An elementary,structural analysis of river phytoplankton

Summary A structural analysis of river phytoplankton has been carried out based upon published studies on 67 rivers. When available on a yearly basis to account for seasonal variability, five structural features have been chosen: species composition, species richness, species dominance, diversity and biomass (total and per taxonomic groups). Despite the high number of reported studies, most of them cover only some of the aforementioned features. As a result of the low amount of studies, tropical rivers are underepresented. No size distribution studies have been carried out on river phytoplankton. The average species richness amounts to 126, being higher in temperate rivers. Roughly one half of each flora is comprised of sporadic species. No statistically significant relationship between species richness and latitude has been found despite the fact that tropical rivers appear to house fewer species than temperate rivers. Also, one half of the support in the floras are either benthic or tychoplanktonic. Diatoms comprise the majority of species numbers in the whole data set but are substituted by desmids in tropical rivers and by green algae when benthic species are not taken into account. There appears to be lower biomass in river phytoplankton than in lakes. Diatoms are also the major taxonomic group comprising total biomass in rivers but they share clearly a lower fraction in tropical rivers. On an average basis, diatoms appear to be more dominant in rivers than in lakes. The time course of diatom dominance occurs close to the summer solstice in tropical rivers whereas is much more lagged in temperate sites. The diversity of river phytoplankton is highly scattered (0.40–4.40 bits ind^–1).     

Diversity,Body Mass,and Latitudinal Gradients in Primates

We examined latitudinal gradients in central value and diversity of body mass of primates to increase understanding of the Forster effect (decrease in taxonomic diversity with increasing latitude) and the Bergmann effect (increase of body mass with latitude). Data are from the literature. We used species’ median body mass of females and mid-latitude (N = 164). We account for phylogenetic effects with comparative analysis by independent contrasts and analysis at differing taxonomic levels. Globally, diversity of both taxonomy and body mass declined significantly with increasing latitude. The decrease in the range of body masses with increasing latitude was caused mainly by the absence of several small-bodied clades at higher latitudes, but also by the absence there of great apes. The disappearance of the small-bodied clades caused an increase in median body mass with latitude, i.e., primates show a significant taxon-wide Bergmann effect, including with phylogenetic correction. Within the Primates, the Bergmann effect was significant within taxa that extend from the equator the farthest into temperate regions: the Old World infraorder Catarrhini, family Cercopithecidae, and subfamily Cercopithecinae; the Asian Cercopithecidae; and in Southeast Asian Sunda, Macaca. The results accord with hypotheses for the Forster effect that latitudinal gradients in taxonomic diversity result from high rates of speciation in the tropics, and ecological, and therefore evolutionary, constraints on diversity at higher latitudes. For the Bergmann effect, the results support energetic hypotheses that the very largest-bodied and the small-bodied taxa cannot survive the long periods of limited resources at higher latitudes.     

Seasonal dynamics of phytoplankton in a lagoon-type lake Izmenchivoye (Southeast Sakhalin)

The seasonal changes in taxonomic structure, dynamics of number, and biomass of phytoplankton in the Izmenchivoye lagoon lake (southeast Sakhalin) were studied. In all, 266 species and intraspecies taxa of microalgae were revealed. The greatest species diversity (according to the Shannon index) was observed in May, August and October (H = 2.76–2.89), the least (H = 0.5–0.86), in April and January of 2006. The monthly average number varied from 997 up to 84 282 cells/l, and biomass from 18.98 up to 878.62 mg/m³. The average annual number of phytoplankton and its biomass were 32 650 cells/l and biomass 172.13 mg/m³ respectively. The maximum number was registered in August, 2005, and maximum biomass was recorded in January, 2006. Winter, spring and summer peaks of number coinciding with those of biomass were registered. For the first time, winter bloom of phytoplankton was registered in inland waters of the Sakhalin Island. In the winter and spring the basic input to formation of the parameters was composed of diatoms; in summer and autumn it was composed of by flagellates (dinophyta and cryptophyta).     

