Methods used to study Pythium oligandrum, an aggressive parasite of other fungi

Isolates of Pythium oligandrum Drechsler and P. acanthicum Drechsler behaved similarly in a range of experiments and in a manner consistent with mycoparasitism. They grew on cellulose in association with some fungi - notably Botryotrichum pilulferum Sacc. & March. and Phialophora radicicola Cain var. radicicola (IMI 187786) - and markedly reduced cellulolysis by these species; however, they had little effect on cellulolysis by Gaeumannomyces graminis (Sacc.) Arx & Olivier var. graminis and made little growth on cellulose in the presence or absence of this fungus. Pythium oligandrum and P. acanthicum also grew rapidly across plates of potato-dextrose agar precolonised by Phialophora radicicola var. radicicola, whereas isolates of P. echinulatum Matthews, P. mamillatum Meurs, P. megalacanthum de Bary, P. spinosum Sawada and P. ultimum Trow did not grow under these conditions. Precolonised agar plates were therefore used as a selective medium to isolate Pythium oligandrum and similar fungi from soils. For this, small pieces of soil organic matter were transferred to precolonised agar plates and incubated for 4–6 (-12) days, when the presence of P. oligandrum or similar fungi was assessed by their production of spiny oogonia across the host colony. The technique proved successful in isolating these fungi from a wide range of cultivated soils, even if the soils had been stored air-dry. However, boiled hemp seeds buried in soil and subsequently transferred to precolonised agar plates usually gave rise to phytopathogenic rather than mycoparasitic pythia. Pieces of wheat straw precolonised by P. oligandrum decomposed at the same rate as virgin straws or straws precolonised by P. ultimum or Mucor hiemalis Wehmer, when all were buried in nitrogen-supplemented soil. However, different cellulolytic fungi appeared to colonise straws in these respective treatments, Fusarium spp. being less common and Stachybotrys atra Corda more common in the presence of P. oligandrum than in its absence. When subsequently opposed to P. oligandrum on agar plates, Fusarium spp. appeared to be parasitised by this fungus and made very little growth across the agar, whereas S. atra grew through the colony of P. oligandrum and was clearly unaffected by the presence of this fungus. Our results demonstrate the widespread occurrence of P. oligandrum in cultivated soils in Britain and also suggest that this species might influence the activities of other soil fungi.     

Detection of the low-germination-rate resting oospores of Pythium myriotylum from soil by PCR

AIMS: To establish a sensitive and specific polymerase chain reaction (PCR)-based method for detecting Pythium myriotylum in soils. METHODS AND RESULTS: Oospores of P. myriotylum were separated from large soil particles by flotation in sucrose solution. The thick-walled oospores were disrupted by vortex with sea sand and its DNA was extracted by the Cetyl trimethyl Ammonium Bromide (CTAB) method. The recovered DNA was verified by PCR amplification of a 150-bp target sequence of P. myriotylum. Samples of 10 g of soil were assayed; thus, the detection limit by PCR-based method was 10 oospores per gram soil. The method was successfully applied for the detection of P. myriotylum in soils collected in March, prior to planting of ginger crops. CONCLUSIONS: A PCR-based method for detecting P. myriotylum from soil was achieved. SIGNIFICANCE AND IMPACT OF THE STUDY: The PCR method has allowed us to monitor the presence of P. myriotylum in soil prior planting season as a way of reducing or eliminating disease.     

