Composition and trophic structure of a fish community of a clear water Atlantic rainforest stream in southeastern Brazil

As part of a larger project that aimed to determine the factors that regulate fish productivity in a clear water river of the Atlantic rainforest, São Paulo State, Brazil, composition and the trophic structure of the fish community of the middle course of the river were studied from January 1995 to May 1996. Of the 17 species collected, Mimagoniates microlepis, Schizolecis guentheri, Phalloceros caudimaculatus and Kronichthys heylandi accounted for 83.2% of the total fish abundance. Most of the species were insectivorous (35.7%), followed by detritivores (21.4%), benthivores (14.2%), omnivores (14.2%), herbivores (7.1%), and piscivores (7.1%). Results of food overlap analysis as calculated by the Index of Morisita showed that 17.5% of the species pairs overlapped. Habitat segregation, however was observed among most of the species, suggesting some degree of food partitioning. Despite the characteristics of this escarpment river, which produces spates year round, no seasonal variation in diet was observed, suggesting that although food abundance may fluctuate throughout the year, most items are in constant supply. The importance of allochthonous food was considered and it appears that, though only a few species feed on this source (including detritivores), they make up 87.2% of the total fish abundance. The low abundance of most of the fishes, the high number of endemic species and the strong dependence of the species on a few food resources suggest that these systems are sensitive to anthropogenic impacts and require future studies.     

On estimating diversity in species-rich fish assemblages: an example with coral-reef fishes of eastern Indonesia

A new procedure for estimating fish species richness in open or semi-open habitats is presented with unpublished data on the coral-reef fish assemblages of Raja Ampat, eastern Indonesia, known as the centre of marine biodiversity in the western Pacific.     

The effect of fish and aquatic habitat complexity on amphibians

Fish introductions are considered one of the most widespread anthropogenic threats to aquatic ecosystems. Their negative impact on native amphibian communities has received increasing attention in recent years. We investigated the relationship between the introduced fish, emergent vegetation cover and native amphibians in man-made ponds generated by regulation and dam building along the Tarnava Mare Valley (Romania) during the last 40 years. We inventoried amphibians and fish inhabiting 85 permanent ponds and estimated habitat complexity focusing on emergent vegetation cover. Four amphibian species were found to be negatively associated with the presence of predatory fish. Species richness of ponds without fish and ponds without predatory fish did not differ significantly, whereas ponds containing only predatory fish had significantly lower amphibian richness. A significant positive relationship was found between the emergent vegetation cover and pond occupancy of six amphibian species and amphibian species richness. As a management recommendation, we suggest the restriction of fish introductions to non predatory fish and the maintenance of high emergent vegetation cover in the ponds. Handling editor: S. Declerck     

Conservation threats and future prospects for the freshwater fishes of Ecuador: A hotspot of Neotropical fish diversity

Freshwater fish communities in Ecuador exhibit some of the highest levels of diversity and endemism in the Neotropics. Unfortunately, aquatic ecosystems in the country are under serious threat and conditions are deteriorating. In 2018–19, the government of Ecuador sponsored a series of workshops to examine the conservation status of Ecuador's freshwater fishes. Concerns were identified for 35 species, most of which are native to the Amazon region, and overfishing of Amazonian pimelodid catfishes emerged as a major issue. However, much of the information needed to make decisions across fish groups and regions was not available, hindering the process and highlighting the need for a review of the conservation threats to Ecuador's freshwater fishes. Here, we review how the physical alteration of rivers, deforestation, wetland and floodplain degradation, agricultural and urban water pollution, mining, oil extraction, dams, overfishing, introduced species and climate change are affecting freshwater fishes in Ecuador. Although many of these factors affect fishes throughout the Neotropics, the lack of data on Ecuadorian fish communities is staggering and highlights the urgent need for more research. We also make recommendations, including the need for proper enforcement of existing environmental laws, restoration of degraded aquatic ecosystems, establishment of a national monitoring system for freshwater ecosystems, investment in research to fill gaps in knowledge, and encouragement of public engagement in citizen science and conservation efforts. Freshwater fishes are an important component of the cultural and biological legacy of the Ecuadorian people. Conserving them for future generations is critical.     

