Inbreeding in Gredos mountain range (Spain): contribution of multiple consanguinity and intervalley variation.

The present paper examines consanguineous marriages occurring between 1874 and 1975 in three valleys (Tormes, Alberche, and Tiétar) in the Sierra de Gredos mountain range, Avila province, Spain. Information was obtained from parish registers of 42 localities, corresponding to a total of 41,696 weddings. Consanguineous marriages were defined as those up to the third degree of consanguinity (second cousins). From 1874 to 1975 the percentage of related mates was 4.45% and the inbreeding coefficient was 0.0011868 (for 1874 to 1917 corresponding figures up to the fourth degree were 16.44% and 0.00 19085, respectively). In order to ascertain the characteristics and evolution of mating patterns in Gredos, the contribution of each degree of kinship was analyzed as a whole and then for each valley separately. Regarding total consanguineous marriages in Gredos, there is a low frequency of uncle-niece matings (0.21%) and a first-second cousin mating ratio (C22/C33) of 0.23 (up to the third degree of consanguinity). Before 1918 multiple matings (i.e., those involving more than a single relationship) accounted for 19.16% of consanguineous marriages (up to the fourth degree). The observed frequencies of multiple consanguineous marriages was, on average, about twice that expected at random, and the proportion of such marriages to total inbreeding was 34.65%. The temporal change of the Gredos inbreeding pattern was characterized by a recent decrease; the highest inbreeding levels correspond to the period from 1915 to 1944. Finally, intervalley differences (maximum inbreeding coefficient in the Tormes, minimum in the Tiétar) are interpreted considering the geography, population size, and population mobility for each valley     

Genetic structure of French populations of the mountain butterfly Parnassius mnemosyne L. (Lepidoptera: Papilionidae)

Geographical variation in allozyme frequencies among 24 populations of the butterfly Parnassius mnemosyne in southern France was studied by enzyme electrophoresis. Clustering procedures were used to define the geographical organization of genetic variation and an analysis of genetic differentiation was performed to test the degree of potential gene flow between the colonies using the methodologies derived from F-statistics and the private alleles model. Further, an approach using reduced space ordinations (factorial analysis of correspondences and discriminant analysis), was used to allow the visualization of genetically intermediate populations and to determine the rôles of individual alleles at various levels of geographical structure. In P. mnemosyne , the effect of both isolation by distance and geographical barriers upon gene flow is complex. Some barriers appear to be very efficient, but others, at least as strong geographically, do not act in such a way. Multivariate analyses underlined the progressive transition between some groups while in other instances, a sharp cut was observed without obvious topographical barriers. Ecogeographical data and historical events (such as colonization processes) should probably be taken into account in order to explain the geographical variation of genetic structure.     

Evolution of consanguinity in a French alpine valley: the Vallouise in the Brianfon region (17th-19th Centuries)

The present study considers the evolution of consanguinity in the Vallouise, a high glacial valley in the French Alps. The genealogical method was used to estimate consanguinity in this Alpine population from the 17th to the 19th centuries. This method was then compared with three other methods used to measure consanguinity. The results indicate that while consanguinity increased through time (marriage dispensations and genealogies), the structural consanguinity (isonymy) was very stable throughout the entire period.     

Population genetic structure and connectivity in the endangered Ethiopian mountain Nyala (Tragelaphus buxtoni): recommending dispersal corridors for future conservation

Habitat fragmentation is an increasing threat to wildlife species across the globe and it has been predicted that future biodiversity will decrease rapidly without the intervention of scientifically-based management. In this study we have applied a landscape genetics approach to suggest a network design that will maintain connectivity among populations of the endangered mountain Nyala (Tragelaphus buxtoni) in the fragmented highlands of Ethiopia. DNA was obtained non-invasively from 328 individuals and genetic population structure and gene flow were estimated using 12 microsatellite markers. In addition, a 475-bp segment of the mitochondrial control region was sequenced for 132 individuals. Potential dispersal corridors were determined from least-cost path analysis based on a habitat suitability map. The genetic data indicated limited gene flow between the sampled mountain Nyala populations of the Bale Massif and the Arsi Massif. The genetic differentiation observed among five sampling areas of the Bale Massif followed a pattern of isolation by distance. We detected no impact of habitat resistance on the gene flow. In the future, however, the current expanding human population in the highlands of Ethiopia may reduce the current mountain Nyala habitat and further limit migration. Hence, maintaining habitat connectivity and facilitating survival of stepping-stone populations will be important for the future conservation of the species. The approach used here may also be useful for the study and conservation of other wildlife species inhabiting areas of increasing human encroachment.     