Ecology of Hymexazol-Insensitive Pythium Species in Field Soils

Soils from 100 irrigated fields (95 under vegetables, 5 under citrus) in different geographical locations in the West Bank (Palestinian Autonomous Territory) were surveyed for hymexazol-insensitive (HIS) Pythium species using the surface soil dilution plate (SSDP) method with the VP3 medium amended with 50 mg/L hymexazol (HMI) (VP3H50), over a period of 12 months. HIS Pythium species were isolated from 37% of the soils surveyed, with mean population levels ranging from 4.3-1422 CFU g(-1) dry weight. Eight HIS Pythium taxa were recovered on the VP3H50 medium, the most abundant of which was P. vexans (found in 29% of field soils surveyed). Seasonal variations in population levels of HIS Pythium species were studied in four fields over a period of 12 months. Significant seasonal variations in HIS population levels were detected in the four fields, with the highest population levels of HIS Pythium spp. encountered in spring and the lowest population levels in winter in three of the fields surveyed. Effects of HMI on linear growth and colony morphology of 149 Pythium ssp. isolates were examined on CMA amended with HMI at five concentrations. Pythium vexans isolates responded differently from those of the other Pythium species. Isolates of this important pathogen were more insensitive to HMI at high concentrations than the other main species tested. A large proportion of the P. ultimum isolates was either insensitive or weakly sensitive to HMI. Furthermore, a few isolates of other Pythium species were insensitive to the fungicide at various concentrations. The colony morphology of P. vexans isolates was not affected by HMI, whereas colonies of the other species showed sparse growth on the HMI amended medium relative to the control. The pathogenicity of P. vexans and P. ultimum isolates to cucumber seedlings was examined in growth chambers. Insensitive isolates of both species were found to be more virulent damping-off pathogens than the sensitive isolates. The present study demonstrates that HMI can not be used effectively in controlling Pythium spp. in soil inhabited with high densities of HIS Pythium spp. pathogens.     

Effect of environmental characteristics on Pythium and Mesocriconema spp. in golf course greens in Alabama

The role the environment has on populations of Pythium and Mesocriconema spp. was investigated at 5 golf course locations in east central Alabama. Every 4 to 5 weeks soil samples were collected from 3 golf greens on each of the 5 golf courses. Environmental data, including air and soil temperature, pH and relative humidity, were also collected. Dilution plating and a combined sieving and sugar flotation procedure were conducted to determine the populations of Pythium and Mesocriconema spp. for each month. Isolates of Pythium from 4 months were also identified. Pythium spp. populations increased as soil temperature and ambient air temperature prior to sampling decreased (P < 0.05). Pythium spp. populations were highest in the winter and lowest in the spring. At some locations, populations of Mesocriconema spp. increased as soil acidity and populations of Pythium spp. decreased (P < 0.05) and as ambient air temperature prior to sampling increased (P < 0.05). Eight species of Pythium were isolated from 4 months, with Pythium rostratum being the most commonly isolated. Results suggest that Pythium and Mesocriconema spp. prefer different soil environments.     

Phenazines and biosurfactants interact in the biological control of soil-borne diseases caused by Pythium spp

In this study, the putative role of phenazines and rhamnolipid-biosurfactants, antagonistic metabolites produced by Pseudomonas aeruginosa PNA1, was tested in the biological control of Pythium splendens on bean ( Phaseolus vulgaris L) and Pythium myriotylum on cocoyam ( Xanthosoma sagittifolium L Schott). A rhamnolipid-deficient and a phenazine-deficient mutant of PNA1 were used either separately or jointly in plant experiments. When the mutants were applied separately, no disease-suppressive effect was observed, although both mutants still produced one of the antagonistic compounds (phenazines or rhamnolipids). When the mutants were concurrently introduced in the soil, the biocontrol activity was restored to wild-type levels. Bean seeds developed significantly less pre-emergence damping-off caused by P. splendens when treated with a mixture of purified phenazine-1-carboxamide and rhamnolipids than with any of the chemicals alone. When phenazines and rhamnolipids were combined at concentrations that had no observable effects when the metabolites were applied separately, mycelial growth of P. myriotylum was significantly reduced. In addition, microscopic analysis revealed substantial vacuolization and disintegration of Pythium hyphae after incubation in liquid medium amended with both metabolites. Results of this study indicate that phenazines and biosurfactants are acting synergistically in the control of Pythium spp.     

Potential sources of Pythium inoculum into Greenhouse Soils with no Previous History of Cultivation

A study was undertaken to investigate the potential sources of Pythium inoculum in greenhouse soils. About 7% of fallow soils were found to harbour Pythium before being introduced into greenhouses. When replacing the top layer (30–60 cm) of cultivated soil in greenhouses with fallow soil, Pythium inoculum was still recovered from the bottom layer of soil left in the greenhouse. Other potential sources of Pythium were found to be potting mixtures and contaminated soil adhering to cultivation equipment, growers' shoes and reused irrigation pipes. Pythium isolates from different sources were from two species: Pythium aphanidermatum (88%) and P. spinosum (12%). This appears to be the first report of transmission of Pythium via contaminated soil adhering to reused irrigation pipes. It also represents the first report in Oman of transmission of Pythium into greenhouses via potting mixtures and fallow soils.     

