The impact of short rotation coppice on the concentrations of aliphatic soil lipids

The aim was to investigate how short rotation coppice (SRC) on arable soil in Northern Germany altered the concentrations of soil lipids, and thus, soil organic matter (SOM) quality. The concentrations of organic C and aliphatic lipids were determined in the litter and underlying soil layers under two willow (Salix caprea × viminalis clone 6, S. viminalis clone 78–183) and two poplar (Populus trichocarpa × deltoides cv. Beaupré, P. nigra × maximowiczii cv. Max 4) clones at a 14-year-old SRC and a permanent arable reference site. High organic C concentrations in the topsoil under S. viminalis and P. trichocarpa × deltoides agreed with high concentrations of long C-chain saturated n-alkanoic acids, n-alkanols and n-alkanes. These disproportionally higher concentrations of long C-chain saturated n-alkanoic acids (factor 3.6) and n-alkanols (factor 3.8) under S. viminalis and of n-alkanols (factor 3.9) under P. trichocarpa × deltoides than in an arable reference treatment indicated a lower microbial decomposability and, thus, a clone-specific accumulation of these SOM constituents. The clone-specific enrichments in long C-chain saturated n-alkanoic acids, n-alkanols and n-alkanes indicate that clone selection may be an approach to additional long-term storage of atmosphere CO₂ in the form of stable SOM under SRC.     

Factors affecting songbird communities using new short rotation coppice habitats in spring

The aim of this study was to describe the songbird communities occupying willow and poplar short rotation coppice (SRC) crops during the breeding season, and to identify the features of existing plantations that affect their abundance. Songbird point-counts were undertaken at 66 different plots of SRC at 29 sites throughout Britain and Ireland during spring 1993. Measures of vegetation and coppice management in each plot were also taken. The songbird species using the SRC survey plots were similar to those reported from traditional coppice habitats. Willow SRC contained more resident and migrant songbird species than poplar SRC. Warbler species and buntings in particular were rarely recorded from poplar plots. Finches, tits and thrushes were recorded equally from both willow and poplar. More migrant species were recorded from year 2 willow coppice (i.e. in its third growth season since winter cutting) than in either year 1 or year 3. Most resident species selected older willow or poplar coppice growth up to year 3 or 4, the oldest age classes in the sample. These 4-year trends for migrant and resident songbirds are similar to those observed in traditional coppice woodland over a 10- or 12-year rotation. Skylark and Meadow Pipit were recorded from recently cut SRC plots (year 0). In a regression analysis, the number of songbird species and individuals, particularly migrants, were found to be positively related to the increased structural density or complexity of the coppice vegetation.     

Biomass production and energy balance of a 12‐year‐old short‐rotation coppice poplar stand under different cutting cycles

Given today's political targets, energy production from agricultural areas is likely to increase and therefore needs to be more sustainable. The aim of this study was thus to carry out a long‐term field trial based on the poplar short‐rotation coppice (SRC), in order to compare dry matter, energy‐use efficiency and the net energy yield obtainable from this crop in relation to different harvest frequencies (1‐, 2‐ and 3‐year cutting cycles). The results showed that poplar SRC performed very well under temperate climates as it can survive up to 12 years, providing a considerable annual biomass yield (9.9, 13.8, 16.4 t ha^?1 yr^?1 for annual T1, biannual T2 and triennial T3 cutting cycles, respectively). The system tested in southern Europe showed a positive energy balance characterized by a high energy efficiency. We found that the choice of harvest interval had huge consequences in terms of energy yields. In fact, the energy efficiency improved from T1 to T2 and T3, while the net energy yield increased from 172 to 299 GJ ha^?1 yr^?1. This study suggests that, with 3‐year harvest cycles, poplar SRC can contribute to agronomic and environmental sustainability not only in terms of its high yield and energy efficiency but also in terms of its positive influence on limiting soil tillage and on the environment, given its low pesticide and nutrient requirements.     