Extent and role for fish populations of riverine ecotones along the Sinnamary river (French Guiana)

The Sinnamary is a small tropical river (250 km long, watershed of 6500 km²) where a dam is to be impounded in 1994.The extent of naturally periodically flooded areas along the Sinnamary river is estimated by using remote sensing (Landsat TM satellite data) and botanical groupings are described on in situ observations, ground truth and collections. The fish assemblages of these areas are described and their density estimated by rotenone sampling. The role of this ecotone to fish populations is discussed.The extent of the inundated areas appears to be greater than previously estimated by classical mapping.As expected, the fish fauna is mostly composed of fish juveniles and adults of dwarf (< 3 cm) and small (< 15 cm) species. Large predators where not found. Due to these characteristics, fish are abundant but their biomass is low in naturally inundated areas. However, juveniles of some species found only in these zones. Therefore their adult populations will probably be very sensitive to any modification of these land/water ecotones.     

Stream degradation,fish abundance and the potential viability of ornamental fisheries in south-western Cameroon

Fifteen sites on nine second- and third-order streams in the Mount Cameroon area, with varying degrees of human disturbance, were sampled during wet and dry seasons over 21 months in 2003–2005 to estimate their potential for sustainable exploitation of ornamental fishes. In total, 35 species of fish representing 22 genera and 14 families were captured. By biotope, fish populations per 20 m averaged 528 ± 318.5 fish (8.0 ± 3.02 species) in runs, 86 ± 60.9 fish (2.4 ± 1.06 species) in riffles and 819 ± 480.0 fish (7.8 ± 3.15 species) in pools. Riffles contained significantly fewer individuals and species than either runs or pools. Shannon's index was similar for runs and pools, averaging 1.646 ± 0.429 and 1.548 ± 0.345, respectively, but differed significantly for riffles, averaging 0.652 ± 0.473. There were no significant differences in number of individual fish, number of species or Shannon's index among stream order or season, reflecting the stability of these ecosystems throughout the year. Regression of number of fish per 20 linear m of stream, number of species and Shannon's index against a subjective scale related to stream degradation was significant. In particular, the polluted Limbe River sites had significantly fewer individual fish, fewer species and a lower Shannon index across all biotopes than other sites. Fishing efficiency of local gears was estimated at 27% for easily captured species and 14% for the more difficult ones, and could be used to make relative estimates of fish abundance as a means of monitoring changes in fish abundance. Although species diversity in south-western Cameroon was high, typical of tropical streams globally, total abundance was low, and therefore it is unlikely that a profitable ornamental fish trade could be sustained on the basis of fish captured exclusively from the wild.     

An assessment of European pig diversity using molecular markers: Partitioning of diversity among breeds

Genetic diversity within and between breeds (and lines) of pigs was investigated. The sample comprised 68 European domestic breeds (and lines), including 29 local breeds, 18 varieties of major international breeds, namely Duroc, Hampshire, Landrace, Large White and Piétrain, and 21 commercial lines either purebred or synthetic, to which the Chinese Meishan and a sample of European wild pig were added. On average 46 animals per breed were sampled (range 12–68). The genetic markers were microsatellites (50 loci) and AFLP (amplified fragment length polymorphism, 148 loci). The analysis of diversity showed that the local breeds accounted for 56% of the total European between-breed microsatellite diversity, and slightly less for AFLP, followed by commercial lines and international breeds. Conversely, the group of international breeds contributed most to within-breed diversity, followed by commercial lines and local breeds. Individual breed contributions to the overall European between- and within-breed diversity were estimated. The range in between-breed diversity contributions among the 68 breeds was 0.04–3.94% for microsatellites and 0.24–2.94% for AFLP. The within-breed diversity contributions varied very little for both types of markers, but microsatellite contributions were negatively correlated with the between-breed contributions, so care is needed in balancing the two types of contribution when making conservation decisions. By taking into account the risks of extinction of the 29 local breeds, a cryopreservation potential (priority) was estimated for each of them.     

