Silencing jasmonate signalling and jasmonate-mediated defences reveals different survival strategies between two Nicotiana attenuata accessions

To determine the impact of genotypic variation in secondary metabolite production on antiherbivore resistance and plant fitness, we genetically silenced biosynthetic genes for nicotine, trypsin proteinase inhibitors (TPI), and jasmonate (JA) production in two accessions of Nicotiana attenuata : one from Utah (UT) which responds to herbivory with JA-induced nicotine and TPI production, and one from Arizona (AZ) which is TPI-deficient but also produces JA-induced nicotine. Transient silencing of JA biosynthesis increased Manduca sexta larval growth on wild type (WT) plants of both accessions, but not on TPI-deficient UT or nicotine-deficient AZ lines, demonstrating that JA-mediated resistance to M. sexta requires TPIs in the UT and nicotine in the naturally TPI-deficient AZ accession. When transplanted into a native UT population, AZ and UT plants, rendered equally able or unable to produce nicotine and TPIs by stable transformation, received significantly different levels of herbivory. Both accessions differed in their resistance depending on the type of herbivores: resistance to rare, voracious herbivores (Saltatoria and Mammalia) was greater in AZ than UT lines, and dependent on nicotine production, while resistance to small, abundant herbivores (Coleoptera and Thysanoptera) was greater in UT lines, and dependent on TPI production. AZ lines produced more flowers and seed capsules than UT lines independently of TPI production costs. This fitness advantage was lost when accessions did not produce nicotine. We conclude that these two accessions have developed different survival strategies and thus differ in the cost-benefit functions of their JA-mediated defences.     

RNA-dependent RNA polymerase 6 is required for efficient hpRNA-induced gene silencing in plants

In plants, transgenes with inverted repeats are used to induce efficient RNA silencing, which is also frequently induced by highly transcribed sense transgenes. RNA silencing induced by sense transgenes is dependent on RNA-dependent RNA polymerase 6 (RDR6), which converts single-stranded (ss) RNA into double-stranded (ds) RNA. By contrast, it has been proposed that RNA silencing induced by self-complementary hairpin RNA (hpRNA) does not require RDR6, because the hpRNA can directly fold back on itself to form dsRNA. However, it is unclear whether RDR6 plays a role in hpRNA-induced RNA silencing by amplifying dsRNA to spread RNA silencing within the plant. To address the efficiency of hpRNA-induced RNA silencing in the presence or absence of RDR6, Wild type (WT, Col-0) and rdr6-11 Arabidopsis thaliana lines expressing green fluorescent protein (GFP) were generated and transformed with a GFP-RNA interference (RNAi) construct. Whereas most GFP-RNAi-transformed WT lines exhibited almost complete silencing of GFP expression in the T1 generation, various levels of GFP expression remained among the GFP-RNAi-transformed rdr6-11 lines. Homozygous expression of GFP-RNAi in the T3 generation was not sufficient to induce complete GFP silencing in several rdr6-11 lines. Our results indicate that RDR6 is required for efficient hpRNA-induced RNA silencing in plants.     

Co(i)-ordinating defenses: NaCOI1 mediates herbivore- induced resistance in Nicotiana attenuata and reveals the role of herbivore movement in avoiding defenses

Arabidopsis and tomato plants mutated in the F-box protein COI1 mediating jasmonate (JA) responses are more susceptible to herbivores in laboratory trials, but the exact mechanisms of COI1-mediated resistance are not known. We silenced COI1 by transformation with an inverted repeat construct (ir-coi1) in Nicotiana attenuata, a plant the direct and indirect defenses of which against various herbivores have been well studied. ir-coi1 plants are male sterile and impaired in JA-elicited direct [nicotine, caffeoylputrescine and trypsin proteinase inhibitor (TPI) activity] and indirect (cis-alpha-bergamotene emission) defense responses; responses not elicited by JA treatment (ethylene production and flower TPI activity) were unaffected. Larvae of Manduca sexta, a common herbivore of N. attenuata, gained three times more mass feeding on ir-coi1 than on wild-type (WT) plants in glasshouse experiments. By regularly moving caterpillars to unattacked leaves of the same plant, we demonstrate that larvae on WT plants can grow and consume leaves as fast as those on ir-coi1 plants, a result that underscores the role of COI1 in mediating locally induced resistance in attacked leaves, and the importance of herbivore movement in avoiding the induced defenses of a plant. When transplanted into native habitats in the Great Basin Desert, ir-coi1 plants suffer greatly from damage by the local herbivore community, which includes herbivores not commonly found on N. attenuata WT plants. Choice assays with field-grown plants confirmed the increased attractiveness of ir-coi1 plants for both common and unusual herbivores. We conclude that NaCOI1 is essential for induced resistance in N. attenuata, and that ir-coi1 plants highlight the benefits of herbivore movement for avoiding induced defenses.     

