Development and Application of a Predictive Model of Freshwater Fish Assemblage Composition to Evaluate River Health in Eastern Australia

Multivariate predictive models are widely used tools for assessment of aquatic ecosystem health and models have been successfully developed for the prediction and assessment of aquatic macroinvertebrates, diatoms, local stream habitat features and fish. We evaluated the ability of a modelling method based on the River InVertebrate Prediction and Classification System (RIVPACS) to accurately predict freshwater fish assemblage composition and assess aquatic ecosystem health in rivers and streams of south-eastern Queensland, Australia. The predictive model was developed, validated and tested in a region of comparatively high environmental variability due to the unpredictable nature of rainfall and river discharge. The model was concluded to provide sufficiently accurate and precise predictions of species composition and was sensitive enough to distinguish test sites impacted by several common types of human disturbance (particularly impacts associated with catchment land use and associated local riparian, in-stream habitat and water quality degradation). The total number of fish species available for prediction was low in comparison to similar applications of multivariate predictive models based on other indicator groups, yet the accuracy and precision of our model was comparable to outcomes from such studies. In addition, our model developed for sites sampled on one occasion and in one season only (winter), was able to accurately predict fish assemblage composition at sites sampled during other seasons and years, provided that they were not subject to unusually extreme environmental conditions (e.g. extended periods of low flow that restricted fish movement or resulted in habitat desiccation and local fish extinctions).     

Fish production in the Warta River,Poland: a preimpoundment study

The total mean biomass and production of fish populations were estimated at 80–116 kg ha^–1 and 135–164 kg ha^–1 yr^–1, respectively, at two sites of a large alluvial river (the Warta River, Poland). In comparison with data for two large, temperate zone rivers (Thames, Pilica) the present values are intermediate, as is the degree of eutrophication in the rivers' water.     

Fish larvae, growth and biomass relationships in an Australian arid zone river: links between floodplains and waterholes

1. Floodplain inundation provides many benefits to fish assemblages of floodplain river systems, particularly those with a predictable annual flood pulse that drives yearly peaks in fish production. In arid‐zone rivers, hydrological patterns are highly variable and the influence of irregular floods on fish production and floodplain energy subsidies may be less clear‐cut. To investigate the importance of floodplain inundation to a dryland river fish assemblage, we sampled fish life stages on the floodplain of Cooper Creek, an Australian arid‐zone river. Sampling was focused around Windorah during a major flood in January 2004 and in isolated waterholes in March 2004 following flood drawdown. 2. Of the 12 native species known to occur in this region, 11 were present on the floodplain, and all were represented by at least two of three life‐stages – larvae, juveniles or adult fish. Late stage larvae of six fish species were found on the floodplain. There were site‐specific differences in larval species assemblages, individual species abundances and larval distribution patterns among floodplain sites. 3. Significant growth was evident on the floodplain, particularly by larval and juvenile fish, reflecting the combination of high water temperatures and shallow, food rich habitats provided by the relatively flat floodplain. 4. Low variation in biomass, species richness and presence/absence of juvenile and adult fish across four floodplain sites indicates consistently high fish productivity across an extensive area. 5. Similarities and differences in fish biomass between the floodplain and isolated post‐flood waterholes suggest high rates of biomass transfer (involving the most abundant species) into local waterholes and, potentially, biomass transfer by some species to other waterholes in the catchment during floodplain inundation and after floods recede. 6. The high concentration of fish on this shallow floodplain suggests it could be a key area of high fish production that drives a significant proportion of waterhole productivity in the vicinity. The Windorah floodplain provides favourable conditions necessary for the spawning of some species and juvenile recruitment of the majority of species. It is also appears to be a significant conduit for the movements of fish that underpin high genetic similarity, hence population mixing, of many species throughout the Cooper Creek catchment. The high floodplain fish production in turn provides a significant energy subsidy to waterholes after floodwaters recede. 7. The identification of key sites of high fish production, such as the Windorah floodplain, may be important from a conservation perspective. Key management principles should be: maintenance of the natural flooding regime; identification of the most productive floodplain areas; and maintenance of their connectivity to anastomosing river channels and the remnant aquatic habitats that ultimately sustain this fish assemblage through long‐term dry/drought and flood cycles.     