基于环境DNA技术的赤水河秋季鱼类多样性分布特征

赤水河是长江上游少有的仍保持自然流态的大型一级支流,是长江鱼类重要的繁衍场和珍稀物种的保护地,摸清其鱼类多样性现状及鱼类群落结构特征对赤水河水生态恢复评估极为重要。于2021年9月对赤水河流域开展了鱼类多样性、分布及其特征调查,全流域共设置52个采样点,采用环境DNA技术采集并研究了赤水河鱼类的组成及其分布。结果显示通过环境DNA方法共调查到鱼类6目18科62属77种,包含16种长江特有鱼类。以鲤形目为主,占总数的87.87%。赤水河鱼类食性以杂食性和肉食性鱼类为主,群落结构上,处于下层水环境鱼类较多;赤水河鱼类优势种为宽鳍鱲(Y=0.205)、西昌华吸鳅(Y=0.085)、麦穗鱼(Y=0.068)、乌苏拟鲿(Y=0.033)、云南光唇鱼(Y=0.027);赤水河上游和下游鱼类群落(P<0.01)和Shannon-Wiener指数差异均显著(P<0.05)。海拔、流速、pH、电导率和温度是影响赤水河鱼类多样性的主要环境因素。为环境DNA技术在赤水河鱼类多样性调查中的应用提供了探索性研究,将有助于赤水河生物多样性的保护。     

Effect of non-native species on taxonomic and functional diversity of fish communities in different river types

Recent researches suggest that functional diversity represents the response of communities to environmental alterations better than taxonomic diversity. However, there is scarce information about how the functional diversity of freshwater fishes is affected by habitat type and the dominance of non-native species. To address this question, we analysed a large database containing 15 morpho-functional traits of 61 fish species from the Pannon Biogeographic region (Hungary). Based on a fish faunistic list and relative abundance of taxa, we quantified the taxonomic and functional diversity of riverine communities for?>?700 sites of six habitat types. We asked how non-native fishes affected the taxonomic and functional diversity in different river types and at the local scale (i.e. at the site level), and how the diversity measures of native fauna elements changes along the invasion gradient. Our results showed that both functional and taxonomic richness increases with habitat complexity, from small headwater streams to large rivers. Therefore taxonomic diversity served as a good proxy for functional diversity along the environmental gradient of river types. Non-natives showed considerable functional diversity relative to their species number in each habitat type. Diversity values of native fauna elements initially increased, and then showed a major decrease along the invasion gradient. River type-specific evaluations highlighted the importance of considering the proliferation of invasive species based on both taxonomic and functional diversity indices. We argue that type-specific action plans are needed in conservation management to preserve the taxonomic and functional diversity of native fishes in Hungary, but also elsewhere.

     

Habitat use by the fish assemblages of two chalk streams

Patterns of habitat use by fish assemblages in two chalk streams in southern England were examined to identify species preferences with respect to major habitat gradients. Both study sites, although differing in some physical habitat characteristics, mainly channel width, water temperature and instream cover, could be arranged similarly along a continuum extending from erosional to depositional habitats. Twelve fish species were collected from stream surveys conducted during July 1993. The habitat was partitioned into six fish species associations that could be assigned to three habitat guilds: depositional ( Barbatula barbatula, Gasterosteus aculeatus and Anguilla anguilla ), riffle ( Leuciscus leuciscus, Thymallus thymallus and Salmo salar ) and generalist ( Salmo trutta, Phoxinus phoxinus, Gobio gobio, Cottus gobio, Lampetra planeri and Pleuronectes flesus ). At low to moderate densities the different species associations were collected in the same habitat patch, but at higher densities there was a clear tendency to mutual avoidance. In particular, large trout appeared as strong interactors that tended to exclude other species from their territories. It is hypothesized that the fish assemblage of the Mill Stream and Bere Stream have partitioned the habitat in such a way as to minimize potential Competition.     

