance of small carnivores is essential for their conservation. In Italy, there is scarce information on European pine marten distribution, and no data are published on its abundance. Camera traps have been widely used to estimate population density applying capture–recapture models for species in which individual recognition is possible. Here we estimate the abundance of European pine martens in central Italy using camera trapping and a model that allows the estimation of population density without the need for individual recognition Rowcliffe et al. (Anim Conserv 11:185–186, 2008). Camera trapping was also used to evaluate habitat use patterns by martens. Fifteen camera traps were deployed in 90 placements for 15 days each, for a total of 1,334 camera days. Pine martens were captured in 24% of camera trap placements with a mean trap success rate of 0.33 photographs per camera placement. Estimated pine marten population density in the study area was 0.34 individuals km⁻². Marten trap rate was not strongly associated with any habitat type, although there were trends towards lower probability of records at locations with high coverage of cultivated fields and higher probability of records at locations with high coverage of human-made woodland. The results suggest that pine martens in this area are not confined to wooded habitat. To our knowledge, this study is the first application of the Rowcliffe et al. (Anim Conserv 11:185–186, 2008) method to a wild carnivore population and, furthermore, the first estimation of population density of pine martens in Italy.     

The first find in southern Georgia of fossil honey from the Bronze Age,based on palynological data

The results of a palynological analysis of the organic content of earthenware pots from the Kodiani burial mound (27th–25th centuries b.c.) are reported. The character of the palynological spectrum differs significantly from that of a buried soil within the same burial mound. In the samples taken from the pots, pollen concentration is very high, pollen grains are perfectly preserved and an abundance of pollen from insect-pollinated plants is recorded. It is well known that these features are peculiar to honey palynospectra. In all three pots the pollen of Rosaceae, a family of plants that produce good honey, is dominant. However, the second, third and fourth most dominant pollen types in all three samples are different. For example, Tilia pollen is the second dominant in only one pot. In the second pot, Apiaceae and Poaceae are predominant, and in the third pot, Poaceae, both wild and cultural, is the second dominant. It is clear that the different pots contained different types of honey. The variety of honey types indicates highly developed bee-keeping in the Early Bronze Age. In the same regions of Georgia, agriculture was also highly developed. Wheat cultivation was very important. According to the palynospectra, the landscape and climate of this period were probably quite different to those of today.     

Traveller or tourist? Jack Kerouac and the commodification of culture

Jack Kerouac, the author of On The Road, was a central figure of the Beat Generation, a generation which rebelled against middle-class conformity in post–World War II America. Kerouac described himself as “a religious wanderer” (Kerouac 2006: 2), but an examination of his texts and life suggest his travels may also be understood as tourism. Viewed through the prism of tourism, this study will argue, for example, that MacCannell’s notion of the tourist’s quest for reality and authenticity (MacCannell 1989: 3) provides some insight into why Kerouac wrote that just south of Macon, Georgia, he and his travelling companion Neal Cassady stopped and got out of the car, “and suddenly both of us were stoned with joy to realize that in the darkness all around us was fragrant green grass and the smell of fresh manure and warm waters” (Kerouac 1957: 115). As Kerouac rebelled against being, as one of his protagonists in The Dharma Bums put it, “imprisoned in a system of work, produce, consume, work, produce, consume” (Kerouac 2006: 73) he travelled across America on a rapidly improving network of highways, turning “mobility into a retreat” (Holladay and Holton 2009: 42). Kerouac alternately identified himself as a hobo (Kerouac 1973: 181) and “not a real hobo” (Kerouac 1973: 173), but this article asks whether Kerouac’s travels were those of the last in a line of wanderers rebelling against conformity and modernization or a precursor of mobile mass tourism in America.     