Biomass production and nutrient cycling in Eucalyptus short rotation energy forests in New Zealand. I: Biomass and nutrient accumulation

Accumulation of biomass and nutrients (N, P, K, Ca, Mg and Mn) was measured during the first 3-year rotation of three Eucalyptus short rotation forest species (E. botryoides, E. globulus and E. ovata) irrigated with meatworks effluent compared with no irrigation. E. globulus had the highest biomass and nutrient accumulation either irrigated with effluent or without irrigation. After 3-year growth, E. globulus stands irrigated with effluent accumulated 72 oven dry t/ha of above-ground total biomass with a total of 651 kg N, 55 kg P, 393 kg K, 251 kg Ca, 35 kg Mg and 67 kg Mn. Effluent irrigation increased the accumulation of biomass, N, P, K and Mn, but tended to reduce the leaf area index and leaf biomass, and decreased the accumulation of Ca and Mg.     

中短轮伐期杨树纸浆林LAI及生物生产力的研究

研究了中短轮伐期杨树纸浆林ＬＡＩ的动态变化,ＬＡＩ与透光率的关系,林分的生物生产力及林分的经济生物量生产．结果表明,ＬＡＩ随林龄和密度的增大而递增,３个杨树无性系间是ＮＬ８０３５１＞Ｉ６９＞Ｉ７２;ＬＡＩ与透光率的关系可用Ｍ．Ｍｏｎｓｉ和Ｔ．Ｓａｅｋｉ修正的消光方程来描述,消光系数为０．８１８;林分地上部分年净生物生产力与ＬＡＩ密切相关,其关系可用指数函数来表达;４年生时,不同密度及不同无性系间林分的生物生产力、生物量分配模式存在较大差异,以１１１１株·ｈｍ－２林分的生产力最高,约为５００株·ｈｍ－２林分的１４倍．３个无性系中以ＮＬ８０３５１最高,Ｉ７２杨最低;林分地上部分干木质部、枝木质部及皮的干物质累积趋势可用Ｒｉｃｈａｒｄｓ方程描述．４年生时,作为化学浆材的林分经济生物量是１１１１＞８３３＞６２５＞５００株·ｈｍ－２,作为磨木浆材的林分经济生物量是５００＞６２５＞８３３＞１１１１株·ｈｍ－２．无性系间均以ＮＬ８０３５１的林分经济生物量最高,Ｉ７２杨最低．     

The bovine QTL viewer: a web accessible database of bovine Quantitative Trait Loci

Background  

Many important agricultural traits such as weight gain, milk fat content and intramuscular fat (marbling) in cattle are quantitative traits. Most of the information on these traits has not previously been integrated into a genomic context. Without such integration application of these data to agricultural enterprises will remain slow and inefficient. Our goal was to populate a genomic database with data mined from the bovine quantitative trait literature and to make these data available in a genomic context to researchers via a user friendly query interface.     

Biomass for energy in the European Union - a review of bioenergy resource assessments

ABSTRACT: This paper reviews recent literature on bioenergy potentials in conjunction with available biomass conversion technologies. The geographical scope is the European Union, which has set a course for long term development of its energy supply from the current dependence on fossil resources to a dominance of renewable resources. A cornerstone in European energy policies and strategies is biomass and bioenergy. The annual demand for biomass for energy is estimated to increase from the current level of 5.7 EJ to 10.0 EJ in 2020. Assessments of bioenergy potentials vary substantially due to methodological inconsistency and assumptions applied by individual authors. Forest biomass, agricultural residues and energy crops constitute the three major sources of biomass for energy, with the latter probably developing into the most important source over the 21st century. Land use and the changes thereof is a key issue in sustainable bioenergy production as land availability is an ultimately limiting factor.     

