携带抗黄矮病基因的中间偃麦草染色体2Ai—2特异的分子标记

小麦－中间偃麦草二体异附加系Ｚ１、Ｚ２具有一对携带抗黄矮病基因的中间偃麦草染色体２Ａｉ－２。利用中间偃麦草（Ｔｈｉｎｏｐｙｒｕｍ ｉｎｔｅｒｍｅｄｉｕｍ （Ｈｏｓｔ） Ｂａｋｗｏｔｈ ａｎｄ Ｄｅｗｅｙ）和拟鹅冠草（Ｐｓｅｕｄｏｒｏｅｇｎｅｉａ ｓｔｒｉｇｏｓａ）基因组ＤＮＡ作探针,对Ｚ１、Ｚ２进行基因组原位杂交分析。结果表明,Ｚ１、Ｚ２附加的一对中间偃麦草染色体２Ａｉ－２为Ｓｔ－Ｅ染色体,Ｅ组染     

携带抗黄矮病基因的中间偃麦草染色体2Ai_2特异的分子标记

The wheat-Thinopyrum intermedium addition lines Z1,Z2 contain a pair of Th. intermedium chromosomes 2Ai-2 carrying the gene with resistance to barley yellow dwarf virus (BYDV). Genomic in situ hybridization (GISH) was used to analyze the chromosome constitution of Z1,Z2 by using genomic DNA probes from Th. intermedium and Pseudoroegneria strigosa. The results showed that the chromosome constitution of either Z1 or Z2 composes of 42 wheat chromosomes and two Th. intermedium chromosomes (2Ai-2). The 2Ai-2 chromosome is St-E intercalary translocation, in which the E genomic chromosome segment translocated into the middle region of the long arm of chromosome belonging to St genome. With the genomic DNA probe of Ps. strigosa, the GISH pattern specific to the 2Ai-2 chromosome may be used as a molecular cytogenetic marker. A detailed RFLP analysis on Z1, Z2 and their parents was carried out by using 12 probes on the wheat group 2 chromosomes. Twenty RFLP markers specific to the 2Ai-2 chromosome were identified. Two RAPD markers of OPR16 –350 and OPH09 -1580, specific to the 2Ai-2 chromosome, were identified from 280 RAPD primers. These molecular markers could be used to assisted-select translocation lines with small segment of the 2Ai-2 chromosome and provide tools to localize the BYDV resistance.     

Reactions in Maize Infected with Swedish Isolates of Barley Yellow Dwarf (BYDV)

Nine cultivars of maize (Zea mays L.) were tested for susceptibility to BYDV under three temperature ranges in the greenhouse. Three Swedish isolates of BYDV were used, two specifically transmitted by Rhopalosiphum padi (L.) (39/78) and by Sitobion avenae (Fabr.) (27/77), respectively, and the third by both species (70). The virus isolates were transmitted successfully from different grasses to maize and from infected maize to the susceptible oat cultivar "Sol II" by the respective aphid species. S. avenae showed very high ability to transmit the S. avenae specific isolate to and from maize plants.
The main symptoms that developed on maize were fine chlorotic irregular spots, reddish purple discoloration and malformed leaves.
The relationship between maize cultivar, temperature and percent of infection is discussed. Enzyme-linked Immunosorbent Assay (ELISA) was used with success to detect the virus isolate 27/77 in susceptible and symptomless maize plants.
Electron microscopy of maize (cv. LG ll) infected with the 27/77 isolate of BYDV revealed virus-like particles, about 22 nm in diameter, in the nuclei of companion cells, in the plasmodesmata connecting companion cells with mature sieve tubes, in the lumen of mature sieve tubes and in xylem tracheal elements.     

Barley Yellow Dwarf Luteovirus (BYDV) Infectivity of Alate Aphid Vectors in Northeast Spain

Rhopalosiphum padi and Sitobion avenae alates were collected from colonised winter cereals and maize in N.E. Spain and fed on young wheat plants for 7–10 days in the glasshouse. Then, aphids were killed and the plants on which aphids reproduced were kept in the glasshouse for 30–40 days. ELISA of infested plants was made using polyclonal and monoclonal antisera against PAV-, RPV- and MAV-like isolates. In autumn and spring, MAV serotypes were transmitted by S. avenae and R. padi , mainly in mixed infections with PAV serotypes. This possibly explains the high frequency of MAV-like isolates and their previously recorded year-to-year stability in maize, grain and forage winter cereals and cereal volunteers. PAV-like isolates were rarely transmitted by S. avenae and its spread thus depends almost exclusively on R. padi. These results confirm the importance of forage cereals and cereal volunteers as virus sources for winter cereal infection in the autumn, and the latter as a source of BYDV for maize in spring.     