ROS-Mediated ABA Signaling

In plants, reactive oxygen species (ROS) are short-lived molecules produced through various cellular mechanisms in response to biotic and abiotic stimuli. ROS function as second messengers for hormone signaling, development, oxygen deprivation, programmed cell death, and plant–pathogen interactions. Recent research on ROS-mediated responses has produced stimulating findings such as the specific sources of ROS production, molecular elements that work in ROS-mediated signaling and homeostasis, and a ROS-regulated gene network (Neill et al., Curr Opin Plant Biol 5:388–395, 2002a; Apel and Hirt, Annu Rev Plant Biol 55:373–399, 2004; Mittler et al., Trends Plant Sci 9:490–498, 2004; Mori and Schroeder, Plant Physiol 135:702–708, 2004; Kwak et al., Plant Physiol 141:323–329, 2006; Torres et al., Plant Physiol 141:373–378, 2006; Miller et al., Physiol Plant 133:481–489, 2008). In this review, we highlight new discoveries in ROS-mediated abscisic acid (ABA) signaling. Drs. Daeshik Cho and June M. Kwak are the corresponding authors for this paper.     

LANCE: Laccase-nanoparticle conjugates for the elimination of micropollutants (endocrine disrupting chemicals) from wastewater in bioreactors

Elimination of recalcitrant chemicals during wastewater treatment is a difficult problem for both developing and industrialized countries. The biological elimination of very persistent xenobiotics such as endocrine disrupting chemicals from municipal and industrial sewage treatment plants is an ambitious challenge as existing physico-chemical methods, such as advanced oxidation processes, are energy-intensive and consume high amounts of chemicals. Through the entry into force of strict legislative measures, such as the Water Framework Directives (EU WFD in Directive 2000/60/EC of the European Parliament and of the Council establishing a framework for the Community action in the field of water policy, 2000) and REACH (REACH EU in European Community Regulation on chemicals and their safe use (EC 1907/2006), 2007), the market for wastewater treatment is exploding. For instance the European market potential for the membrane bioreactor technology is estimated to 57 M€ per year. Based on recent progresses in nanotechnology, new developments in catalysis and environmental applications can be foreseen for the near future. Indeed, because of high surface area-to-volume ratio in nano-systems, heterogeneous enzymatic or catalytic reactions can be greatly enhanced. In the LANCE project a nanoparticle (NP)-based technology is under development. Cheap and resistant oxidative enzymes, i.e. laccases are immobilized onto the surface of the particles in order to produce systems possessing a broad substrate spectrum for the degradation of cocktails of recalcitrant pollutants. One of the objectives is to produce NPs that are compatible with wastewater treatment and can be synthesised in a cost-effective and large-scale fashion, e.g. silica-based NPs using flame spray pyrolysis and emulsion-based techniques. The modified particles are applied in bioreactors where they are retained, i.e. membrane bioreactors or perfusion basket reactors to eliminate pollutants from the wastewater. Such reactors allow multi-cycle use of the NPs coated with active enzymes and thus contribute to decrease the treatment costs. The two-year activities of the LANCE project encompass the synthesis of various NP systems, the immobilization of selected low cost industrial laccases on the latter, and the technical and scientific proof of the “depollution” concept.     

The bipolar bivalve <Emphasis Type="Italic">Oxytoma (Palmoxytoma) cygnipes</Emphasis> (Young &; Bird, 1822) in the Upper Pliensbachian of Germany

The morphologically conspicuous bivalve Oxytoma (Palmoxytoma) cygnipes (Young & Bird, 1822), known for its palaeogeographically bipolar distribution, from a limestone bed in the boundary “Belemniten–Schichten”/Amaltheenton formation, Lower Jurassic, in N Germany is described. The occurrence of this palaeoceanographically significant bivalve points to an influx of cool seawater from the Arctic to the North-German Basin at the base of the Upper Pliensbachian, just before the deposition of the Amaltheenton formation. A review of previously reported occurrences on the NW European Shelf indicates two distinct stratigraphic intervals of occurrence of this taxon: the Rhaetian–Hettangian boundary and the Upper Pliensbachian. Whereas the former interval of occurrence may be related to short-term cooling in the course of the end-Triassic extinction event, the latter is interpreted as reflecting the influx of a cool water current to the eastern part of the NW European Shelf, which continued southwards parallel to the coast of the Bohemian–Vindelician High.     