Comparisons between the age structures, growth and reproductive biology of two co-occurring sillaginids, Sillago robusta and S. bassensis, in temperate coastal waters of Australia

Sillago robusta and S. bassensis occupy the open sandy areas of the deeper waters (20–35 m) of the inner continental shelf of the lower west coast of Australia. Comparisons were made of their age and size compositions, growth rates, ages and sizes at first maturity, and spawning times. Most S. robusta were less than 3 years old (maximum 7 years), while S. bassensis often reached 7 years of age (maximum 10 years). The maximum length of S. robusta (200 mm) was far shorter than S. bassensis (328 mm), whereas the reverse pertained for the von Bertalanffy growth coeffcient (K), i.e. c. 1.0 v. c. 0.3. Differences in K reflect the fact that c. 80% of the asymptotic length is achieved by S. robusta after 2 years, but not until 6 years of age by S. bassensis. Sexual maturity was reached by up to 50% of S. robusta at the end of their first year of life, and by almost all fish at the end of their second year of life. Most S. bassensis did not reach maturity until the end of their third year of life. In both species, those individuals that reached maturity early, were significantly longer than those that did not reach maturity at the same age. The gonadosomatic indices and proportions of mature gonads, and the numbers of vitellogenic and hydrated oocytes and post-ovulatory follicles, were relatively high in ovaries of both species between December and March. Although both species spawn in these 4 months, some S. bassensis also spawn between September and November and in March and April. In the middle of the spawning period, the ovaries of S. robusta and S. bassensis frequently contained oocytes that ranged widely in size and development, together with post-ovulatory follicles, suggesting that both species are multiple spawners. Juveniles of S. robusta remain in the deeper waters of the inner continental shelf, whereas those of S. bassensis migrate inshore to their nursery areas in surf zones. As S. robusta reaches sexual maturity at an earlier age and smaller size than S. bassensis, it is probably more advantageous for the juveniles of this species to remain in deeper water, and thereby conserve energy for gonadal maturation, rather than migrating into shallow waters for only a very few months.     

Translocation and Spread of Piscivorous Fishes in the Burdekin River, North-eastern Australia

The distribution of the biogeographically distinctive fish fauna of the Burdekin River, north-eastern Australia, is largely determined by the presence of a large waterfall located at the lower quarter of the river’s length. Downstream of the falls, assemblages are characterised by the presence of piscivorous fishes whereas such species are largely absent from upstream reaches. Sleepy cod (Oxyeleotris lineolatus), a large piscivorous gudgeon, was first introduced into the upper reaches of the Burdekin River in 1980 and other releases, both official and unofficial, have occurred subsequently. The population remained small and restricted to the site of introduction for a decade, but expanded in size and distribution after the occurrence of a large flood and entry into a prolonged period of drought. This gudgeon is now present in every tributary system of the Burdekin Basin. Despite the occurrence of substantial temporal variation in fish abundance due to a highly variable flow regime, negative impacts on one species, a small gudgeon (Mogurnda adspersa), are evident. Both deliberate and accidental releases of other species into the upper Burdekin River have also occurred, often to satisfy recreational fishing demand. Such species are typified by large size and piscivorous habit, characteristics alien and inimical to the native fish fauna. It is hypothesised that these piscivorous species may have even greater impact than O. lineolatus in some tributary systems of the upper Burdekin River.     

Emergence of epizootic ulcerative syndrome in native fish of the Murray-Darling River System, Australia: hosts, distribution and possible vectors

