An analysis of two Myosorex species (Soricidae) from the Early Pliocene site of Langebaanweg (West coast, South Africa) using geometric morphometrics, linear measurements, and non-metric characters

This represents the first study of the soricid community from the Early Pliocene site of Langebaanweg (LBW) which is represented by four species, two of which belong to the soricid genus Myosorex (Forest shrew). Using geometric morphometrics the two Myosorex fossil species are compared with each other, and the extant western and eastern Cape species: Myosorex varius, M. cafer and M. longicaudatus. In addition, the results from an analysis of a number of non-metric characters and linear measurements on the fossil species are presented. The mandibles of the fossil species are characterized by extremely broad teeth, ascending rami which are relatively gracile and differ in shape and size from modern species, and the existence of a number of primitive features of the mandibles and teeth. This evidence is interpreted as indicating that the two LBW Myosorex species represent an archaic lineage now extinct in southern Africa.     

Studies of fossil hyaenids: the genera Hyaenictis Gaudry and Chasmaporthetes Hay, with a reconsideration of the Hyaenidae of Langebaanweg, South Africa

The fossil hyaenids from Langebaanweg in South Africa are revised taxonomically using both morphological comparisons and measurement data. Ictilherium preforfex is found to be a synonym of Ikelohyaena abronia . Other hyaenid taxa in this fauna are Hyaenictitherium namaquensis, Chasmaporthetes australis and a new taxon similar to Chasmaporthetes australis in the size and shape of the M₁, trigonid and other characters, but differing from this taxon in having short P₃ relative to P₂, a smaller anterior accessory cusp on P₄ and M₂, present. This taxon has previously been referred to Euryboas sp***, but comparison with Eurasian hyaenids indicates that it shares diagnostic characters with Hyaenictis graeca , type species of the genus Hyaenictis . This genus is poorly known and its content is reviewed. We find that only the new species from Langebaanweg, formally described as Hyaenictis hendeyi sp. nov. , and the Spanish Hyaenictis almerai probably belong in this genus, while other taxa intermittently referred to Hyaenictis belong to other genera. Thus, neither Leecyaena bosei nor Chasmaporthetes silberbergi belong in Hyaenictis .     

Differences in Tooth Microwear of Populations of Caribou (<Emphasis Type="Italic">Rangifer tarandus</Emphasis>, Ruminantia,Mammalia) and Implications to Ecology,Migration, Glaciations and Dental Evolution

Tooth microwear was analyzed for a large sample of wild-shot barren-ground caribou (Rangifer tarandus groenlandicus) from the Kaminuriak population of eastern Canada. This sample was compared to the microwear of specimens from three Pleistocene localities in North America (Alaska) and western Europe (Caune de l’Arago in France and Salzgitter in Germany). The results show that the extant samples from eastern Canada have seasonal variation in microwear and presumably in diet. The differences in microwear between the various seasons may reflect a cyclic migration of the population within a year. The extinct population from Alaska has extremely blunt teeth (mesowear), as blunt as those of modern zebras and bison. This observation is corroborated by the lowest number of microwear pits. The findings are untypical, as most typical caribou teeth have sharper apices, and we interpret this as an indication of a local habitat that was different with animals feeding on non-typical vegetation. The combination of Rangifer from Caune de l’Arago and Salzgitter reveals a pattern in microwear variability. The Salzgitter is interglacial and shows a greater diversity of browsing (broad spectrum on average number of pits) than the glacial Caune de l’Arago. The interglacial population from Salzgitter is interesting because it shows several different types of browsing. Collectively all the Rangifer teeth show that diet of a brachydont taxon can vary across most of the dietary morphospace of ungulates as represented by tooth microwear. The three Pleistocene samples exhibit microwear that is different from the extant population in question. This observation implies that the recent diet of Rangifer has changed from the typical caribou diet in the past. This indicates dietary change within a species. This is important because it represents dietary evolution without changes in tooth morphology.     