Production of Zoospores, Mode of Infection, and Inoculum Potential of Pythium myriotylum Propagules on Cocoyam

Zoospores of Pythium myriotylum were consistently produced from sporangia of detached mycelia in vitro in deionized water at pH 7.0 with 0.001 M sucrose in 24 h of continuous fluorescent light at 31°C. The oblong-to-pea shaped zoospores measured from 2.5–7.5 μm in diameter and remained motile for more than 48 h. The lengths of flagella were 1–1.5 times the diameter of the zoospores. Contaminated cultures of P. myriotylum were revived to pure isolates by the use of zoospores. The penetration of P. myriotylum propagules took from 6 to 7 h following contact of the inoculum with the roots, and the invasion was inter- and intracellular. At the minimum concentrations of 200 zoospores/ml or 180 mycelial strands/ml, P. myriotylum caused symptoms of CRRD within 3 to 6 days after inoculation of the roots of cocoyam plantlets, results indicating that the pathogen is very destructive in cocoyam.     

Common Mesophilic Anaerobes, Including Clostridium botulinum and Clostridium tetani, in 21 Soil Specimens

A relatively rich medium was markedly superior to a dilute medium for the isolation of anaerobic bacteria from soil. The obligate anaerobes isolated from 21 soil samples were all clostridia and the counts ranged from 2.7 X 10-2 to 3.3 X 10-6 per g. The organisms most frequently isolated were Clostridium subterminate, C. sordelii, C. sporogenes, C. indolis, C. bifermentans, C. mangenoti, and C. perfringens. Seventeen other species were also recognized but almost one-third of the isolates could not be identified with any known species of Clostridium. C. botulinum type A was demonstrated in six soil samples, and type B in one. These soils were neutral to alkaline in reaction (average pH 7.9) and low in organic matter content (1.4%). The association of C. botulinum types A and B with neutral to alkaline soils was statistically significant (P = 0.001) as was their association with soils low in organic matter (P = 0.005). C. botulinum types E and F were found in one soil sample, pH 4.5, with organic matter 13.7%. C. tetani was isolated from two soil samples, both of intermediate pH value and higher than average organic matter content.     

喀麦隆芋艿根腐病病原菌鉴定

从采自喀麦隆不同地区的芋艿(Xanthosoma mafaffa L.)病根及田土中分离菌株,分别从雅温得(Yaound(?))和巴马约(Mbalmayo)分离到的腐霉菌株XPMY和XPMM1,根据其形态学及生理学特征鉴定为群结腐霉Pythium myriotylum,用上述腐霉菌株的游动孢子悬液或菌丝体片断悬液人工接种,表现叶黄化及根腐等典型症状。用经常伴随群结腐霉的立枯丝核菌Rhizoctonia solani及茄镰孢Fusarium solani人工接种后均未表现症状。研究结果表明:群结腐霉Pythium myriotylum Drechsler是喀麦隆芋艿根腐病的致病菌。     

Antifungal activity of rhizospheric bacteria

Fluorescent Pseudomonad spp. were isolated from the rhizosphere of potato plants (Algeria) by serial dilutions of rhizosphere soils on Kings B medium and were tested for their antifungal activity. The antifungal activity of the Pseudomonas isolated from Potatoes rhizosphere was tested against Pythium ultimum, Rhizoctonia solani and Fusarium oxysporum in dual culture with bacteria on PDA. The Petri dish was divided into tow, on one the bacteria was spread and on the opposite side fungal plugs were inoculated and incubated for one week. Fourteen bacteria were isolated; only one isolate inhibited the growth of Pythium ultimum, Rhizoctonia solani, Fusarium solani; Fusarium oxysporum f.sp. albedinis and Fusarium oxysporum f. sp. Lycopersici with inhibition zones of 39.9, 33.7, 30.8, 19.9 and 22.5 mm respectively.     