Relaxation of selection with equalization of parental contributions in conservation programs: an experimental test with Drosophila melanogaster

Equalization of parental contributions is one of the most simple and widely recognized methods to maintain genetic diversity in conservation programs, as it halves the rate of increase in inbreeding and genetic drift. It has, however, the negative side effect of implying a reduced intensity of natural selection so that deleterious genes are less efficiently removed from the population with possible negative consequences on the reproductive capacity of the individuals. Theoretical results suggest that the lower fitness resulting from equalization of family sizes relative to that for free contribution schemes is expected to be substantial only for relatively large population sizes and after many generations. We present a long-term experiment with Drosophila melanogaster, comparing the fitness performance of lines maintained with equalization of contributions (EC) and others maintained with no management (NM), allowing for free matings and contributions from parents. Two (five) replicates of size N = 100 (20) individuals of each type of line were maintained for 38 generations. As expected, EC lines retained higher gene diversity and allelic richness for four microsatellite markers and a higher heritability for sternopleural bristle number. Measures of life-history traits, such as egg-to-adult viability, mating success, and global fitness declined with generations, but no significant differences were observed between EC and NM lines. Our results, therefore, provide no evidence to suggest that equalization of family sizes entails a disadvantage on the reproductive capacity of conserved populations in comparison with no management procedures, even after long periods of captivity.     

Resistance management in a native plant: nicotine prevents herbivores from compensating for plant protease inhibitors

Plants deploy chemical defenses in complex mixtures, which are thought to be adaptive, but experimental tests have used artificial diets rather than plants. Herbivore attack on Nicotiana attenuata rapidly increases the production and accumulation of trypsin proteinase inhibitors (TPI) and the toxic alkaloid nicotine. By transgenically silencing their respective biosynthetic genes, we were able to abolish TPI activity and reduce inducible nicotine by 85%. Nicotine production was not affected by silencing pi or vice versa, and transformation did not alter levels of other metabolites examined. Spodoptera exigua , a native generalist herbivore that can compensate for heterologous TPI expression, performed better on TPI- or nicotine-deficient plants compared with the wild-type. Because of a compensatory feeding response to TPI when nicotine is absent, larvae performed better on nicotine-deficient plants than they did on plants silenced in both defenses. The antifeedant toxin, nicotine, prevents this compensatory response. We conclude that N. attenuata counters an insect adaptation with a defensive synergism.     

Contrasted Fitness Costs of Docking and Antibacterial Constructs in the EE and EVida3 Strains Validates Two-Phase Anopheles gambiae Genetic Transformation System

The deployment of transgenic mosquitoes carrying genes for refractoriness to malaria has long been seen as a futuristic scenario riddled with technical difficulties. The integration of anti-malarial effector genes and a gene-drive system into the mosquito genome without affecting mosquito fitness is recognized as critical to the success of this malaria control strategy. Here we conducted detailed fitness studies of two Anopheles gambiae s.s. transgenic lines recently developed using a two-phase targeted genetic transformation system. In replicated cage-invasion experiments, males and females of the EE Phase-1 docking strain and EVida3 Phase-2 strain loaded with an antimicrobial peptide (AMP) expressed upon blood-feeding, were mixed with individuals of a recently-colonized strain of the Mopti chromosomal form. The experimental design enabled us to detect initial strain reproductive success differences, assortative mating and hybrid vigor that may characterize mosquito release situations. In addition, the potential fitness costs of the unloaded Phase-1 and loaded Phase-2 genetic constructs, independent of the strains’ original genetic backgrounds, were estimated between the 1^st instar larvae, pupae and adult stages over 10 generations. The Phase-1 unloaded docking cassette was found to have significantly lower allelic fitness relative to the wild type allele during larval development. However, overall genotypic fitness was comparable to the wild type allele across all stages leading to stable equilibrium in all replicates. In contrast, the Phase-2 construct expressing EVida3 disappeared from all replicates within 10 generations due to lower fitness of hemi- and homozygous larvae, suggesting costly background AMP expression and/or of the DsRed2 marker. This is the first study to effectively partition independent fitness stage-specific determinants in unloaded and loaded transgenic strains of a Phase-1–2 transformation system. Critically, the high fitness of the Phase-1 docking strain makes it the ideal model system for measuring the genetic load of novel candidate anti-malarial molecules in vivo.     