The role of phytoplankton diversity metrics in shallow lake and river quality assessment

Ecological water quality problems are frequently connected to increment of phytoplankton productivity and overdominance of some phytoplankton species. Metrics that show monotonously increasing or decreasing tendencies along stressor gradients is recommended for ecological state assessment. Diversity metrics are influenced by various physical disturbances and show high within-year variability; thus, there is no agreement on the usefulness of these metrics as state indicators.To test the usefulness of phytoplankton diversity in ecological state assessment we investigated the productivity–diversity relationships for lakes and rivers in the Carpathian Basin (Hungary). We demonstrated that the shape of productivity–diversity relationship depends on the investigated water body type. Regarding lakes, hump-shaped relationship was found for all computed metrics. Parallel with the increase in phytoplankton productivity values, diversity metrics showed monotonously increasing tendencies in rhithral and decreasing tendencies in large potamal rivers. We found no systematic relationship in the case of small lowland rivers.Changes of diversity metrics calculated for species and functional groups showed similar tendencies within the types, only the slopes of regression lines differ each other.The use of diversity metrics as ecological state indicators should be restricted to water body types where diversity decreases or increases monotonously with phytoplankton biomass. Regarding the lakes the use of diversity metrics is not recommended for ecological state assessment. In rhithral and large potamal river assessment, application of diversity metrics should be strongly considered. We demonstrated that diversity metrics can be useful components of multimetric indices proposed to use by the Water Framework Directive.     

Determining tipping points in aquatic ecosystems: The case of biodiversity and chlorophyll α relations in fish pond systems

The management of biodiversity in aquatic ecosystems requires knowing the state of water quality linked to regime shifts in various taxonomic groups. We examine this question by studying the fish ponds in the Dombes region, France. These waterbodies are characterized by a high diversity of species. High levels of nutrients due to certain fish farming practices may cause significant eutrophication leading to loss in biodiversity and a shift from high coverage of aquatic vegetation to phytoplankton dominance may also be observed. The aim of this study is to assess tipping points, thresholds for effect, along a gradient of chlorophyll α in different taxonomic groups: aquatic vascular plants, phytoplankton, dragonflies and aquatic macro-invertebrates. Tipping points are analyzed with three different statistical methods: a method which evaluates tipping points with a difference in the mean (TMEAN), a second method which evaluates tipping point by comparing the mean and linear regressions before and after the tipping point (FSTAT) and third a method which evaluates linear regressions with a pivotal tipping point (SEGMENTED). We also compare tipping points for the different taxonomic groups using five different diversity indices: Observed richness, Jackknife first order, Fisher's alpha, Simpson index and Evenness.Our results show that there is an important variation in tipping points following the three statistical methods, but the SEGMENTED is the best method for evaluating tipping points. We observe a high difference of tipping point values for the different taxonomic groups depending on the diversity indices used. Jackknife first order has a better performance to evaluate a eutrophic change according to the diversity than the other indices.In all taxonomic groups, aquatic vascular plants are the most impacted by the chlorophyll α and almost all their tipping points are observed around 60 μg/L chlorophyll α concentrations. No significant relationship is found between chlorophyll α and phytoplankton diversity, while the two other groups, dragonflies and macro-invertebrates, are both impacted by the chlorophyll α but their relevant tipping points are situated in higher values than aquatic vascular plants.     

Relationship between plant species diversity and soil microbial functional diversity along a longitudinal gradient in temperate grasslands of Hulunbeir,Inner Mongolia,China

Numerous experiments have been established to examine the effect of plant diversity on the soil microbial community. However, the relationship between plant diversity and microbial functional diversity along broad spatial gradients at a large scale is still unexplored. In this paper, we examined the relationship of plant species diversity with soil microbial biomass C, microbial catabolic activity, catabolic diversity and catabolic richness along a longitudinal gradient in temperate grasslands of Hulunbeir, Inner Mongolia, China. Preliminary detrended correspondence analysis (DCA) indicated that plant composition showed a significant separation along the axis 1, and axis 1 explained the main portion of variability in the data set. Moreover, DCA-axis 1 was significantly correlated with soil microbial biomass C (r = 0.735, P = 0.001), microbial catabolic activity (average well color development; r = 0.775, P < 0.001) and microbial functional diversity (catabolic diversity: r = 0.791, P < 0.001 and catabolic richness: r = 0.812, P < 0.001), which suggested thatsome relationship existed between plant composition and the soil microbial community along the spatial gradient at a large scale. Soil microbial biomass C, microbial catabolic activity, catabolic diversity and catabolic richness showed a significant, linear increase with greater plant species richness. However, many responses that we observed could be explained by greater aboveground plant biomass associated with higher levels of plant diversity, which suggested that plant diversity impacted the soil microbial community mainly through increases in plant production.     