A new method for quantifying genotyping errors for noninvasive genetic studies

More and more noninvasive genetic data are being produced but a general methodology to quantify genotyping error rates from non-pilot data remains lacking. Here we propose a mathematical approach to estimate genotyping error rates by exploring the relationship between errors and PCR replicates. This method can be used to quantify the error rates for either the multi-tubes approach designed by Taberlet et al. (Nucleic Acids Res 24: 3189–3194, 1996) or the pilot method by Prugh et al. (Mol Ecol 14: 1585–1596, 2005).     

液体植物保护膜防治瓜实蝇的效果评价

【背景】瓜实蝇是一种重要的世界性检疫害虫,广泛分布在我国的热带、亚热带地区。在室内和田间测定了液体植物保护膜对瓜实蝇的控制效能,并初步探索了该保护膜的作用方式,以期为瓜实蝇的绿色防控提供一定的技术支撑。【方法】测定了应用保护膜后瓜实蝇的产卵、存活以及对苦瓜的为害率。【结果】保护膜显著影响了瓜实蝇产卵、存活以及选择性。随着保护膜浓度的升高,瓜实蝇的存活率和在供试苦瓜段上的产卵量逐渐下降,但300和400倍保护膜之间的差异不显著。当浓度达到400倍时产卵量最低,为0.33粒,死亡率最高,约为50%;室内研究发现保护膜可持续影响瓜实蝇产卵5 d;此外,通过将保护膜应用在损伤的苦瓜上,发现保护膜并没有抑制瓜实蝇产卵。在田间,研究发现苦瓜的果长影响了保护膜的应用效能,2种果长的苦瓜应用保护膜后12~14 cm苦瓜的被害率显著低于6~8 cm苦瓜的被害率。【结论与意义】400倍的植物液体保护膜是防治瓜实蝇的最佳浓度,应用时间建议每4 d一次。保护膜最合适的应用时期为果长发育至12~14 cm时,即生长后期。施用保护膜时一定均匀,且在寄主果实受到损伤时不宜喷施保护膜。     

Is there a risk to living large? Large size correlates with reduced growth when stressed for knapweed populations

A central hypothesis in ecology is that plant life history evolution is constrained by fundamental “compromises between the conflicting selection pressures resulting from particular combinations of competition, stress, and disturbance”, with stress being defined as abiotic conditions that restrict production. Biogeographic differences among native and non-native ranges of invasive plants may provide unique opportunities for tests of this theory. We conducted a greenhouse experiment with Centaurea stoebe plants from North American and European populations. We compared the total biomass and phenotypic plasticity indices for plants from the native and non-native ranges under stressed and non-stressed conditions. The average size of Centaurea stoebe plants from 13 North American populations was greater than that of plants from 18 European populations regardless of stress treatment. However, when plants from the same populations were exposed to lower resources the differences in biomass between plants from North American and European populations were significantly less, suggesting that large plants were poorer stress tolerators. For all 31 populations the regression slope for the relationship between mean mass for populations in non-stressful conditions and mean mass in stressful conditions was less than 1.0, indicating that populations that produced large plants in good conditions also produced plants that grew disproportionately less in stressful conditions. These findings suggest that Centaurea stoebe may be evolving towards being a good “competitor” (sensu Grime, 1977) in its invasive range, but at the cost of being a good “stress tolerator”.     

Microflora in fish digestive tract plays significant role in digestion and metabolism

Microflora of the environment plays an important role in the formation of the microflora of the digestive tract of fishes (Strom and Olafsen Microbiology of poecilotherms Elsevier, Amsterdam, pp 181–185 1990; Hansen et al. Appl Environ Microbiol 58:461–470 1992). Compared to water, digestive tract is an ecosystem far richer in nutrients and therefore more favorable for the growth of the majority of bacteria. Definitely, not all bacteria in food which gain entry in the digestive tract of fishes establish themselves there (Yan-Bo Wang et al. Aquaculture 281(1–4): 1–4 2008). Part of them adapts themselves in the digestive tract, whereas the others are digested by the enzymes produced by the host organism. Microorganisms present in the digestive tract feed on the food of the host organism which is digested by the enzymes produced by them and by the latter. ‘Chymous’ gets formed which decides the abundance and qualitative composition of microorganisms present in digestive tract.     