Determination of transgene repeat formation and promoter methylation in transgenic plants

The integration of transgenes into a plant host genome following Agrobacterium tumefaciens-mediated or direct transformation may occur as a single copy or in the form of tandem repeats. The latter has been associated with promoter methylation and silencing of transgenes. Thus, the early screening of such transgenic plants is desirable for ruling out future repeat-dependent transgene instability. We developed a simple PCR-based method in which primer pairs were specifically designed so that amplifications could only be obtained if the transgene was present in the form of multiple inserts in a transgenic line. The method was established using 35S-rolC transgenic aspen lines showing morphologically visible transgenic silencing. Later, it was possible to screen independent transgenic lines showing no visible marker gene expression. Furthermore, a method was developed in which positive PCR amplification was indicative of promoter methylation. The results were consistent and reproducible across different independent transgenic lines. The methods were quick, reliable, consistent and reproducible, and can be useful for routine screening of transgene silencing in lines derived from many different systems.     

Evolutionary ecology of Datura stramonium: genetic variation and costs for tolerance to defoliation

The incorporation of plant tolerance after damage as a new alternative to cope with herbivory, as opposed to resistance, opened new avenues for our understanding of coevolution between plants and herbivores. Although genetic variation on tolerance to defoliation has been detected in some species, few studies have been undertaken with nonagricultural species. In this study, we explore in the annual weed Datura stramonium the existence of genetic variation for tolerance and fitness costs of tolerance. To determine which fitness-related trait was responsible for possible differences in tolerance, growth rate, total flower and fruit production, and the number of seeds per fruit were recorded. Inbred line replicates of D. stramonium from a population of Mexico City were exposed to four defoliation levels (0%, 10%, 30%, and 70%). Our results from a greenhouse experiment using controlled genetic material (inbred lines) indicated that significant genetic variation for tolerance was detected across defoliation environments. Defoliation reduced plant fitness from 15% to 25% in the highest levels of defoliation. Differences on tolerance among inbred lines were accounted by a differential reduction in the proportion of matured fruits across defoliation levels (up to 20%). Within defoliation levels, significant genetic variation in plant fitness suggests that tolerance could be selected. The correlation between fitness values of inbred lines in two environments (with and without damage) was positive (rg = 0.77), but not significant, suggesting absence of fitness costs for tolerance. The finding of genetic variation on tolerance might be either due to differences among inbred lines in their capability to overcome foliar damage through compensation or due to costs incurred by inducing secondary metabolites. Our results indicate the potential for norms of reaction to be selected under a gradient of herbivory pressure and highlights the importance of dissecting induced from compensatory responses when searching for potential causes of genetic variation on tolerance.     

Modelling problems in conservation genetics using Drosophila: consequences of fluctuating population sizes

Many natural populations fluctuate widely in population size. This is predicted to reduce effective population size, genetic variation, and reproductive fitness, and to increase inbreeding. The effects of fluctuating population size were examined in small populations of Drosophila melanogaster of the same average size, but maintained using either fluctuating ( FPS ) or equal ( EPS ) population sizes.FPS lines were maintained using seven pairs and one pair in alternate generations, and EPS lines with four pairs per generation. Ten replicates of each treatment were maintained. After eight generations, FPS had a higher inbreeding coefficient than EPS (0.60 vs. 0.38), a lower average allozyme heterozygosity (0.068 vs. 0.131), and a much lower relative fitness (0.03 vs. 0.25). Estimates of effective population sizes for FPS and EPS were 3.8 and 7.9 from pedigree inbreeding, and 4.9 vs. 7.1 from changes in average heterozygosities, as compared to theoretical expectations of 3.3 vs. 8.0. Results were generally in accordance with theoretical predictions. Management strategies for populations of rare and endangered species should aim to minimize population fluctuations over generations.     

Sample size for detecting differentially expressed genes in microarray experiments

Background  

Microarray experiments are often performed with a small number of biological replicates, resulting in low statistical power for detecting differentially expressed genes and concomitant high false positive rates. While increasing sample size can increase statistical power and decrease error rates, with too many samples, valuable resources are not used efficiently. The issue of how many replicates are required in a typical experimental system needs to be addressed. Of particular interest is the difference in required sample sizes for similar experiments in inbred vs. outbred populations (e.g. mouse and rat vs. human).     