Genetic structure of mountain lion (Puma concolor) populations in California

Analysis of 12 microsatellite loci from431 mountain lions (Puma concolor)revealed distinct genetic subdivision that wasassociated with geographic barriers andisolation by distance in California. Levels ofgenetic variation differed among geographicregions, and mountain lions that inhabitedcoastal areas exhibited less heterozygositythan those sampled inland. The San FranciscoBay and Sacramento-San Joaquin River Delta, theCentral Valley, and the Los Angeles Basinappeared to be substantial barriers to geneflow, and allele frequencies of populationsseparated by those features differedsubstantially. A partial barrier to gene flowappeared to exist along the crest of the SierraNevada. Estimated gene flow was high amongmountain lions inhabiting the Modoc Plateau,the western Sierra Nevada, and northern sectionof the eastern Sierra Nevada. SouthernCalifornia mountain lion populations mayfunction as a metapopulation; however, humandevelopments threaten to eliminate habitat andmovement corridors. While north-south geneflow along the western Sierra Nevada wasestimated to be very high, projected loss andfragmentation of foothill habitat may reducegene flow and subdivide populations. Preservation of existing movement corridorsamong regions could prevent population declinesand loss of genetic variation. This studyshows that mountain lion management andconservation efforts should be individualizedaccording to region and incorporatelandscape-level considerations to protecthabitat connectivity.     

Local differences in the Archbishopric of Santiago de Compostela (Galicia, Spain) in relation to the consanguinity structure, 1900-1979

The microgeographic variability of consanguinity in the Archbishopric of Santiago de Compostela (Galicia) between 1900 and 1979 was studied. This Archbishopric covers 106 local councils integrated by 964 parishes, of which 677 (70.23%) were analyzed. Of the 307,094 marriages counted within this period, 15,739 corresponded to weddings between biologically related couples. Within the Archbishopric, eight geographical regions were considered: six coastal regions (Golfo Artabro, Berganti?os, Fisterra, Xallas, Santiago Oeste, and Rías Baixas) and two inland regions (Santiago Este and Terra de Montes). In order to evaluate the differences and similarities among them, the frequencies of all types of marriages (consanguineous and nonconsanguineous) were considered. First, a hierarchical grouping of the regions based on their chi-squared distances was performed. Then, in order to analyze relationships that are exclusively due to the structure of consanguinity, a correspondence analysis was performed and only the frequency of the different types of consanguineous marriages was taken into account. The results from both statistical analyses indicate special features of the Xallas region, both in the level of inbreeding (8.75%, the highest in the Archbishopric) and in the structure of consanguinity, for which a high proportion of uncle-niece marriages was found (6.22% of all consanguineous marriages). In all cases the structure of consanguinity provides informative nuances on the differences and similarities among population groups.     

Population structure of Drosophila subobscura: Non-random microdispersion of inversion polymorphism on a mountain slope

On a forested mountain slope in the Swiss Alps gene arrangements of D. subobscura were sampled from altitudes between 600 and 1 900 m above sea level during the years 1977 and 1979. In both years the standard arrangement of chromosome I increased in frequency with altitude. Judging from the pattern of gene arrangement frequencies the population was spatially structured on a fine scale within altitude and on a coarser scale between altitudes. There were temporal changes between years. In spite of the fact that D. subobscura is at its ecological margin at the timberline no evidence of reduced variability was found there.     

Communication Network Reflects Social Instability in a Wild Siamang (Symphalangus syndactylus) Population

International Journal of Primatology - Long-range signaling, such as acoustic communication, is best understood within the broader context of all potential receivers. Exactly what kind of...     

Population structure of spotted salamanders (Ambystoma maculatum) in a fragmented landscape

Understanding the impacts of landscape-level processes on the population biology of amphibians is critical, especially for species inhabiting anthropogenically modified landscapes. Many pond-breeding amphibians are presumed to exist as metapopulations, but few studies demonstrate the extent and consequences of this metapopulation structure. Gene flow measures may facilitate the construction of more realistic models of population structure than direct measures of migration. This is especially true for species that are cryptic, such as many amphibians. We used eight polymorphic microsatellite loci to determine the genetic population structure of spotted salamanders ( Ambystoma maculatum ) breeding at 17 ponds in northeastern Ohio, a landscape fragmented by roads, agriculture, urban areas and the Cuyahoga River. Using a variety of analyses (Bayesian clustering, F -statistics, AMOVA) we generated a model of salamander population genetic structure. Our data revealed patterns of genetic connectivity that were not predicted by geographical distances between ponds (no isolation by distance). We also tested for a relationship between population structure and several indices of landscape resistance, but found no effect of potential barriers to dispersal on genetic connectivity. Strong overall connectivity among ponds, despite the hostile habitat matrix, may be facilitated by a network of riparian corridors associated with the Cuyahoga River; however, high gene flow in this system may indicate a general ability to disperse and colonize beyond particular corridors.     