Middle Stone Age human fossils from Die Kelders Cave 1, Western Cape Province, South Africa

Die Kelders Cave 1 (DK1) preserves a thick series of Middle Stone Age (MSA) horizons that date to a fairly short temporal interval sometime between about 60 and 80 ka ago. Twenty-seven human fossils, comprising 24 isolated teeth, a mandibular fragment, and two manual middle phalanges derive from seven of the 12 layers. The vast majority are children, and all may have come from sub-adult individuals. The entire assemblage may represent a minimum of ten individuals. As might be expected for teeth of such antiquity, most of the DK1 crowns tend to be large in comparison to recent African homologues. They tend to be smaller than, albeit more similar in size to, the teeth of penecontemporaneous archaic populations from Eurasia. The majority of morphological variants displayed by the DK1 crowns characterize the teeth of recent sub-Saharan Africans, and the DK1 crowns resemble those of recent Africans in a number of traits that have been used to define a sub-Saharan African regional complex. The morphological similarities between the DK1 MSA and recent African teeth, however, do not necessarily signify a close evolutionary relationship between them, because these crowns variants appear to be plesiomorphic.     

Epifaunistic arthropod parasites of the four-striped mouse, Rhabdomys pumilio, in the Western Cape Province, South Africa

Flea, lice, mite, and tick species associated with 510 Rhabdomys pumilio were collected at 9 localities in the Western Cape Province, South Africa. The aims of the study were first to quantify the species richness, prevalence, and relative mean intensity of infestation of epifaunistic arthropod species associated with R. pumilio, and second to determine temporal variations in the mean abundance of the parasitic arthropods. Each mouse was examined under a stereoscopic microscope and its parasites were removed, identified, and quantified. The epifaunal population was made up of more than 25,000 individuals and included 8 flea, 1 sucking louse, 11 mite, and 13 ixodid tick species. Female-biased sex ratios were noted for 9 (30%) of the ectoparasite species. Three undescribed mite and 1 undescribed tick species were recovered, and new locality records for 2 flea, the louse, and 2 mite species were documented. A phoretic host association between a nonparasitic mite species, Psylloglyphus uilenbergi kivuensis, and 3 flea species, Chiastopsylla rossi, Hypsophthalmus temporis, and Listropsylla agrippinae, was recorded. The mean abundance of the parasitic mite and insect species were higher during the cold wet season, whereas ticks were more numerous during the warm dry months. The large number of ectoparasite species on R. pumilio, a locally abundant and regionally widespread species, is of medical and veterinary importance particularly in relation to the transmission of pathogens such as Anaplasma marginale, Babesia caballi, and Babesia canis to domestic animals; Rickettsia conori; Yersinia pestis; and the viral disease Crimean-Congo hemorrhagic fever to humans.     

Duinefontein 2: an Acheulean site in the Western Cape Province of South Africa.

Excavations at Duinefontein (DFT) 2 near Cape Town, South Africa have recovered numerous stone artefacts and animal bones on an ancient surface sealed within iron-stained eolian sands. U-series analysis of an overlying calcrete places the sands before 150 ka ago, while the large mammal taxa imply an age between 400 and 200 ka ago. The artefacts include a classic Acheulean handaxe and probable biface shaping flakes that support this age estimate. The principal mammalian species are long-horned buffalo, black wildebeest, greater kudu, Cape zebra, and grysbok/steenbok, which imply a grass-and-bush mosaic instead of the historic small-leafed shrubland.Hippopotamus and reedbuck indicate that water stood nearby, probably in dune swales. The large mammal bones are mostly vertebrae and other axial elements, often in near-anatomical order. Both proximal and distal appendicular elements are rare. Bones with carnivore damage are common, but ones with stone tool marks are scarce. The sum suggests a water-edge attritional death site where people played a minimal role and carcasses were disarticulated mainly by carnivore feeding and by trampling. Stone tool marks tend to be equally rare at other Acheulean attritional death sites, and the implication may be that Acheulean people rarely obtained large mammals, whether by hunting or scavenging. Human scavengers at DFT2 would not have encountered a disproportionate number of distal (versus proximal) limb elements, and it follows that the tendency for distal elements to dominate many archeological assemblages need not reflect scavenging versus hunting. Even if DFT2 was not itself a locus of intense human activity, it provides a useful baseline for evaluating bone damage, skeletal part representation, and other variables at sites where people were deeply involved.     