Fishes and environment in northwestern Argentina: from lowland to Puna

The fish fauna and its relationships with physiography and climate were studied in northwestern Argentina from 21°30′ S to 26°30′ S and 63°30′ W to 65°50′ W, an area about 10,276 km². Along a southeast–northwest gradient, the Chaco forest at low altitudes gives way to the Yungas cloud forest in highlands, and then, to an increasing desertic landscape, with xerophytic vegetation and scarce rainfall along the Grande River. Finally, extreme desert conditions prevail in the most northern part at the Puna plateau. Water chemistry was sampled from sites from 400 to over 3800 m a.s.l. In all 3278 fish specimens of 52 species were collected. Previous lists included 84 species. Only 19 were shared, meaning that 40 species are new for the area and/or particular localities, including 7 reports from Aguas Calientes. These results increase by one third the number of species in northwestern Argentina. The fish fauna was represented by eurytopic species of Paranensean genera as Astyanax, Bryconamericus and other characoids, mixed with locally distributed siluriforms. Under extreme climatic conditions, species of Trichomycterus predominate. Species assemblages show a combination of a large number of species typical of, sometimes endemic to or rather abundant in, the area, combined with a few species of Paranensean character. Fish assemblages were clearly defined by faunistic composition and distribution related with physiography and climate traits. A significant negative correlation is observed between both species number and abundance, and increasing altitude, and positive relationships exist with mean annual temperature and other climate traits. Diversity values (Shannon index) agree with the described pattern of increasing impoverishment of the fish fauna of northwestern Argentina, along gradients of increasing altitude and dryness and decreasing temperature.A first version of this paper was submitted at the XXVII Congress of the Societas Internationalis Limnologiae, Dublin, Ireland, 1998.     

Spatial heterogeneity and habitat configuration overcome habitat composition influences on alpha and beta mammal diversity

The effects of habitat fragmentation on different taxa and ecosystems are subject to intense debate, and disentangling them is of utmost importance to support conservation and management strategies. We evaluated the importance of landscape composition and configuration, and spatial heterogeneity to explain α- and β-diversity of mammals across a gradient of percent woody cover and land use diversity. We expected species richness to be positively related to all predictive variables, with the strongest relationship with landscape composition and configuration, and spatial heterogeneity respectively. We also expected landscape to influence β-diversity in the same order of importance expected for species richness, with a stronger influence on nestedness due to deterministic loss of species more sensitive to habitat disturbance. We analyzed landscape structure using: (a) landscape metrics based on thematic maps and (b) image texture of a vegetation index. We compared a set of univariate explanatory models of species richness using AIC, and evaluated how dissimilarities in landscape composition and configuration and spatial heterogeneity affect β-diversity components using a Multiple Regression on distance Matrix. Contrary with our expectations, landscape configuration was the main driver of species richness, followed by spatial heterogeneity and last by landscape composition. Nestedness was explained, in order of importance, by spatial heterogeneity, landscape configuration, and landscape composition. Although conservation policies tend to focus mainly on habitat amount, we advocate that landscape management must include strategies to preserve and improve habitat quality and complexity in natural patches and the surrounding matrix, enabling landscapes to harbor high species diversity.     

Long-term changes in temperate marine fish assemblages are driven by a small subset of species

The species composition of plant and animal assemblages across the globe has changed substantially over the past century. How do the dynamics of individual species cause this change? We classified species into seven unique categories of temporal dynamics based on the ordered sequence of presences and absences that each species contributes to an assemblage time series. We applied this framework to 14,434 species trajectories comprising 280 assemblages of temperate marine fishes surveyed annually for 20 or more years. Although 90% of the assemblages diverged in species composition from the baseline year, this compositional change was largely driven by only 8% of the species' trajectories. Quantifying the reorganization of assemblages based on species shared temporal dynamics should facilitate the task of monitoring and restoring biodiversity. We suggest ways in which our framework could provide informative measures of compositional change, as well as leverage future research on pattern and process in ecological systems.     

Seeking functional homogeneity: A framework for definition and classification of fish assemblage types to support assessment tools on temperate reefs

Due to their important role in the ecosystem and high economic value, there is a need to assess the effect of anthropogenic impacts on marine fish assemblages. However, this can only be achieved if variations due to natural causes are known. Moreover, while most assessment tools rely on functional traits, bottom-up habitat classification frameworks tend to use species composition. The present study proposes an innovative framework to define fish assemblage types through metric pairwise constrained k-means (MPCK-means) clustering of sites based on functional guild categories and univariate metrics, an approach that takes into account within-site variability due to the sampling method and natural causes. This was followed by a label-based ensemble clustering approach, which finds patterns that minimise information loss when integrating clustering results from individual metrics. In order to test the method, fish assemblages on 14 nearshore rocky reefs along the Portuguese coast were sampled. The final typology configuration achieved through ensemble clustering consisted of three assemblage types and maintained an average normalised mutual information of 0.605 with the individual clustering results. Nested PERMANOVA found differences among types and the most variable metrics in the face of natural variation were identified. Ultimately, a k-nearest neighbours classifier is proposed to label new sites, based only on environmental variables that are unlikely to be directly affected by the presence of anthropogenic impacts. Optimal performance for the classification model was achieved with inverse distance-weighted voting of the 4 nearest neighbours with an average classification accuracy of 96.08%.     