Epizootic ulcerative syndrome (EUS) is a fish disease of international significance and reportable to the Office International des Epizootics. In June 2010, bony herring Nematalosa erebi, golden perch Macquaria ambigua, Murray cod Maccullochella peelii and spangled perch Leiopotherapon unicolor with severe ulcers were sampled from the Murray-Darling River System (MDRS) between Bourke and Brewarrina, New South Wales Australia. Histopathology and polymerase chain reaction identified the fungus-like oomycete Aphanomyces invadans, the causative agent of EUS. Apart from one previous record in N. erebi, EUS has been recorded in the wild only from coastal drainages in Australia. This study is the first published account of A. invadans in the wild fish populations of the MDRS, and is the first confirmed record of EUS in M. ambigua, M. peelii and L. unicolor. Ulcerated carp Cyprinus carpio collected at the time of the same epizootic were not found to be infected by EUS, supporting previous accounts of resistance against the disease by this species. The lack of previous clinical evidence, the large number of new hosts (n = 3), the geographic extent (200 km) of this epizootic, the severity of ulceration and apparent high pathogenicity suggest a relatively recent invasion by A. invadans. The epizootic and associated environmental factors are documented and discussed within the context of possible vectors for its entry into the MDRS and recommendations regarding continued surveillance, research and biosecurity are made.     

Fish Communities of the Sacramento River Basin: Implications for Conservation of Native Fishes in the Central Valley, California

The associations of resident fish communities with environmental variables and stream condition were evaluated at representative sites within the Sacramento River Basin, California between 1996 and 1998 using multivariate ordination techniques and by calculating six fish community metrics. In addition, the results of the current study were compared with recent studies in the San Joaquin River drainage to provide a wider perspective of the condition of resident fish communities in the Central Valley of California as a whole. Within the Sacramento drainage, species distributions were correlated with elevational and substrate size gradients; however, the elevation of a sampling site was correlated with a suite of water-quality and habitat variables that are indicative of land use effects on physio-chemical stream parameters. Four fish community metrics – percentage of native fish, percentage of intolerant fish, number of tolerant species, and percentage of fish with external anomalies – were responsive to environmental quality. Comparisons between the current study and recent studies in the San Joaquin River drainage suggested that differences in water-management practices may have significant effects on native species fish community structure. Additionally, the results of the current study suggest that index of biotic integrity-type indices can be developed for the Sacramento River Basin and possibly the entire Central Valley, California. The protection of native fish communities in the Central Valley and other arid environments continues to be a conflict between human needs for water resources and the requirements of aquatic ecosystems; preservation of these ecosystems will require innovative management strategies.     

Reproduction, Growth, and Migration of Fishes in a Regulated Lowland Tributary: Potential Recruitment to the River Meuse

Many European rivers are characterized by a canalized main channel, steep stony embankments, the absence of aquatic vegetation, regulated flow dynamics, reduced hydrological connectivity to the floodplains and a lack of spawning and nursery areas for many fish species. In such regulated rivers, tributaries may be particularly important for recruitment of fish populations in the main channel. This paper describes the reproduction, growth and migration of fishes in the Everlose Beek, a regulated lowland tributary stream of the river Meuse (The Netherlands), using bi-weekly sampling from January to December 2002. A total of 8615 fishes were caught, belonging to 13 different species. The fish species were classified into three groups, viz., residents, migrants and transients, based on the presence of various life-stages in the tributary. Size-frequency data suggest that each group uses the Everlose Beek differently: (i) Stone loach (Barbatula barbatula), Gudgeon (Gobio gobio) and Three-spined stickleback (Gasterosteus aculeatus) were resident species using the tributary as a spawning, nursery and adult habitat; (ii) Bream (Abramis brama), Roach (Rutilus rutilus), Rudd (R. erythrophthalmus), Tench (Tinca tinca), and Pike (Esox lucius) were migratory species, using the tributary as a spawning area, as well as a nursery habitat during their first year of growth, but migrating towards the river Meuse typically at a length of 5–15 cm; and (iii) Bleak (Alburnus alburnus), Sunbleak (Leucaspius delineatus), Carp (Cyprinus carpio), Crucian carp (Carassius carassius), and Perch (Perca _,fluviatilis) were transient species, characterized by an absence of reproduction, ^.and the occurrence in very low densities of >age-1 juveniles and adults only. Lowland tributaries, such as the Everlose Beek, can contribute to the recruitment of particularly migrant species, hence contributing to fish populations of the regulated river Meuse.     

Alien Fishes in Natural Streams: Fish Distribution, Assemblage Structure, and Conservation in the Cosumnes River, California, U.S.A.