Functional richness outperforms taxonomic richness in predicting ecosystem functioning in natural phytoplankton communities

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The causes of change in the diversity and stability of phytoplankton communities in small lakes

SUMMARY. 1. A study of the diversity and stability of phytoplankton communities during one vegetation period (February-October 1984) was carried out in four small lakes in the Pfynwald region of Canton Valais, Switzerland: Kaminsee I, Kaminsee II, Grossee and Rosensee. The diversity was calculated according to Shannon & Weaver (1949). The change in diversity ΔH; and SIMI (similarity index according to Stander. 1970) were used as measures of stability. 2. On average, the diversity was highest in the oligotrophic Rosensee (annual mean 3.19) and least in the hypereutrophic Kaminsee I (annual mean 1.34). In Kaminsee I and Grossee, the diversity corresponded in the main to the relative frequency of Cryptomonas erosa Ehrenberg: i.e. the diversity was low when the relative frequency of C. erosa was high and vice versa (Kaminsee I: max. diversity 2.74; min. 0.13. Grossee: max. 3.62; min. 0.28; annual mean 2.21). Kaminsee II and Rosensee exhibited only slight variations in their phytoplankton community structure (Kaminsee II: max. diversity 2.83; min. 1.26; annual mean 2.10. Rosensee: max. 3.79; min. 2.81). High values of diversity, or increases in diversity, were a result of low nutrient availability and grazing pressure. Lower diversity values. or decreases in diversity, were a result of a plentiful nutrient supply, low grazing pressure and grazer selectivity with respect to food organisms. 3. Because values of the diversity index vary by different amounts during the course of a year depending on the water body, the characterization of a phytoplankton community on the basis of one value alone is unsatisfactory. It is suggested that the mean and either standard deviation or range of the diversity be cited in order to overcome this drawback at least partially. 4. No generally accepted measure exists for the calculation of stability. According to the measure of stability employed, a community may appear to be more or less stable. A statement concerning the stability of a community without mentioning the measure employed is therefore worthless. The factors determining the stability of a phytoplankton community do not have the same effect on all measures of stability. 5. The change in diversity ΔH’was influenced in the main by alterations     

Long-term compositional response of phytoplankton in a shallow,turbid environment,Neusiedlersee (Austria/Hungary)

Data on phytoplankton biomass and on nutrient concentrations from Neusiedler See (mean depth 1.3 m) covering more than two decades are presented. The lake underwent strong eutrophication during this period. The response of annual average phytoplankton biomass and chlorophyll-a to the increase of phosphorus concentration from 10 to > 100 µg l^-1 was moderate (7-fold increase). This is caused by light limitation of the system because of the high inorganic turbidity of the lake. Analyses of the spring, summer and autumn seasons at the generic and higher taxonomic levels show significant changes in composition of the phytoplankton community. Diatoms were more important during the pre-eutrophication phase while Chlorophyceae became most prominent during the peak of the eutrophication process. Blue-green algae, including Microcystis, became more apparent after this period. The abundance of some groups or genera, e.g. Euglena, was linked to the decline and re-appearance of submerged macrophytes in the lake. Abiotic and biotic interactions as causes for the observed changes are discussed.     