Efficiency of various selective media in determining Pythium population in soil

Of 15 selective media recommended for isolation and enumeration ofPythium spp. directly from soil, corn meal agar (CMA) supplemented with agar, sucrose, minor elements, thiamine, rose bengal, pimaricin, pentachloronitrobenzene and vancomycin (MPVM) was the most efficient. Streptomycin (30–50 ppm) and rose bengal (33–60 ppm) as used in certain tested media effectively suppressed development of bacteria and actinomycetes. However, these chemicals adversely affected germination of spores and mycelial growth and thereby the recovery ofPythium spp. from soil. Media containing pimaricin (5 to 100 ppm) were more effective than those with nystatin (40 ppm) in suppressing development of nonphycomycetous fungi on isolation plate. MPVM with pimaricin at 5 ppm was more efficient than that with 10 ppm of the antibiotic in recoveryingPythium from soil. However, there was no difference in recovery ofPythium by this medium containing rose bengal at 5 ppm or at 10 ppm, butPythium colonies were more dense and better delineated when the medium contained 10 ppm of rose bengal. CMA containing pimaricin (5–100 ppm) and vancomycin (200 ppm) permitted occasionally development of a large number ofMortierella and bacterial colonies from certain soils, that interfered with accurate determination of colonies of certainPythium spp. on the plates. Vancomycin at 300 ppm, as used in MPVM, substantially reduced development of bacterial colonies compared to 200 ppm of the antibiotic. Surface-soil dilution-plate was more effective than the soil-dilution-plate method in reducing bacteria andMortierella colonies on isolation plates without affecting recovery ofPythium. The importance of basal medium, complement of antimicrobial agents, and isolation methods for efficiency of selective medium in recovery ofPythium spp. directly from soil is discussed.     

Host Specificity of Pathogenic Pythium Species: Implications for Tree Species Diversity

In the Janzen–Connell hypothesis, host-specific natural enemies enhance species diversity and influence the structure of plant communities. This study tests the explicit assumption of host specificity for soil pathogens of the genus Pythium that cause damping-off disease of germinating seeds and seedlings. We isolated Pythium spp. from soil of a tropical forest in Panama. Then, in an inoculation experiment, we determined the pathogenicity of 75 tropical isolates of unknown pathogenicity and seven pathogenic temperate isolates of Pythium on seeds and/or seedlings of eight tropical tree species. Only three tropical isolates, one identified as P. ultimum and two as P. aphanidermatum , were pathogenic. Tropical pathogenic isolates were pathogenic on 4–6 of eight tree species. Temperate isolates were pathogenic on 0–4 of eight species, indicating that some tropical tree species are susceptible to novel isolates of Pythium . No tree species was susceptible to all isolates and two species were not susceptible to any isolate. Collectively, these results indicate that these Pythium isolates vary widely in their pathogenicity, causing differential mortality of potential host species; likewise, the tree species vary in their susceptibility to a given Pythium isolate. These differences in pathogenicity and susceptibility indicate some support for the Janzen–Connell assumption of host specificity. While they are not restricted to a single species, their intermediate level of specificity suggests that Pythium spp. have the potential to have some effect on forest community structure and diversity.     

Comparative Physiology and Behaviour of the Mycoparasites Pythium acanthophoron, P. oligandrum and P. mycoparasiticum

Pythium acanthophoron (two isolates) was as aggressive as P. oligandrum in hyphal interactions with Fusarium oxysporum on water agar films. It caused rapid post-contact lysis or cytoplasmic coagulation of the host, and often branched and penetrated the host at contact points. P. acanthophoron grew across a range of fungi on pre-colonized agar plates; the range was narrower than for P. oligandrum but broader than for P. mycoparasiticum. In chemically defined liquid media, P. acanthophoron was unique among the six known mycoparasitic Pythium spp. in requiring organic nitrogen but not thiamine. It also grew on mannitol as the sole carbon source in the presence of calcium or sterols or both. However, individual isolates of the three mycoparasitic species showed different responses to calcium and the sterols ergosterol, cholesterol and beta-sitosterol when grown on mannitol. All three mycoparasites required components of molasses, carrot extract or sunflower seed extract to produce oogonia in culture; they formed few oogonia on potato extract, with or without dextrose, even when supplied with sterols. The three mycoparasites were less tolerant of high NaCl levels in culture than were three phytopathogens (P. aphanidermatum, P. ultimum, P. graminicola), in contrast to a previous report for P. oligandrum and P. ultimum. These in vitro studies suggest that P. acanthophoron has potential for use as a biocontrol agent instead of, or in addition to, P. oligandrum.     