Population status and structure of mountain nyala in the Bale Mountains National Park, Ethiopia

The study on the population status and structure of mountain nyala (Tragelaphus buxtoni) was carried out in the Bale Mountains National Park, Ethiopia during the wet and dry seasons of 2000/2001. Total counts were carried out in an area of 13.1 km². The count ranged between 682 and 732 individuals. Females comprised 62.9% while males 27.4%. The calf ratio was 9.7%. The group structure of the animals varied with season. Large herds were frequently observed during the wet season and smaller groups during the dry season. Group size changed seasonally. In both seasons, 7–12 individuals were the frequent group size formation. The maximum group (62) was observed during the wet season. The population trend of the animal from 1975 to 1990 indicated a recovery and increase. But between 1990 and 1995 the population showed a continuous and steep decline. However, between 1995 and 2000 the population trend showed a better condition when compared with the previous years.     

Population structure,demography, and dynamics of mountain baboons: An interim report

Counts of 61 baboon troops (Papio cynocephalus ursinus) at four localities in the Drakensberg mountains confirmed earlier reports of a small mean troop size. This troop size of 22.49 animals changed neither with latitude nor elevation. Data from two of the sites suggested that population density increases from south to north, while a working assumption of 2.5 animals/ km² allowed us to set the population size at 7,540 animals, living in 335 troops. Both the adult sex ratio of 2.07 females/male and the immature/ adult female ratio of 1.17 were unaffected by troop size. Repeated counts from nine known troops revealed that the population is at equilibrium. © 1995 Wiley-Liss, Inc.     

Worth a second look: gill structure in Hemipecten forbesianus (Adams & Reeve, 1849) and taxonomic implications for the Pectinidae

The gill of the reef-dwelling Hemipecten forbesianus was examinedusing histology and scanning electron microscopy, in order toverify its reported homorhabdic state, and to provide the firstdetailed information on tropical pectinid gill structure. Dueto the difficulty of obtaining live individuals, museum referencespecimens were used for this study. The gill is heterorhabdic,and presents several notable differences compared to the larger,temperate species studied to date: (1) the small number of ordinaryfilaments per plica (probably associated with the very smallsize of these specimens), (2) the outer demibranch is approximately15% shorter than the inner demibranch, (3) several characteristicswhich confer gill cohesion in other pectinid gills are absentand (4) the principal filaments are devoid of mucocytes, suchthat particle transport of positively-selected particles mustbe entirely effected in water. The apparent universality ofthe heterorhabdic condition within the Pectinidae leads us torecommend its use as a reliable soft-body taxonomic characterat the family level. The anatomical differences between thegill of H. forbesianus and that of the larger, temperate speciescall for further comparison with both large and small, temperateand tropical species, in order to elucidate the effects of sizeand habitat on gill structure in this family. (Received 26 June 2007; accepted 14 January 2008)     

Social and Spatial Segregation in Alpine Ibex (Capra ibex) in Bargy,French Alps

Outside the rut, a gradual social and spatial segregation was observed between the sexes as male Alpine ibex (Capra ibex) aged. In addition, males joined similar-age peer groups and segregated spatially as the age difference increased. The patterns varied seasonally, influenced by biological and ecological events. During the rut, males and females intermingled and used greatly overlapping ranges. Males ≥ 9 years first left female groups but social and spatial segregation were not complete until May. Younger males shifted to male groups more gradually. Females and males over 2 years of age used almost exclusive ranges in summer and early autumn. Social grouping and range overlap between ibex classes were correlated outside the rut. Grouping and spatial overlap between young and old males were negatively related to association with females.     

Population genetic structure of Ceriops tagal (Rhizophoraceae) in Thailand and China

Knowledge of the amount and patterns of genetic variation within and among populations of mangrove trees is essential for devising optimum genetic management strategies for their conservation and sustainable utilization. Ceriops tagal is a widespread viviparous mangrove. Genetic diversity in the species was examined with inter-simple sequence repeat (ISSR). Nine natural populations were collected from Thailand and China. The estimates of genetic variation were extremely low (H_T = 0.0179 ± 0.005, H_S = 0.0084 ± 0.001), and only 47% of the total gene diversity was maintained within populations (G_ST = 0.529). The eastern coastal populations of Thailand were more similar to populations from China than to populations from the western coastline of Thailand. A high level of Nei's genetic identity exists between populations of C. tagal (I = 0.989), suggesting their common ancestry. The low levels of genetic diversity in the species may result from a series of genetic bottlenecks during several glacial epochs.     