Activity patterns of springhares from the Eastern Cape Province, South Africa

The activity patterns of springhares Pedetes capensis ( Rodentia: Pedetidae ) from the Eastern Cape Province, South Africa, were investigated by counting the number of springhares active above ground at regular intervals throughout the night at different times of the year and under different weather conditions and phases of the moon. A combination of time of year, time of night and level of illumination best explained springhare activity, accounting for 43% of the variation in springhare numbers. Springhare activity generally reached its peak soon after dark, thereafter remaining fairly constant throughout most of the night and only decreasing in the 2–4-h period before sunrise. On those nights when the moon either rose or set during the night, this pattern was modified by the level of illumination. Springhares responded to moonlight by reducing above-ground activity, shifting activity to dark, moonless periods of the night, and by reducing their use of open space. Except for extremes, other weather conditions had no significant effect on springhare activity.     

Diversity and distribution of nematodes associated with terrestrial slugs in the Western Cape Province of South Africa

A survey of nematodes associated with native and introduced species of terrestrial slugs was conducted in the Western Cape Province of South Africa, in order to gather new data regarding diversity and distribution. A total of 521 terrestrial slugs were collected from 35 localities throughout the Western Cape. All slugs were dissected and examined for the presence of internal nematodes. Extracted nematodes were identified using a combination of molecular (18S rRNA gene sequencing) and morphological techniques. Nematodes were found parasitizing slugs at 14 of the 35 sites examined, amounting to 40% of sample sites. Of all slugs, 6% were infected with nematodes. A total of seven species of nematode were identified in the province, including Agfa flexilis, Angiostoma sp., Phasmarhabditis sp. SA1, Phasmarhabditis sp. SA2, Caenorhabditis elegans, Panagrolaimus sp. and Rhabditis sp. Of these species, four were thought to be parasitic to slugs (A. flexilis, Angiostoma sp., Phasmarhabditis sp. SA1 and Phasmarhabditis sp. SA2), as opposed to forming necromenic or phoretic associations. Three new species of slug-parasitic nematode were identified during this study (Angiostoma sp., Phasmarhabditis sp. SA1 and Phasmarhabditis sp. SA2).     

Aspalathus crewiana sp. nov. (Crotalarieae,Fabaceae) from the Western Cape Province,South Africa

A new species, Aspalathus crewiana is described and illustrated. It is closely similar to A. lenticula in the strongly rostrate keel petals and thorny leaflets, but differs in the subulate, spine‐tipped bracts, bracteoles and calyx lobes, presence of a pseudo‐peduncle and larger flowers. The new species, like A. lenticula, is placed in the Terminales group of A. subgenus Aspalathus. It is known from only two localities in the Western Cape where it was collected in Swartland Granite Renosterveld.     

Acaulonopsis,a new moss genus of the Pottiaceae from Western Cape Province of South Africa,and comments on Vrolijkheidia

Abstract

A new genus, Acaulonopsis (Pottiaceae, Bryophyta), including two new species, A. fynbosensis and A. eureka, is described from the Western Cape Province of South Africa. Together with the similarly much reduced pottiaceous genus Acaulon, Acaulonopsis is unique in the family with a very short seta and spherical capsule, which lacks the apiculus found in other genera. The new genus is also distinguished by short plant stature, and a total of about five ovate leaves that clasp closely the capsules in nearly spherical leaf bases. Continuing bryological study of the fynbos region has recently resulted in a number of startling discoveries of bryophytes new to science and distinct at the genus level. A new combination is made for the South African endemic genus Vrolijkheidia (Pottiaceae) with discussion of its dimorphic habitus.     