Effect of landscape factors on fish distribution in arctic Alaskan lakes

1. The distribution of species is affected by many factors operating at a variety of temporal and spatial scales in a heterogeneous landscape. In lakes, fish communities are dynamic, influenced by landscape‐level factors that control colonisation and extinction. 2. We used classification and regression tree (CART) analyses to quantify the importance of landscape‐level factors in determining the distribution of fish species in 168 arctic Alaskan lakes. Factors including lake size, depth, outflow gradient, distance to other lakes, lake order, altitude, river drainage and age of glacial surface were analysed. These factors could affect either access of fish to a lake (colonisation variables), or their survival in a lake that already had been colonised (extinction variables). 3. The presence of a species was predicted accurately in 78.4% ± 10.5% (mean ± SD) of cases, and absence in 75.0% ± 6.1% of cases. The relative importance of extinction versus colonisation variables varied with species. Extinction variables were most important for lake trout (Salvelinus namaycush) and slimy sculpin (Cottus cognatus), a mixture of extinction and colonisation variables was important for arctic char (Salvelinus alpinus), and colonisation variables were most important for arctic grayling (Thymallus arcticus) and round whitefish (Prosopium cylindraceum). 4. Ecological differences among species account for much of the difference in relative importance of colonisation versus extinction variables. In addition, stream piracy events have occurred over geologic time scales, which have resulted in lakes that are currently inaccessible but support relict fish populations. 5. Climate warming, currently occurring in the arctic, is likely to alter further the stream network, which could have dramatic effects on fish distributions by affecting access to isolated lakes or isolating lakes that are currently accessible.     

Relationships between fish assemblages, macrophytes and environmental gradients in the Amazon River floodplain

During the flood season of 1992–1993, 139 species of fishes were collected from a floodplain lake system in the central Amazon Basin. Fish species distribution was examined relative to abiotic variables in seven vegetation strata on Marchantaria Island, Solimões River. Both environmental variables and species distributions were influenced by a river channel to floodplain-interior gradient. Species diversity was significantly higher in vegetated areas than in unvegetated areas, with deeper water Paspalum repens stands harbouring the highest diversity. As a result, species richness and catches were positively related to habitat complexity, while catch was also negatively related to dissolved oxygen (DO) and water depth. Low DO and shallow waters appeared to act as a refuge from predation. Fish assemblages were related to water chemistry, but species richness was not. Canonical correspondence analysis provided evidence that floodplain fish assemblages formed by the 76 most common species were influenced by physical variables, macrophyte coverage and habitat complexity, which jointly accounted for 67% of the variance of fish species assemblages. Omnivores showed no pattern relative to the river channel to floodplain-interior gradient while detritivores were more likely to be found at interior floodplain sites and piscivores closer to the river. Piscivores could be further separated into three groups, one with seven species associated with free-floating macrophytes in deep water, a second with five species found in shallow waters with rooted grasses and a third with six open water orientated species. The results suggest that fish assemblages in the Amazon floodplain are not random associations of species.     

Comparative efficiency of clove oil and rotenone for sampling tropical reef fish assemblages

A quantitative examination of the reef fish assemblage at Orpheus Island, Great Barrier Reef, contrasting clove oil and rotenone, sampled 365 individuals of 47 species with clove oil v. 536 individuals of 53 species with rotenone. Number of species and individuals were not found to differ significantly between the two techniques, largely due to variation among samples. Neopomacentrus bankieri (Pomacentridae) and Eviota queenslandica (Gobiidae) were the most dominant in the samples using either technique. Although the samples appeared to be comparable, only 31 species (45%) in eight families were common to both techniques. Fishes often recovered before collection when using clove oil and were not driven out of the reef during induction to anaesthesia. Although the samples collected with clove oil approximate the results obtained using rotenone, enclosed rotenone stations are the preferred method for providing relatively complete quantitative samples.