Taxonomic aggregation does not alleviate the lack of consistency in analysing diversity in long‐term phytoplankton monitoring data: a rejoinder to Pomati et al. (2015)

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Disturbance events affecting phytoplankton biomass,composition and species diversity in a shallow,eutrophic, temperate lake

The seasonal changes in phytoplankton biomass and species diversity in a shallow, eutrophic Danish lake are described and related to different disturbance events acting on the phytoplankton community.Both the spring diatom maximum and the summer bloom of the filamentous blue-green alga, Aphanizomenon flos-aquae (L.) Ralfs, coincided with low values of phytoplankton species diversity and equitability. Diatom collapse was mainly due to internal modifications as nutrient depletion (Si, P) caused by rapid growth of phytoplankton, and increased grazing activity from zooplankton. A large population of Daphnia longispina O.F. Müller in June effectively removed smaller algal competitors, thus favouring the development of a huge summer bloom (140 mm³ l^–1) of Aphanizomenon flos-aquae. Heavy rainfall and storms in late July increased the loss of Apahnizomenon by out-flow and disturbed the stratification of the lake. These events caused a marked decline in phytoplankton biomass but had no effect on species diversity. A second storm period in late August circulated the lake completely and was followed by a rapid increase in phytoplankton diversity, and a change in the phytoplankton community structure from dominance of large, slow-growing K-selected species (Aphanizomenon) to small, fast-growing r-selected species (cryptomonads).     

Comparison of taxonomic, colony morphotype and PCR-RFLP methods to characterize microfungal diversity

We compared three methods for estimating fungal species diversity in soil samples. A rapid screening method based on gross colony morphological features and color reference standards was compared with traditional fungal taxonomic methods and PCR-RFLP for estimation of ecological indices of soil microfungal community composition. Normalized counts of colony morphotypes on dichloran rose bengal medium were used to estimate species richness (S) and evenness (J) and to calculate Shannon's diversity (H) and Simpson's (SI) dominance indices. Isolates were obtained by dilution plating techniques from litter and soil layer samples taken from Douglas-fir forest and clear-cut areas at two locations in the Cascade Mountains. The highest correspondence (97%) was observed between taxonomic identification and RFLP patterns (32:33). Cladistic analyses of PCR-RFLP patterns indicated an 81% correspondence between RFLP patterns:colony morphotypes (33:41). A correspondence of 78% was observed between traditional taxonomic identification:colony morphotypes (32:41). Statistical analyses of ecological indices based on quantitative application of the colony morphotyping method indicated significant differences (P < 0.05) in fungal community composition between forested and clear-cut areas at the Toad Road site but not at the Falls Creek site. Comparisons of ecological indices based on traditional identification of taxa by microscopic characterization on defined culture media resulted in identical findings of statistical significance. The colony morphotyping approach is proposed as a screening method to identify potential effects of land management practices, edaphic factors and pollutants on microfungal diversity.     

Links between global taxonomic diversity,ecological diversity and the expansion of vertebrates on land

Tetrapod biodiversity today is great; over the past 400 Myr since vertebrates moved onto land, global tetrapod diversity has risen exponentially, punctuated by losses during major extinctions. There are links between the total global diversity of tetrapods and the diversity of their ecological roles, yet no one fully understands the interplay of these two aspects of biodiversity and a numerical analysis of this relationship has not so far been undertaken. Here we show that the global taxonomic and ecological diversity of tetrapods are closely linked. Throughout geological time, patterns of global diversity of tetrapod families show 97 per cent correlation with ecological modes. Global taxonomic and ecological diversity of this group correlates closely with the dominant classes of tetrapods (amphibians in the Palaeozoic, reptiles in the Mesozoic, birds and mammals in the Cenozoic). These groups have driven ecological diversity by expansion and contraction of occupied ecospace, rather than by direct competition within existing ecospace and each group has used ecospace at a greater rate than their predecessors.     