Dissecting a wheat QTL for yield present in a range of environments: from the QTL to candidate genes

Previous studies with 95 bread wheat doubled haploid lines (DHLs) from the cross Chinese Spring (CS)xSQ1 trialled over 24 yearxtreatmentxlocations identified major yield quantitative trait loci (QTLs) in homoeologous locations on 7AL and 7BL, expressed mainly under stressed and non-stressed conditions, respectively. SQ1 and CS contributed alleles increasing yield on 7AL and 7BL, respectively. The yield component most strongly associated with these QTLs was grains per ear. Additional results which focus on the 7AL yield QTL are presented here. Trials monitoring agronomic, morphological, physiological, and anatomical traits revealed that the 7AL yield QTL was not associated with differences in flowering time or plant height, but with significant differences in biomass at maturity and anthesis, biomass per tiller, and biomass during tillering. In some trials, flag leaf chlorophyll content and leaf width at tillering were also associated with the QTL. Thus, it is likely that the yield gene(s) on 7AL affects plant productivity. Near-isogenic lines (NILs) for the 7AL yield QTL with CS or SQ1 alleles in an SQ1 background showed the SQ1 allele to be associated with >20% higher yield per ear, significantly higher flag leaf chlorophyll content, and wider flag leaves. Epidermal cell width and distance between leaf vascular bundles did not differ significantly between NILs, so the yield-associated gene may influence the number of cell files across the leaf through effects on cell division. Interestingly, comparative mapping with rice identified AINTEGUMENTA and G-protein subunit genes affecting lateral cell division at locations homologous to the wheat 7AL yield QTL.     

Assessment of soil nitrogen and phosphorous availability under elevated CO2 and N-fertilization in a short rotation poplar plantation

Photosynthetic stimulation by elevated [CO₂] is largely regulated by nitrogen and phosphorus availability in the soil. During a 6 year Free Air CO₂ Enrichment (FACE) experiment with poplar trees in two short rotations, inorganic forms of soil nitrogen, extractable phosphorus, microbial and total nitrogen were assessed. Moreover, in situ and potential nitrogen mineralization, as well as enzymatic activities, were determined as measures of nutrient cycling. The aim of this study was to evaluate the effects of elevated [CO₂] and fertilization on: (1) N mineralization and immobilization processes; (2) soil nutrient availability; and (3) soil enzyme activity, as an indication of microbial and plant nutrient acquisition activity. Independent of any treatment, total soil N increased by 23% in the plantation after 6 years due to afforestation. Nitrification was the main process influencing inorganic N availability in soil, while ammonification being null or even negative. Ammonium was mostly affected by microbial immobilization and positively related to total N and microbial biomass N. Elevated [CO₂] negatively influenced nitrification under unfertilised treatment by 44% and consequently nitrate availability by 30% on average. Microbial N immobilization was stimulated by [CO₂] enrichment and probably enhanced the transformation of large amounts of N into organic forms less accessible to plants. The significant enhancement of enzyme activities under elevated [CO₂] reflected an increase in nutrient acquisition activity in the soil, as well as an increase of fungal population. Nitrogen fertilization did not influence N availability and cycling, but acted as a negative feed-back on phosphorus availability under elevated CO₂.     

The potential for short rotation energy forestry on restored landfill caps

This review examines the potential for producing biomass on restored landfills using willow and poplar species in short rotation energy forestry. In southern England, the potential production may be about 20 t ha(-1) of dry stem wood annually. However, actual yields are likely to be constrained by detrimental soil conditions, including shallow depth, compaction, low water holding capacity and poor nutritional status. These factors will affect plant growth by causing drought, waterlogging, poor soil aeration and nutritional deficiencies. Practical solutions to these problems include the correct placement and handling of the agricultural cap material, soil amelioration using tillage and the addition of organic matter (such as sewage sludge), irrigation (possibly using landfill leachate), the installation of drainage and the application of inorganic fertilizers. The correct choice of species and clone, along with good site management are also essential if economically viable yields are to be obtained. Further investigations are required to determine the actual yields that can be obtained on landfill sites using a range of management inputs.     