Acacia saligna seed banks: Sampling methods and dynamics,Western Cape,South Africa

Acacia saligna is potentially the most damaging invasive species in the coastal lowlands of the south-western Cape. The gall rust fungus, Uromycladium tepperianum, has been highly successful as a biological control agent for A. saligna populations in South Africa and has effectively reduced density, canopy cover and seed production of the tree. However, concerns still remain about the soil-stored seed bank and knowledge of seed bank status and dynamics is crucial for effective management. This study evaluated the effectiveness of two different sampling methods in assessing the status of the seed bank, how the seed bank of A. saligna at two different sites varies over time and how these findings compare to findings of other seed bank studies of A. saligna across southern Africa. Even with the reduction in seed production caused by biological control, numbers of seed in the soil seed bank are high enough to maintain high levels of recruitment after management or natural disturbances. Both sampling methods (grid and random sampling) attempted were effective in assessing the vertical distribution of the seed bank and estimated the size of the seed bank to be within the same order of magnitude. However, random sampling is more effective in assessing seed bank size as it was found that the seed has a clumped horizontal distribution. The vertical distribution of seed in the seed bank was found to be influenced by soil properties. The largest portion of the seed bank is situated in the upper 10 cm of the soil profile and declines in size with depth.     

Pinnacle Point Cave 13B (Western Cape Province, South Africa) in context: The Cape Floral kingdom, shellfish, and modern human origins

Genetic and anatomical evidence suggests that Homo sapiens arose in Africa between 200 and 100ka, and recent evidence suggests that complex cognition may have appeared between ~164 and 75ka. This evidence directs our focus to Marine Isotope Stage (MIS) 6, when from 195-123ka the world was in a fluctuating but predominantly glacial stage, when much of Africa was cooler and drier, and when dated archaeological sites are rare. Previously we have shown that humans had expanded their diet to include marine resources by ~164ka (±12ka) at Pinnacle Point Cave 13B (PP13B) on the south coast of South Africa, perhaps as a response to these harsh environmental conditions. The associated material culture documents an early use and modification of pigment, likely for symbolic behavior, as well as the production of bladelet stone tool technology, and there is now intriguing evidence for heat treatment of lithics. PP13B also includes a later sequence of MIS 5 occupations that document an adaptation that increasingly focuses on coastal resources. A model is developed that suggests that the combined richness of the Cape Floral Region on the south coast of Africa, with its high diversity and density of geophyte plants and the rich coastal ecosystems of the associated Agulhas Current, combined to provide a stable set of carbohydrate and protein resources for early modern humans along the southern coast of South Africa during this crucial but environmentally harsh phase in the evolution of modern humans. Humans structured their mobility around the use of coastal resources and geophyte abundance and focused their occupation at the intersection of the geophyte rich Cape flora and coastline. The evidence for human occupation relative to the distance to the coastline over time at PP13B is consistent with this model.     

Risk factors of porcine cysticercosis in the Eastern Cape Province, South Africa

There is a high prevalence of Taenia solium taeniosis/cysticercosis in humans and pigs in the Eastern Cape Province (ECP) of South Africa. The objective of this study was to identify risk factors of porcine cysticercosis in select districts of the ECP. Data were collected in 2003 by interviewing 217 pig producers from the area. Blood samples were collected from 261 of their pigs, which were tested using two enzyme-linked immunosorbent assays (ELISA) for the presence of antibodies to cysticercosis. Frequencies of both owner- and pig-level characteristics were determined. For pig-level analysis, all bivariable and multivariable associations were determined using the surveylogistic procedure of the SAS/STAT? software to accommodate for the intraclass correlation that exists for clusters of pigs within one owner and for clusters of owners within a district. All tests for significance were performed at the α?=?0.05 level, and adjusted odds ratios (aOR) and 95% confidence intervals (CI) were determined. Among the respondents, 48% of their households lacked a latrine, 98% slaughtered pigs at home, and 99% indicated that meat inspection services were not available. On bivariable analysis, there was a significant association between porcine infection and district (p?=?0.003), breed (p?=?0.041) and the absence of a latrine (p?=?0.006). On multivariable analysis, the absence of a latrine was the only variable significantly associated with porcine infection (aOR?=?1.89; 95% CI?=?1.07, 3.35) (p?=?0.028). The increased odds of porcine infection with households lacking a latrine contributes to our understanding of the transmission of this parasite in the ECP. Determining and addressing the risk factors for T. solium infection can potentially lower the very high prevalence in humans and pigs in this endemic area.     