Assessment distribution of the phytoplankton community structure at the fishing ground,Banyuasin estuary,Indonesia

The research objective was to describe the distribution of phytoplankton community structure and corelated to the physic-chemical parameters at fishing ground, Banyuasin estuarine waters. The methodology of research was phytoplankton sampling; physicochemical waters parameters data collected such as; dissolved oxygen, pH, temperature, brightness, salinity, current speed, nitrate, and phosphate. Identifications and calculations phytoplankton are based on photography under a light microscope. Data were analyzed by calculated abundance, diversity (H′ index) and dominance (C index), and Principal Component Analysis (PCA). There were 24 species of phytoplankton on the all-observation station grouped in three classes, Bacillariophyceae 91.3%, Dinophyceae 9%, and Cyanophyceae 0.1%. The abundance of phytoplankton species obtained in the range of 666.48 to 184,592.68 cells L^?1, were mostly found in high Chaetoceros affinis and Bacteriastrum furcatum. The distribution of phytoplankton abundance in these waters was found to be more influenced by seawater mass than freshwater. Phytoplankton diversity is considered a moderate category (1.37 < H′ < 2.57), and there were no species of phytoplankton that dominates (C < 0.5). Principal component analyzes showed that waters can be classified based on their physical-chemical characteristics, which were temperature, salinity, pH, transparency, current speed in the south coast around river estuaries, while DO and nutrients on the north coast of the waters. Based on the distribution of phytoplankton abundance is illustrated that the northern part is more potential for fishing area than the southern part with an abundance of phytoplankton >90,000 cells L^?1 and more stable water dynamics.     

Assessing ecological water quality of freshwaters: PhyCoI—a new phytoplankton community Index

We propose and test a new Phytoplankton Community Index (PhyCoI) for monitoring the ecological status of lakes and reservoirs. The design of our PhyCoI is based on the fact that phytoplankton biomass and community structure respond to changes in water quality (mainly eutrophication) and by themselves also influence water quality. In order to accommodate this double role of phytoplankton as indicator and impact, PhyCoI is based on phytoplankton community properties at different hierarchical levels combining both specific metrics (total biomass, taxonomic group biomass, cyanobacteria contribution, taxonomic group species richness) and new or modified sub-indices. It is calculated from the scores of the different metrics/sub-indices resulting in a final index value in the range from 0 to 5, to assess water quality on the basis of five ecological classes according to the Water Framework Directive (WFD). The test of PhyCoI was based on Carlson's Trophic State Index (TSI_SD) based on water transparency (Secchi depth) in 26 Greek lakes and reservoirs covering the entire spectrum from oligotrophic to hypertrophic. A highly significant relationship at p < 0.001 between the two variables was found, with the values of the PhyCoI declining with increasing TSI_SD. Furthermore, a significant relationship between the PhyCoI and land use types at the watershed of the studied freshwaters was found identifying permanent crops, pastures and shrubs and herbaceous vegetation associations as significant predictors of PhyCoI values. Because of the amount of labor involved in obtaining the PhyCoI we suggest to combine low frequency PhyCoI determinations with a high frequency Secchi depth measurements for practical monitoring purposes.     

Phytoplankton diversity (alpha,beta, and gamma) from the Araguaia River tropical floodplain lakes (central Brazil)

Alpha, beta and gamma are three components of species diversity. Knowing these attributes in floodplain lake phytoplankton communities is vital when selecting conservation areas. Species diversity is commonly used with other taxonomic groups, but rarely with phytoplankton. We compared the number of phytoplankton species (alpha diversity) from 21 Middle Araguaia River floodplain lakes in the 2000 and 2001 rainy and dry seasons. From these samples we estimated complete survey species richness (gamma diversity), quantified differences in species composition between lakes (beta diversity) and assessed the influence of abiotic variables on beta diversity. We recorded a total of 577 taxa. The Sjack1 estimator indicated that 62.31% of taxa were sampled in the 2000 rainy and 67.65% dry seasons, and 68.36% in the 2001 rainy and 73.5% dry seasons. In almost all seasons, alpha diversity negatively correlated with latitude. Beta diversity (β-1) was higher in high water periods, especially in 2000. This may have been caused by isolated heavy rainfall, which would have increased environmental heterogeneity and raised beta diversity. DCA showed differences in phytoplankton composition between rainy and dry seasons in 2000 and 2001, reflecting the influence of flood pulses on phytoplankton composition. The Mantel test indicated spatial distribution patterns where geographically more distant lakes had less-similar phytoplankton communities. Handling editor: J. Padisak     