QTL mapping for yield and yield contributing traits in two mapping populations of bread wheat

In bread wheat, single-locus and two-locus QTL analyses were conducted for seven yield and yield contributing traits using two different mapping populations (P I and P II). Single-locus QTL analyses involved composite interval mapping (CIM) for individual traits and multiple-trait composite interval mapping (MCIM) for correlated yield traits to detect the pleiotropic QTLs. Two-locus analyses were conducted to detect main effect QTLs (M-QTLs), epistatic QTLs (E-QTLs) and QTL × environment interactions (QE and QQE). Only a solitary QTL for spikelets per spike was common between the above two populations. HomoeoQTLs were also detected, suggesting the presence of triplicate QTLs in bread wheat. Relatively fewer QTLs were detected in P I than in P II. This may be partly due to low density of marker loci on P I framework map (173) than in P II (521) and partly due to more divergent parents used for developing P II. Six QTLs were important which were pleiotropic/coincident involving more than one trait and were also consistent over environments. These QTLs could be utilized efficiently for marker assisted selection (MAS).     

Correspondence of ectomycorrhizal diversity and colonisation of willows (Salix spp.) grown in short rotation coppice on arable sites and adjacent natural stands

Willows (Salix spp.) are mycorrhizal tree species sometimes cultivated as short rotation coppice (SRC) on arable sites for energy purposes; they are also among the earliest plants colonising primary successional sites in natural stands. The objective of this study was to analyse the degree of colonisation and diversity of ectomycorrhizal (EM) communities on willows grown as SRC in arable soils and their adjacent natural or naturalized stands. Arable sites usually lack ectomycorrhizal host plants before the establishment of SRC, and adjacent natural or naturalized willow stands were hypothesized to be a leading source of ectomycorrhizal inoculum for the SRC. Three test sites including SRC stands (Salix viminalis, Salix dasyclados, and Salix schwerinii) and adjacent natural or naturalized (Salix caprea, Salix fragilis, and Salix?×?mollissima) stands in central Sweden were investigated on EM colonisation and morphotypes, and the fungal partners of 36 of the total 49 EM fungi morphotypes were identified using molecular tools. The frequency of mycorrhizas in the natural/naturalized stands was higher (two sites) or lower (one site) than in the corresponding cultivated stands. Correspondence analysis revealed that some EM taxa (e.g. Agaricales) were mostly associated with cultivated willows, while others (e.g. Thelephorales) were mostly found in natural/naturalized stands. In conclusion, we found strong effects of sites and willow genotype on EM fungi formation, but poor correspondence between the EM fungi abundance and diversity in SRC and their adjacent natural/naturalized stands. The underlying mechanism might be selective promotion of some EM fungi species by more effective spore dispersal.     

Impacts of nitrogen fertilisation and coppicing on total and heterotrophic soil CO2 efflux in a short rotation poplar plantation

Short rotation forests can serve as sources of renewable energy and possibly for soil C storage. However, the high frequency of management practices and the fertilisation could reduce C storage into the soil, by increasing CO₂ emissions and annulling the potential of C sequestration. The objectives of this work were to evaluate the impacts of coppicing and fertilisation on total soil CO₂ efflux, soil heterotrophic processes and consequent changes of soil C storage in a short rotation poplar plantation. Field soil CO₂ efflux, heterotrophic soil CO₂ efflux and soil organic C were compared before and after coppicing. Temporal dynamics of fine root biomass and water-soluble carbon after coppicing were also analysed. Coppicing increased total soil CO₂ efflux by more than 50%, while heterotrophic soil CO₂ efflux remained unchanged. Nevertheless, an increase in total organic carbon was observed as a result of above and belowground litter inputs, as well as root re-growth and exudation. This trend was more evident in fertilised soils due to lower heterotrophic and autotrophic soil CO₂ effluxes. Fertilisation can reduce the increase of CO₂ emissions after coppicing. Although soil organic C storage increased, the accumulation of labile fractions may trigger microbial respiration in the following years.     