Middle and Later Stone Age large mammal and tortoise remains from Die Kelders Cave 1, Western Cape Province, South Africa

Die Kelders Cave 1, South Africa, has provided more than 150,000 taxonomically identifiable mammal and tortoise bones from Middle Stone Age (MSA) and Later Stone Age (LSA) deposits. Cape dune mole-rats dominate the mammal sample, and they appear to have been accumulated mainly by people during the LSA occupation and mainly by eagle owls in the MSA. In sharp contrast to the LSA fauna, the MSA sample contains extralimital ungulates that imply relatively moist, grassy conditions. The large mean size of the MSA mole-rats also points to greater humidity, while the large size of the gray mongooses implies cooler temperatures. The sum supports luminescence and ESR dates that place the MSA occupation within the early part of the Last Glaciation (global isotope stage 4). The Die Kelders ungulate bones support those from Klasies River Mouth in suggesting that MSA people obtained dangerous terrestrial prey much less frequently than their LSA successors, probably because MSA people lacked the bow and arrow and other projectile weapons. The Die Kelders tortoise bones constrain the extent of climatic change, since their abundance indicates that warm, dry days remained common, at least seasonally. The tortoises tend to be much larger in the MSA layers than in the LSA ones, suggesting that MSA people collected tortoises less intensively, probably because MSA populations were relatively sparse.     

Phylogeography of the Cape velvet worm (Onychophora: Peripatopsis capensis) reveals the impact of Pliocene/Pleistocene climatic oscillations on Afromontane forest in the Western Cape, South Africa

Habitat specialists such as soft-bodied invertebrates characterized by low dispersal capability and sensitivity to dehydration can be employed to examine biome histories. In this study, the Cape velvet worm (Peripatopsis capensis) was used to examine the impacts of climatic oscillations on historical Afromontane forest in the Western Cape, South Africa. Divergence time estimates suggest that the P. capensis species complex diverged during the Pliocene epoch. This period was characterized by dramatic climatic and topographical change. Subsequently, forest expansion and contraction cycles led to diversification within P. capensis. Increased levels of genetic differentiation were observed along a west-to-south-easterly trajectory because the south-eastern parts of the Cape Fold Mountain chain harbour larger, more stable fragments of forest patches, have more pronounced habitat heterogeneity and have historically received higher levels of rainfall. These results suggest the presence of three putative species within P. capensis, which are geographically discreet and genetically distinct.     

The mammalian fauna associated with an archaic hominin skullcap and later Acheulean artifacts at Elandsfontein, Western Cape Province, South Africa