Genetic diversity and population structure of Aeromonas hydrophila, Aer. bestiarum, Aer. salmonicida and Aer. popoffii by multilocus enzyme electrophoresis (MLEE)

Genetic diversity, genetic relationship, identification and population structure of 120 Aeromonas strains (including Aer. hydrophila, Aer. bestiarum, Aer. salmonicida and Aer. popoffii) isolated from various sources were studied by analysis of 15 genetic loci by multilocus enzyme electrophoresis (MLEE). All 15 loci were polymorphic, with an average of 9.4 alleles per locus and a mean genetic diversity (H) of 0.64. Cluster analysis defined at H < or = 0.7 differentiated most of the taxa analysed except the Aer. popoffii and Aer. bestiarum strains, which showed a close genetic relationship. Allelic frequencies of five loci (EST1, HEX, IDH, LDH1 and MDH) identified 94% of the strains. The index of association (IA) for the total sample was 2.38 and IA values calculated for the different populations were always significantly different from zero. These results suggest that the population structure of this Aeromonas sample is strongly clonal, confirm the taxonomic status of the analysed species in population genetics terms, and show the usefulness of MLEE for identifying Aeromonas species.     

Carbon:chlorophyll <Emphasis Type="Italic">a</Emphasis> ratio,assimilation numbers and turnover times of Lake Kinneret phytoplankton

Carbon to chlorophyll a (C:Chl) ratios, assimilation numbers (A.N.) and turnover times of natural populations of individual species and taxonomic groups were extracted from a long-term database of phytoplankton wet-weight biomass, chlorophyll a concentrations, and primary production in Lake Kinneret, Israel. From a database spanning more than a decade, we selected data for samples dominated by a single species or taxonomic group. The overall average of C:Chl was highest for cyanophytes and lowest for diatoms, while chlorophytes and dinoflagellates showed intermediate values. When converting chlorophyll a to algal cellular carbon this variability should be taken into account. The variability in C:Chl within each phylum and species (when data were available) was high and the variability at any particular sampling date tended to be greater than the temporal variability. The average chlorophyll a-normalized rate of photosynthetic activity of cyanophytes was higher and that of the dinoflagellates lower than that of other phyla. Turnover time of phytoplankton, calculated using primary productivity data at the depth of maximal photosynthetic rate, was longest in dinoflagellates and shortest in cyanophytes, with diatoms and chlorophytes showing intermediate values. The more extreme C:Chl and turnover times of dinoflagellates and cyanobacteria in comparison with chlorophytes and diatoms should be taken into consideration when employed in ecological modeling.     

Mangrove and coral reef sponge faunas: untold stories about shallow water Porifera in the Caribbean

Sponge faunas from coral reefs and mangrove ecosystems in the Caribbean have mostly been studied from an ecological perspective, with researchers considering the effects of physical and biological factors on their species distribution. To discern evolutionary patterns, this study analyzed the systematic composition, taxonomic diversity, and ecological properties (reproductive strategies, size, shape, endosymbiosis) of mangrove and reef sponge assemblages from seven distant Caribbean localities. Species composition was compared by use of cluster analysis (Sørensen’s), and taxonomic diversity by use of the biodiversity index average taxonomic distinctness (AvTD). Mangrove and reef-associated sponge faunas were found to be statistically dissimilar, with the AvTD values suggesting stronger taxonomic bias toward specific groups in mangroves, irrespective of geographic distance. Most Demospongiae orders have 30–50% more species in coral reefs than in mangroves. The richest reef genera (Agelas, Aplysina, Callyspongia, Petrosia, and Xestospongia) rarely colonize contiguous mangrove formations. The distribution and diversity of suprageneric taxa suggest that coral reef sponge assemblages might represent an older fauna. This historical interpretation would place mangrove subtidal habitats as the youngest marine ecosystem, rather than a below-optimum ecosystem. Life history traits support a biological split discussed here from the perspective of distinct evolutionary histories and different environmental conditions.     

Challenges and prospects for interpreting long‐term phytoplankton diversity changes in Lake Zurich (Switzerland)

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