Population structure in a saproxylic funnelweb spider (Hexathelidae: Hadronyche) along a forested rainfall gradient

We present research undertaken at Tallaganda State Forest, Australia, describing how current climatic conditions impact upon the saproxylic (decaying wood) habitat and the relationship between this habitat and the demography and morphology of a saproxylic funnelweb spider ( Hadronyche sp.). Climatic data support a north–south habitat cline and, to a lesser extent, a short-range, aspect-driven habitat cline. Rainfall and log moisture content increased with latitude through the forest, and aspect affected the amount of solar radiation penetrating to ground level. The distribution and abundance of Hadronyche varied among sites along both clines in response to several variables. The decay state of logs was highly influential, with wet, highly decayed logs favoured over dry, hard ones. Population density was highest in wetter, southern sites where these logs were abundant, but rare, suitably decomposed logs in dry, northern sites still typically hosted a comparable number of individuals. Morphological measurements showed some phenotypic variation along the north–south habitat gradient, but not over the short-range, aspect-driven gradients. Hadronyche would not be expected to show similarly strong patterns of molecular variation as seen in saproxylic Collembola and Onychophora within Tallaganda as it appears to be more vagile.     

Osteoporosis and cranial asymmetry in a mountain sheep (Ovis canadensis)

The skull of a mountain sheep (Ovis canadensis cremnobates) exhibiting osteoporosis was recovered from San Diego County, California. This specimen also exhibited lateral asymmetry of the cranium and rostrum, malocclusion of molars, and mandibular asymmetry. Investigators are cautioned about potentially confusing lesions associated with chronic frontal sinusitis with lesions of osteoporosis in mountain sheep. To our knowledge this is the first report of osteoporosis in this species.     

Population structure and inbreeding in a rare and declining bumblebee, Bombus muscorum (Hymenoptera: Apidae)

Owing to habitat loss populations of many organisms have declined and become fragmented. Vertebrate conservation strategies routinely consider genetic factors, but their importance in invertebrate populations is poorly understood. Bumblebees are important pollinators, and many species have undergone dramatic declines. As monoandrous social hymenopterans they may be particularly susceptible to inbreeding due to low effective population sizes. We study fragmented populations of a bumblebee species, on a model island system, and on mainland Great Britain where it is rare and declining. We use microsatellites to study: population genetic structuring and gene flow; the relationships between genetic diversity, population size and isolation; and frequencies of (sterile) diploid males - an indicator of inbreeding. We find significant genetic structuring (theta = 0.12) and isolation by distance. Populations > 10 km apart are all significantly differentiated, both on oceanic islands and on the mainland. Genetic diversity is reduced relative to closely related common species, and isolated populations exhibit further reductions. Of 16 populations, 10 show recent bottlenecking, and 3 show diploid male production. These results suggest that surviving populations of this rare insect suffer from inbreeding as a result of geographical isolation. Implications for the conservation of social hymenopterans are discussed.     

Population growth and structure in a variable environment

When a population experiences temporal changes in the vital rates due to environmental or biotic variation, change is not only expected in the rate of population growth but also in the structure of the population. In this study we present a method for transforming observed patterns (notably how vital rates change with temperature) into functions that can be used in population growth models and analysis of population structure. The method is exemplified by applying it to cohort studies in different constant temperatures of four species of aphids, Lipaphis erysimi (K.), Metopolophium dirhodum (Wlk.), Rhopaliosiphum padi and Macrosiphum avenae (F.). We use piece-wise linear functions to transform the vital rates of the cohort studies. The lifespans are divided into phases, each phase having linear rates. A projection matrix is formulated, where the elements are temperature dependent fecundities, survivorships and developmental rates. The major result is, contrary to what theory predicts as reasonable (Caswell 1989), that population structure of these aphid species will become almost fixed although the temperature varies. This result is consistent with findings of earlier field studies (Wiktelius 1982). A fixed population structure implies that it is possible to calculate the population growth rate on the basis of intrinsic rates of increase. By simulating different temperature regimes we also show that initial oscillations in the population structure dampen out after a few days. After initial oscillations, calculations of population growth using intrinsic rates of increase are consistent with calculations made by a matrix model.