Allometric Biomass,Biomass Expansion Factor and Wood Density Models for the OP42 Hybrid Poplar in Southern Scandinavia

Biomass and biomass expansion factor functions are important in wood resource assessment, especially with regards to bioenergy feedstocks and carbon pools. We sampled 48 poplar trees in seven stands with the purpose of estimating allometric models for predicting biomass of individual tree components, stem-to-aboveground biomass expansion factors (BEF) and stem basic densities of the OP42 hybrid poplar clone in southern Scandinavia. Stand age ranged from 3 to 31 years, individual tree diameter at breast height (dbh) from 1.2 to 41 cm and aboveground tree biomass from 0.39 to 670 kg. Models for predicting total aboveground leafless, stem and branch biomass included dbh and tree height as predictor variables and explained more than 97 % of the total variation. The BEF was approaching 2.0 for the smallest trees but declined with increasing tree size and stabilized around 1.2 for trees with dbh >10 cm. Average stem basic density was more than 400 kg m^?3 for the smallest trees but declined with increasing tree height and stabilized around 355 kg m^?3, at a tree height of about 20 m. Existing biomass functions from the literature all underestimated the measured sample tree biomass. Possible explanations include not only differences in competition among trees in the examined stands and site conditions but also differences in sampling procedures. We observed that basic density increased with height above the ground. This trend may have led to the observed underestimation by existing biomass functions including only few samples from the lower end of the stems.     

Quantitative Trait Loci (QTL) and Mendelian Trait Loci (MTL) Analysis in Prunus: a Breeding Perspective and Beyond

Trait loci analysis, a classic procedure in quantitative (quantitative trait loci, QTL) and qualitative (Mendelian trait loci, MTL) genetics, continues to be the most important approach in studies of gene labeling in Prunus species from the Rosaceae family. Since 2011, the number of published Prunus QTLs and MTLs has doubled. With increased genomic resources, such as whole genome sequences and high-density genotyping platforms, trait loci analysis can be more readily converted to markers that can be directly utilized in marker-assisted breeding. To provide this important resource to the community and to integrate it with other genomic, genetic, and breeding data, a global review of the QTLs and MTLs linked to agronomic traits in Prunus has been performed and the data made available in the Genome Database for Rosaceae. We describe detailed information on 760 main QTLs and MTLs linked to a total of 110 agronomic traits related to tree development, pest and disease resistance, flowering, ripening, and fruit and seed quality. Access to these trait loci enables the application of this information in the post-genomic era, characterized by the availability of a high-quality peach reference genome and new high-throughput DNA and RNA analysis technologies.     

QTL analysis for yield components and kernel-related traits in maize across multi-environments

Huangzaosi, Qi319, and Ye478 are foundation inbred lines widely used in maize breeding in China. To elucidate genetic base of yield components and kernel-related traits in these elite lines, two F_2:3 populations derived from crosses Qi319?×?Huangzaosi (Q/H, 230 families) and Ye478?×?Huangzaosi (Y/H, 235 families), as well as their parents were evaluated in six environments including Henan, Beijing, and Xinjiang in 2007 and 2008. Correlation and hypergeometric probability function analyses showed the dependence of yield components on kernel-related traits. Three mapping procedures were used to identify quantitative trait loci (QTL) for each population: (1) analysis for each of the six environments, (2) joint analysis for each of the three locations across 2?years, and (3) joint analysis across all environments. For the eight traits measured, 90, 89, and 58 QTL for Q/H, and 72, 76, and 51 QTL for Y/H were detected by the three QTL mapping procedures, respectively. About 70% of the QTL from Q/H and 90% of the QTL from Y/H did not show significant QTL?×?environment interactions in the joint analysis across all environments. Most of the QTL for kernel traits exhibited high stability across 2?years at the same location, even across different locations. Seven major QTL detected under at least four environments were identified on chromosomes 1, 4, 6, 7, 9, and 10 in the populations. Moreover, QTL on chr. 1, chr. 4, and chr. 9 were detected in both populations. These chromosomal regions could be targets for marker-assisted selection, fine mapping, and map-based cloning in maize.     