Interactive Bodies: The Semiosis of Architectural Forms

In this paper architectural forms are presented as symbolic forms issued from the complex semiosis that characterises human cognition (Ferreira (2007, 2010)). Being semiotic objects, these symbolic forms are, consequently, context- dependent_they emerge and have meaning, i.e., they are assigned a functional and/or aesthetic value, in particular physical, social and cultural frameworks. As it happens with all semiotic objects, architectural forms, whatever their nature, are not static but highly interactive. In fact, they act as agents of specific semiotic processes, engaged in a permanent dialectic relationship with the environment they are embedded in. From this dialectics important physical, social, cultural and economic changes frequently arise, redefining this way the original framework for decades to come. As Pallasmaa (2009) points out: “Architecture is existentially rooted, and it expresses fundamental existential experiences, the complex condensation of how it feels to be human being in this world. Architecture grounds and frames existence and creates specific horizons of perception, understanding and identity.” Architecture happens in the context of particular landscapes both natural and man-made, individuating spaces, assigning them an identity, turning the frequently undifferentiated physical environment into “locus”, “place”, “site”, “ort”, definitely contributing to the definition of the mental map that individual minds are able to share collectively. The fundamental role played by architectural forms in the definition of “place” and identity and in the shaping or reshaping of a physical, social and cultural environment is analysed in this paper through a case study that observes the consequences of this dynamics in the development of the social and cultural tissue of a particular city.     

Target selection of soluble protein complexes for structural proteomics studies

Background  

Protein expression in E. coli is the most commonly used system to produce protein for structural studies, because it is fast and inexpensive and can produce large quantity of proteins. However, when proteins from other species such as mammalian are produced in this system, problems of protein expression and solubility arise [1]. Structural genomics project are currently investigating proteomics pipelines that would produce sufficient quantities of recombinant proteins for structural studies of protein complexes. To investigate how the E. coli protein expression system could be used for this purpose, we purified apoptotic binary protein complexes formed between members of the Caspase Associated Recruitment Domain (CARD) family.     

Hadamard Phylogenetic Methods and the <Emphasis Type="Italic">n</Emphasis>-taxon Process

The Hadamard transform (Hendy and Penny, Syst. Zool. 38(4):297–309, 1989; Hendy, Syst. Zool. 38(4):310–321, 1989) provides a way to work with stochastic models for sequence evolution without having to deal with the complications of tree space and the graphical structure of trees. Here we demonstrate that the transform can be expressed in terms of the familiar P[τ]=e ^Q[τ] formula for Markov chains. The key idea is to study the evolution of vectors of states, one vector entry for each taxa; we call this the n-taxon process. We derive transition probabilities for the process. Significantly, the findings show that tree-based models are indeed in the family of (multi-variate) exponential distributions.     

Demographic History of Indigenous Populations in Mesoamerica Based on mtDNA Sequence Data

The genetic characterization of Native American groups provides insights into their history and demographic events. We sequenced the mitochondrial D-loop region (control region) of 520 samples from eight Mexican indigenous groups. In addition to an analysis of the genetic diversity, structure and genetic relationship between 28 Native American populations, we applied Bayesian skyline methodology for a deeper insight into the history of Mesoamerica. AMOVA tests applying cultural, linguistic and geographic criteria were performed. MDS plots showed a central cluster of Oaxaca and Maya populations, whereas those from the North and West were located on the periphery. Demographic reconstruction indicates higher values of the effective number of breeding females (Nef) in Central Mesoamerica during the Preclassic period, whereas this pattern moves toward the Classic period for groups in the North and West. Conversely, Nef minimum values are distributed either in the Lithic period (i.e. founder effects) or in recent periods (i.e. population declines). The Mesomerican regions showed differences in population fluctuation as indicated by the maximum Inter-Generational Rate (IGRmax): i) Center-South from the lithic period until the Preclassic; ii) West from the beginning of the Preclassic period until early Classic; iii) North characterized by a wide range of temporal variation from the Lithic to the Preclassic. Our findings are consistent with the genetic variations observed between central, South and Southeast Mesoamerica and the North-West region that are related to differences in genetic drift, structure, and temporal survival strategies (agriculture versus hunter-gathering, respectively). Interestingly, although the European contact had a major negative demographic impact, we detect a previous decline in Mesoamerica that had begun a few hundred years before.