The Elandsfontein site, Western Cape Province, South Africa, is well known for an archaic hominin skullcap associated with later Acheulean artifacts. The site has also provided nearly 13,000 mammalian bones that can be identified to skeletal part and taxon. The assemblage derives from 49 species, 15 of which have no historic descendants. Comparisons to radiometrically dated faunas in eastern Africa indicate an age between 1 million and 600 thousand years ago. Unique features of the fauna, including the late occurrence of a dirk-toothed cat and a sivathere, may reflect its geographic origin in a region that was notable historically for its distinctive climate and high degree of biotic endemism. Together, taxonomic composition, geomorphic setting, and pollen extracted from coprolites indicate the proximity of a large marsh or pond, maintained by a higher water table. The small average size of the black-backed jackals implies relatively mild temperatures. The sum of the evidence places bone accumulation during one of the mid-Pleistocene interglacials that were longer and cooler than later ones, including the Holocene. The geomorphic context of the fauna presents no evidence for catastrophe, and most deaths probably resulted from attritional factors that disproportionately killed the young and old. However, only the dental-age profile of long-horned buffalo supports this directly. Field collection methods biased skeletal-part representation, but originally, it probably resembled the pattern in the younger, marsh-edge Acheulean occurrence at Duinefontein 2, 45 km to the south. Excavation there exposed multiple vertebral spreads, which probably mark carcasses from which hominins or large carnivores removed the meatier elements. Bone damage at both sites suggests that, despite abundant artifacts, hominins were much less important than carnivores in the bone accumulation. Together with limited observations from other sites, Elandsfontein and Duinefontein provisionally suggest that Acheulean-age hominins obtained few large mammals, whether by hunting or scavenging.     

Age-related differences in abundance and habitat occupation of Steppe Buzzards,Buteo buteo vulpinus,in the Western Cape Province,South Africa

Linear densities of Steppe Buzzards, Buteo buteo, were studied along roads at the southernmost edge of the nonbreeding range in the Western Cape Province, South Africa. Adults arrived before first-year birds; peak populations of the former occurred from December to February, and of the latter from January onwards. Except during periods with rapidly changing numbers during arrival and departure, the proportion of first-year birds in three different areas was negatively related to the density of adults. This may be the result of competitive exclusion by adults, or of age-related differences in habitat preference. Adults dominated first-year birds at hunting perches. First-year birds were most frequently found in more closed habitat, where they attempted to kleptoparasitize adults in 18% of all observed instances of prey mantling.     

Annesorhiza asparagoides (Apiaceae), a new species from the Cederberg Mountains, Western Cape Province, South Africa

A highly localised new species from the Cederberg Mountains near Wuppertal in the Western Cape Province is described. Annesorhiza asparagoides B.-E. Van Wyk, collected for the first time in 2009, differs from all other species of Annesorhiza (and the closely related Chamarea) in the unusual leaf structure, with crowded, subsessile, acicular leaf segments, resulting in dense, bottlebrush-like pinnae. The new species has a cluster of 10 or more slender roots, small (< 150 mm long), sparsely hairy leaves and small (± 8 mm long), oblong, conspicuously ribbed, homomericarpic fruits.     

An ethnobotanical survey of the Agter–Hantam, Northern Cape Province, South Africa

The use of a rapid appraisal methodology, followed by a new approach that we refer to as the Matrix Method, has revealed a wealth of traditional knowledge on useful plants amongst people of Khoi–San decent in the Agter–Hantam, Calvinia district, Northern Cape Province of South Africa. The data include 14 new species records of useful plants; 20 new vernacular names and 99 new uses for 46 of the plant species, showing that Khoi–San ethnobotany is still incompletely recorded and that there is an urgent need to document this wealth of traditional knowledge before it is lost forever. This article also introduces two new terms — the Ethnobotanical Knowledge Index (EKI), a quantitative measure of a person's knowledge of local plant use (value between 0 and 1), and the Species Popularity Index (SPI), a quantitative measure of the importance or popularity of each species (value between 0 and 1). In the Agter–Hantam, the EKI varied from 0.20 to 0.93 in older people but even young children had EKI values of 0.27. The best known and most popular indigenous useful plants in the Agter–Hantam are Aloe microstigma (a new species record, with a SPI of 0.97), Hoodia gordonii (SPI = 0.94), Microloma sagittatum (0.94), Sutherlandia frutescens (0.92), Quaqua incarnata (0.92) and Galenia africana (0.85). The new quantitative method will allow for direct comparisons of the preservation of traditional plant knowledge and the importance of various plants species in different communities.