干旱胁迫对转PtPIP2;8基因84K杨苗木光合、生长和根系结构的影响

为研究水通道蛋白PtPIP2;8基因功能, 了解其不同表达水平的转基因84K杨(Populus alba × P. glandulossa)应对干旱胁迫的响应, 该文以转PtPIP2;8 84K杨抑制表达株系(抑制表达)、野生型(WT)和转PtPIP2;8 84K杨超表达株系(超表达)为试验材料, 测定PtPIP2;8表达水平、根系导度、光响应曲线、气体交换参数、生长及根系形态指标。结果显示: (1) WT植株PtPIP2;8仅在根系表达; 超表达植株PtPIP2;8除在根部显著表达外, 在茎和叶片中也显著表达; 抑制表达植株PtPIP2;8仅在根部有微量表达, 表达量分别是WT和超表达植株的1/20和1/80。(2)根系结构分析发现, 超表达植株总根长、总根表面积、总根体积、总根尖数显著低于WT和抑制表达植株, 根系导水率显著高于WT和抑制表达植株, 表明PtPIP2;8参与了植物根系水分运输, 提高了水分运输效率。(3)正常水分条件下, 抑制表达植株苗高、叶面积显著低于WT和超表达植株, 根冠比显著高于WT和超表达植株。干旱胁迫后, 抑制表达植株净光合速率(P_n)、气孔导度(G_s)下降幅度小, 仍能维持较高的P_n。气体交换参数显示抑制表达植株P_n、G_s日变化为“单峰”型, 属气孔因素引起的净光合速率下降;WT和超表达植株P_n、G_s日变化为“双峰”型, 干旱胁迫后, 抑制表达植株P_n略微下降, WT和超表达植株P_n均下降, 尤其是13:00、15:00下降显著, 表明WT和超表达植株对干旱胁迫更加敏感, 干旱对其影响更大。(4)干旱胁迫后, 抑制表达植株相对生长速率、总生物量降低的最少, 根冠比最高; 总根表面积、总根体积、总根尖数显著高于WT植株。表明PtPIP2;8直接参与水分运输并提高水分运输效率, 其转化影响了植株根系发育和生长。超表达植株根系发育的下降和叶面积的增大减弱了它的抗旱性, 而抑制表达植株矮小, 降低的叶面积, 增加的根系生长和根冠比提高了它的抗旱能力。从研究结果来看, 水通道蛋白提高了水分跨膜运输效率, 而非水通道蛋白导水机制对干旱有较强的耐受性。     

Effects of drought stress on photosynthesis,growth and root structure of transgenic PtPIP2;8 poplar 84K (Populus alba × P. glandulosa)

为研究水通道蛋白PtPIP2;8基因功能, 了解其不同表达水平的转基因84K杨(Populus alba × P. glandulossa)应对干旱胁迫的响应, 该文以转PtPIP2;8 84K杨抑制表达株系(抑制表达)、野生型(WT)和转PtPIP2;8 84K杨超表达株系(超表达)为试验材料, 测定PtPIP2;8表达水平、根系导度、光响应曲线、气体交换参数、生长及根系形态指标。结果显示: (1) WT植株PtPIP2;8仅在根系表达; 超表达植株PtPIP2;8除在根部显著表达外, 在茎和叶片中也显著表达; 抑制表达植株PtPIP2;8仅在根部有微量表达, 表达量分别是WT和超表达植株的1/20和1/80。(2)根系结构分析发现, 超表达植株总根长、总根表面积、总根体积、总根尖数显著低于WT和抑制表达植株, 根系导水率显著高于WT和抑制表达植株, 表明PtPIP2;8参与了植物根系水分运输, 提高了水分运输效率。(3)正常水分条件下, 抑制表达植株苗高、叶面积显著低于WT和超表达植株, 根冠比显著高于WT和超表达植株。干旱胁迫后, 抑制表达植株净光合速率(P_n)、气孔导度(G_s)下降幅度小, 仍能维持较高的P_n。气体交换参数显示抑制表达植株P_n、G_s日变化为“单峰”型, 属气孔因素引起的净光合速率下降;WT和超表达植株P_n、G_s日变化为“双峰”型, 干旱胁迫后, 抑制表达植株P_n略微下降, WT和超表达植株P_n均下降, 尤其是13:00、15:00下降显著, 表明WT和超表达植株对干旱胁迫更加敏感, 干旱对其影响更大。(4)干旱胁迫后, 抑制表达植株相对生长速率、总生物量降低的最少, 根冠比最高; 总根表面积、总根体积、总根尖数显著高于WT植株。表明PtPIP2;8直接参与水分运输并提高水分运输效率, 其转化影响了植株根系发育和生长。超表达植株根系发育的下降和叶面积的增大减弱了它的抗旱性, 而抑制表达植株矮小, 降低的叶面积, 增加的根系生长和根冠比提高了它的抗旱能力。从研究结果来看, 水通道蛋白提高了水分跨膜运输效率, 而非水通道蛋白导水机制对干旱有较强的耐受性。