Hexadecane mineralization activity in ornithogenic soil from Seabee Hook,Cape Hallett,Antarctica

Ornithogenic soils that form in penguin rookeries contain high levels of organic carbon and nitrogen. On Seabee Hook, Cape Hallett, Antartica, ornithogenic soil was contaminated with hydrocarbons following establishment of a scientific research station. In these soils hydrocarbon biodegradation could be supported by available soil nitrogen. Hexadecane mineralization activity was detected in vitro in ornithogenic soil when incubated at 5 or 15°C. At 5°C the extent of hexadecane mineralization was higher in hydrocarbon-contaminated soil than in uncontaminated soil. Alkane-degrading bacteria isolated from Seabee Hook soil were identified as Rhodococcus or Gordonia spp. or an unclassified Corynebacterineae. The alkane degraders grew on n-alkanes from heptane (C8) to eicosane (C20) and pristane, and utilized uric acid or ammonium nitrate as nitrogen source. All of the isolates possessed urease activity. Results of this study indicate biodegradation of hydrocarbons may contribute to the natural attenuation of oil spills in ornithogenic surface soils in summer.     

Use of polymerase chain reaction to detect the soft rot pathogen,Pythium myriotylum,in infected ginger rhizomes

AIMS: The aims are to establish a polymerase chain reaction (PCR)-based method for detecting Pythium myriotylum in the rhizome of ginger and diagnosing ginger soft rot and screening health seed ginger. METHODS AND RESULTS: A booster PCR method was established for detection of P. myriotylum using a specific primer selected from rDNA ITS1 region coupled with universal primer ITS2. It successfully applied to the detection of P. myriotylum in naturally infected ginger rhizomes but not from DNA of ginger rhizomes collected from field without target fungus. CONCLUSIONS: A specific method for detecting P. myriotylum was achieved. SIGNIFICANCE AND IMPACT OF THE STUDY: The new PCR method has allowed us to monitor ginger for the presence of P. myriotylum as a way of disease diagnosis or healthy seed ginger examination.     

Effect of Storage on the Survival and Biocontrol Activity of Pythium oligandrum in Pelleted Sugar Beet Seed

Seeds of sugar beet were pelleted with oospores of Pythium oligandrum and stored for 6 years at 8 20IC. Mycelium of P. oligandrum grew from pelleted seed when plated on cornmeal agar (CMA) within 48 h from 100% of seeds stored for 0, 2 and 4 years, and from 93% of seeds stored for 6 years. The germination of oospores removed from pelleted seed immediately after pelleting was 30% on CMA after 18 h of incubation, but storage gradually reduced germination to only 16% after 48 h of incubation for oospores removed from seed stored for 6 years. The biocontrol activity of P. oligandrum -pelleted seed was also tested after 6 years of storage in mixes of soil naturally infested with Pythium spp. and Aphanomyces cochlioides , and sand. P. oligandrum -pelleted seed had no effect in reducing damping-off due to the combined effect of Pythium spp. and A. cochlioides in 5 and 1% (v/v) soil-sand mixtures. However, in the 1% (v/v) soil-sand mixture, P. oligandrum significantly reduced Pythium spp.-induced damping-off from 33 to 26%.     