Markers associated with a QTL for grain yield in wheat under drought

Drought is a major abiotic stress that adversely affects wheat production in many regions of the world. The objective of this study was to identify quantitative trait loci (QTL) controlling grain yield and yield components under reduced moisture. A cross between common wheat cultivars ‘Dharwar Dry’ (drought tolerant) and ‘Sitta’ was the source of one hundred twenty-seven recombinant inbred lines evaluated for two-seasons in a field under differing soil moisture regimes in Ciudad Obregon, Sonora, Mexico. An SSR/EST-STS marker map was constructed and a grain yield QTL on the proximal region of chromosome 4AL was found to have a significant impact on performance under reduced moisture. This region was associated with QTL for grain yield, grain fill rate, spike density, grains m⁻², biomass production, biomass production rate, and drought susceptibility index (DSI). Molecular markers associated with these traits explained 20, 33, 15, 23, 30, 26, and 41% of phenotypic variation, respectively on chromosome 4A. Microsatellite locus Xwmc89 was associated with all significant QTL covering a 7.7 centiMorgans (cM) region and generally explained the greatest proportion of phenotypic variation. The alleles associated with enhanced performance under drought stress were contributed by Dharwar Dry. Microsatellite marker wmc89 may be useful for marker assisted selection to enhance drought tolerance.     

A intervarietal genetic map and QTL analysis for yield traits in wheat

A new genetic linkage map was constructed based on recombinant inbred lines (RILs) derived from the cross between the Chinese winter wheat (Triticum aestivum L.) varieties, Chuang 35050 and Shannong 483 (ChSh). The map included 381 loci on all the wheat chromosomes, which were composed of 167 SSR, 94 EST-SSR, 76 ISSR, 26 SRAP, 15 TRAP, and 3 Glu loci. This map covered 3636.7 cM with 1327.7 cM (36.5%), 1485.5 cM (40.9%), and 823.5 cM (22.6%) for A, B, and D genome, respectively, and contained 13 linkage gaps. Using the RILs and the map, we detected 46 putative QTLs on 12 chromosomes for grain yield (GY) per m², thousand-kernel weight (TKW), spike number (SN) per m², kernel number per spike (KNS), sterile spikelet number per spike (SSS), fertile spikelet number per spike (FSS), and total spikelet number per spike (TSS) in four environments. Each QTL explained 4.42–70.25% phenotypic variation. Four QTL cluster regions were detected on chromosomes 1D, 2A, 6B, and 7D. The most important QTL cluster was located on chromosome 7D near the markers of Xwmc31, Xgdm67, and Xgwm428, in which 8 QTLs for TKW, SN, SSS and FSS were observed with very high contributions (27.53–67.63%).     

QTL consistency and meta-analysis for grain yield components in three generations in maize

Grain yield is the most important and complex trait in maize. In this study, a total of 258 F₉ recombinant inbred lines (RIL), derived from a cross between dent corn inbred Dan232 and popcorn inbred N04, were evaluated for eight grain yield components under four environments. Quantitative trait loci (QTL) and their epistatic interactions were detected for all traits under each environment and in combined analysis. Meta-analysis was used to integrate genetic maps and detected QTL across three generations (RIL, F_2:3 and BC₂F₂) derived from the same cross. In total, 103 QTL, 42 pairs of epistatic interactions and 16 meta-QTL (mQTL) were detected. Twelve out of 13 QTL with contributions (R ²) over 15% were consistently detected in 3–4 environments (or in combined analysis) and integrated in mQTL. Only q100GW-7-1 was detected in all four environments and in combined analysis. 100qGW-1-1 had the largest R ² (19.3–24.6%) in three environments and in combined analysis. In contrast, 35 QTL for 6 grain yield components were detected in the BC₂F₂ and F_2:3 generations, no common QTL across three generations were located in the same marker intervals. Only 100 grain weight (100GW) QTL on chromosome 5 were located in adjacent marker intervals. Four common QTL were detected across the RIL and F_2:3 generations, and two between the RIL and BC₂F₂ generations. Each of five important mQTL (mQTL7-1, mQTL10-2, mQTL4-1, mQTL5-1 and mQTL1-3) included 7–12 QTL associated with 2–6 traits. In conclusion, we found evidence of strong influence of genetic structure and environment on QTL detection, high consistency of major QTL across environments and generations, and remarkable QTL co-location for grain yield components. Fine mapping for five major QTL (q100GW-1-1, q100GW-7-1, qGWP-4-1, qERN-4-1 and qKR-4-1) and construction of single chromosome segment lines for genetic regions of five mQTL merit further studies and could be put into use in marker-assisted breeding.