The Cosumnes River is the largest stream without a major dam on its mainstem in the Sacramento–San Joaquin drainage, central California, U.S.A. We studied its fishes over a 3-year period to answer the following questions: (1) Was the native fish fauna still present? (2) Why were alien fishes so abundant in a river system with a 'natural' flow regime, which elsewhere has been shown to favor native fishes? (3) Were there assemblages of fishes that reflected environmental differences created by the underlying geology? (4) Were there features of the watershed that consistently favored native fishes or that could be managed to favor native fishes? Of the 25 species collected, 17 were alien species; 14 species (five native) were abundant or widely distributed enough to use in detailed analyses. Of the native species, only rainbow trout, Oncorhynchus mykiss, still occupied much of its native range in headwater streams. Other native species have been extirpated or persisted mainly above barriers to alien invasions. The most widely distributed alien species was redeye bass, Micropterus coosae, previously unknown from the river, whose abundance was associated with low-numbers of native species. Other aliens were found primarily in low-land habitats on the valley floor or foothills. Canonical Correspondence Analysis indicated that both native and alien species located on environmental gradients determined largely by elevation, temperature, flow, and emergent vegetation, but the associations with these variables were not strong. While most alien fishes were found in lowland sections of river flowing through agricultural regions, the general relationships between species abundance and landscape-level variables were weak. Assemblages of fishes were poorly defined mixtures of native and alien species. The strikingly distinct geological regions of the basin no longer supported distinct fish assemblages. Species distributions were highly individualistic, reflecting dynamic patterns of introductions, invasions, and local extinctions, as well as physiological tolerances and life history patterns. Most native fishes are likely to persist in the Cosumnes River only if summer flows are increased and if populations above natural barriers are protected from further invasions by alien species, especially redeye bass. General conclusions from this study include: (1) altered habitats can support native species under some circumstances; (2) new fish assemblages with characteristics of 'natural' communities are likely to develop in invaded systems; (3) restoring flow regimes to favor native fishes may require restoring minimum summer flows as well as high channel-forming flows. However, reversing or even reducing, the impact of the predatory redeye bass, pre-adapted for California streams, is probably not possible.     

Freshwater fishes of the Burdekin River, Australia: biogeography, history and spatial variation in community structure

Spatial variation in freshwater fish community structure in a large, structurally monotonous sub-tropical Australian river over 1989–1992 is described. The number of species collected (25) over the period of study, was low, given the large size of the river's catchment. The low diversity of fishes present in the river was suggested to be due to a combination of factors including the imposition of an ancient downstream barrier to fish movement (the Burdekin Falls), substantial volcanic activity during the late Tertiary, past climatic stress and little variation in habitat structure over the range of sites examined. Notwithstanding the low species richness, the Burdekin River's freshwater fish fauna is distinctive, containing elements of the fauna of both eastern and northern Australia, and this was suggested to reflect aspects of ancient landscape evolution. Spatial variation in fish community structure was most strongly influenced by the presence of the Burdekin Falls (the present site of a very large reservoir) and secondarily by minor differences in habitat structure of main channel and tributary streams.     

The Utility of Carbon and Nitrogen Isotope Analyses to Trace Contributions from Fish Farms to the Receiving Communities of Freshwater Lakes: a Pilot Study in Esthwaite Water,UK

A pilot study was conducted to assess the potential for stable isotope analyses to reveal the fate of waste pelleted food material from fish farms in freshwater food webs. Esthwaite Water (Cumbria, UK) was selected as the study site, as it hosts an established salmonid farm, and a wealth of complementary limnological data exists. Salmonid pellet feed consists of primarily marine-derived material and thus exhibits carbon and nitrogen stable isotopic compositions distinct to most freshwater organic material. Comparison of the isotopic ratios of organisms at the cage site with an unaffected control site, supports incorporation of pellet-derived material to the diet of planktonic and benthic communities. Moreover, after allowing for a number of trophic transfers, stable isotope analyses revealed the predatory cladoceran Leptodora kindti also utilised pellet material, while roach were probably short-circuiting the food chain by directly consuming particulate pellet material, as well as via ingestion of their zooplankton prey. Isotope data substituted into a simple two-source mixing model suggested that approximately 65% of Daphnia, and >80% of roach body carbon may be derived from pellet material in the plankton, and that chironomid larvae may incorporate >50% in the sediment environs. However, contributions calculated from both ¹³C and ¹⁵N values were inconsistent, which may simply be due to the constraints of the model and parameters used, but may also reflect different routing of isotopes from the original pellet source, via soluble or particulate routes.     