Interaction of the mycoparasite Pythium oligandrum with other Pythium species

Interactions of Pythium oligandrum and four plant‐pathogenic Pythium spp. (P. ultimum, P. vexans, P. graminicola and P. aphanidermatum,) were studied in vitro by (i) video microscopy of hyphal interactions on water agar films, (ii) counting of host and mycoparasite propagules in different regions of opposing colonies on sunflower‐seed extract agar films and (Hi) ability of P. oligandrum to overgrow plates of potato‐dextrose agar previously colonized by Pythium spp. Pythium oligandrum typically coiled round the hyphae of Pythium hosts and penetrated the host hyphae after approximately 50 min from the hyphal coils, causing disruption of host hyphal tips up to 1.2 mm ahead of contact points. The relative growth rates of mycoparasite and host hyphae, timing of penetration and distance (sub‐apical) at which penetration led to host tip disruption were used to assess the potential of mycoparasitism by P. oligandrum to prevent the growth of Pythium hosts. P. aphanidermatum was unique among the ‘host’ Pythium spp. in being largely unaffected by P. oligandrum and in antagonizing the mycoparasite by coiling and penetrating the mycoparasite hyphae. Other host Pythium spp. apparently differed in susceptibility, the most susceptible being P. vexans and P. ultimum, whereas P. graminicola was more resistant. The results are discussed in relation to the role of P. oligandrum as a biocontrol agent, especially for limiting the ability of other Pythium spp. to increase their propagule populations in crop residues.     

一种土壤中大豆疫霉菌分离新方法*

由于腐霉菌的干扰,土壤中大豆疫霉菌的分离十分困难。利用大豆疫霉菌的致病性和大豆对病原菌的选择作用排除腐霉菌,我们建立了一种简单、有效的土壤中大豆疫霉菌的分离方法。该方法用不含抗大豆疫霉根腐病基因的大豆叶碟诱钓大豆疫霉菌的游动孢子,将诱钓叶碟直接接种不含抗大豆疫霉菌基因的大豆植株,再对病株进行选择性或非选择性分离获得大豆疫霉菌。此方法能十分有效地排除腐霉菌干扰和细菌的污染,直接获得纯化菌株。应用该方法我们在以前未报道有大豆疫霉根腐病发生的山东、河南、安徽、江苏和浙江分离到大豆疫霉菌。     

Methods for DNA extraction from various soils: a comparison

Seven methods for bacterial DNA extraction and purification from soil samples were compared. Holben's direct lysis method recovered significantly greater amounts of DNA than the other methods tested, while CsCl-ethidium bromide density gradient ultracentrifugation was better than gel filtration at removing humic acid from crude DNA isolated from soil. When both these methods were combined, 5·94 μg of DNA (A_260/280 ratio around 1·754) was yielded g⁻¹ oven-dried sandstone shale alluvial soil; similarly satisfactory yields were obtained from Taiwan clay, and sandstone shale and slate alluvial soil managed under different farming practices. DNA obtained by these methods was readily digested by Eco R I and Hind III. When soil samples were stored for 3 weeks at 4 °C, the fraction of high-molecular-weight DNA was reduced significantly. Thus, DNA extraction should be carried out as soon as possible after a soil sample has been collected from the field. When hyphae of Pythium aphanidermatum and Fusarium solani were subjected to the above lysis method, DNA could not be detected in the extract.     

灭蚊真菌一贵阳腐霉对植物的安全性试验

The aim of this study is to investigate whether Pythium guiyangense,a mosquito-killing fungus isolated in Guiyang,Guizhou Province of China in 1994,is pathogenic to plants.Six common crops,Cucumis sativa,Lycopersicon esculentum,Capsicum annuum,Nicotiana tabacum,Brassica campestris and Oryza sativa were used as subjects for test.Zoospores of the fungus were used to infect the plants with soil inoculation method,caudex injection method and foliage spray method.Both positive control(using P.aphanidermatum)and negative control(using sterile water)were set up in all the experiments.The results showed that no infection was found on the tested plants in soil inoculation experiments.In caudex injection test,callus grew around the wounded tissue in most of the plants.Brownish rottenness could be found only in the injected wounds in a few plants,probably caused by saprophytic bacteria or other fungi,and the germ-carrying plants grew normally.No abnormal appearance was found on the six crops in foliage spray test.It was demonstrated that P guiyangense could hardly infect plants in nature,and was a safe and promising agent for mosquito biological control.