Exposure to Metals through the Consumption of Fish and Seafood by the Population Living Near the Ebro River in Catalonia,Spain: Health Risks

The health risks due to metal exposure from consuming various fish and seafood species were assessed for the Catalan population living near the Ebro River (Spain). The concentrations of arsenic, cadmium, chromium, copper, mercury, manganese, nickel, and lead were determined in samples of mussel, clam, hake, sole, cuttlefish, sardine, and anchovy randomly acquired in various localities of the zone under evaluation. In general terms, metal concentrations were similar or lower than the levels recently reported in the literature. The current dietary intake of metals is analogous to that recently estimated for the non-exposed population of Catalonia. Metal exposure through fish and seafood consumption would only mean a slight increase of noncarcinogenic and carcinogenic risk for arsenic, whereas the remaining elements showed risk values below the corresponding threshold levels.     

Freshwater Reserves in Australia: Directions and Challenges for the Development of a Comprehensive,Adequate and Representative System of Protected Areas

The establishment of a system of protected areas that samples all ecosystems, including freshwater environments, in a comprehensive, adequate and representative (CAR) manner is regarded as a cornerstone for the conservation of biodiversity. There have been few quantitative assessments of the comprehensiveness, adequacy and representativeness of freshwater reserves in Australia. This paper reviews and quantifies the effect of classification of freshwater ecosystems for conservation planning, the importance of reservation status and protection measures for developing a CAR reserve system, and aspects of reserve design for freshwater ecosystems. We propose a strategic and iterative process that incorporates these measures to assist in the efficient and effective development of freshwater reserve systems worldwide. However, the provision of suitable water regimes for freshwater reserves presents further ecological and political challenges, and even adequate reservation of freshwater ecosystems may not conserve constituent biodiversity without effective management.     

Relationships between boron concentrations and trout in the Firehole River, Wyoming: historical information and preliminary results of a field study

The Firehole River (FHR) in Yellowstone National Park (YNP) is a world-renowned recreational fishery that predominantly includes rainbow trout (RBT,Oncorhynchus mykiss) and brown trout (BNT,Salmo trutta). The trout populations apparently are closed to immigration and have been self-sustaining since 1955. Inputs from hot springs and geysers increase the temperature and mineral content of the water, including elevating the boron (B) concentrations to a maximum of 1 mg B/L. Both RBT and BNT reside in warm-water reaches, except when the water is extremely warm (≥25°C) during midsummer. They spawn in late fall and early winter, with documented spawning of BNT in the cold-water reach upstream from the Upper Geyser Basin and of RBT in the Lower Geyser Basin reach, where water temperatures presumably are the warmest; however, successful recruitment of RBT in waters containing 1 mg B/L has not been demonstrated conclusively. Thus, we began investigating the relationships among temperature, B concentrations, other waterquality parameters, and the distribution and reproduction of trout in the FHR in spring 1997. However, atypical high water flows and concomitant lower than historical temperatures and B concentrations during summer 1997 preclude conclusions about avoidance of high B concentrations.     

The distribution patterns of dragonflies (Insecta: Odonata) along the Kiewa River,Australia, and their relevance in conservation assessment

Sampling of larval and adult Odonata from 16 sites along the Kiewa River, Victoria, yielded 34 species: 10 Zygoptera, 24 Anisoptera. Patterns of larval and adult incidence were appraised, and showed that most species were restricted in incidence to several consecutive sites along the river, and that there is clear distinction also between the faunas of the potamon, rhithron and eucrenon regions. Different species of some genera of Anisoptera displayed different zonational distributions, and patterns of incidence and relative abundance of larvae and adults confirmed zonational occupancy. For larvae, these distribution patterns transcended the mode of collection, although many species were found most abundantly in one microhabitat or by one of several sampling methods employed at each site. Sampling of the two stages separately showed considerable concurrence of distributional patterns, so that either stage alone may provide data of value in faunal and conservation assessment. This revised version was published online in July 2006 with corrections to the Cover Date.