小麦黄矮病毒(BYDV)主流株系GPV的鉴定及其提纯研究

经测试结果,小麦黄矮病毒(BYDV)主流株系为麦二岔蚜禾谷缢蚜株系(GPV),普遍分布于我国北方中熟冬麦区、晚熟冬麦区和春麦区;以麦二岔蚜的传播能力最强。由麦二岔蚜优势介体所传播的主流株系GPV,曾导致该病多次大面积流行成灾。并对GPV株系毒源进行了提纯;对其提纯方法有所改进和简化。     

应用原位杂交及RAPD技术标记抗黄矮病小麦一中间偃麦草染色体异附加系

以生物素（Ｂｉｏｔｉｎ－１６－ｄＵＴＰ）标记中间偃麦草基因组 ＤＮＡ为探针,与抗黄矮病小麦－中间偃麦草染色体异附加系Ｚ６进行原位杂交,鉴定出附加的１对中间偃麦草染色体。对异附加系 Ｚ６和 Ｌ１及它们的小麦亲本进行了 ＲＡＰＤ分析,从 １２０个随机引物中,筛选出 ２个引物可以扩增出附加染色体的特异ＤＮＡ片段,可作为鉴定寻人小麦的中间偃麦草染色质的分子标记。     

Growth Regulators and the Effect of Barley Yellow Dwarf Virus on Barley (Hordeum vulgare L.)

Estimation of cell number in the third leaf of barley (Hordeumvulgare L. C I 666) infected with barley yellow dwarf virus(BYDV) showed a marked decrease in the mitotic activity of theinfected plants Assay of endogenous gibberellins revealed adecrease in the level of a substance corresponding to gibberellicacid (GA₃) in BYDV-infected plants No significant differencein the level of endogenous auxins was observed Application ofgibberellic acid to infected plants reversed the dwarfing effectbut the response was not significantly different from the responseof healthy plants and was found to be due to increased cellelongation. It is suggested that the dwarfing of BYDV-infectedplants is a result of reduced mitotic activity This may be relatedto the reduced level of endogenous gibberellins.     

大麦黄矮病毒GAV株系ORF4基因在杆状病毒-昆虫细胞系统中的表达及亚细胞定位

根据已报道的大麦黄矮病毒GAV株系(BYDV-GAV)相关基因序列,利用RT-PCR方法获得ORF4基因。在杆状病毒-昆虫细胞系统中,成功表达了ORF4和GFP（绿色荧光蛋白）的融合蛋白(GFP: ORF4),Western blot检测到目的蛋白的表达。利用激光共聚焦显微镜观察其在细胞中的积累和亚细胞分布,发现ORF4基因编码的17 kD蛋白（P4）能进入细胞核,并在细胞核膜上聚集。通过对ORF4基因编码的P4蛋白的N端和C端缺失突变结合蛋白质的结构预测分析,鉴定出N端α螺旋结构对于P4蛋白的核膜定位是必需的。这些结果为进一步研究ORF4基因在黄矮病毒GAV系统侵染中的生物学功能奠定了基础。     

大麦黄矮病毒GAV株系ORF4基因在杆状病毒-昆虫细胞系统中的表达及亚细胞定位

根据已报道的大麦黄矮病毒GAV株系(BYDV-GAV)相关基因序列,利用RT-PCR方法获得ORF4基因。在杆状病毒-昆虫细胞系统中,成功表达了ORF4和GFP(绿色荧光蛋白)的融合蛋白(GFP:ORF4),Western blot检测到目的蛋白的表达。利用激光共聚焦显微镜观察其在细胞中的积累和亚细胞分布,发现ORF4基因编码的17kD蛋白(P4)能进入细胞核,并在细胞核膜上聚集。通过对ORF4基因编码的P4蛋白的N端和C端缺失突变结合蛋白质的结构预测分析,鉴定出N端α螺旋结构对于P4蛋白的核膜定位是必需的。这些结果为进一步研究ORF4基因在黄矮病毒GAV系统侵染中的生物学功能奠定了基础。     

抗黄矮病小麦-中间偃麦草易位系基因组可转化人工染色体文库的构建及初步筛选

利用抗黄矮病小麦 -中间偃麦草易位系HW6 4 2的细胞核DNA构建了一个可转化人工染色体 (transformation competentartificialchromosome,TAC)文库 ,文库由 2 .3× 10 6 克隆构成 ,重组率为 90 .4 8% ,平均插入片段大小为 2 2kb左右 ,约覆盖普通小麦单倍体基因组 2 .5倍 ,在该文库中分离得到单拷贝DNA序列的几率约是 95 .77%。文库保存在 2 4块 96孔板中 ,每个孔中约含有 10 0 0个不同的重组克隆 ,可以采用PooledPCR的方法对文库进行筛选。用来源于小麦的简单重复序列 (simplesequencerepeat,SSR)引物wms37扩增中间偃麦草、抗病易位系及感病材料 ,得到一条与抗性共分离的特异条带 ,约 4 5 0bp。将此特异标记条带转化为SCAR(sequencecharacterizedamplifiedregion)标记 ,用于筛选HW6 4 2基因组TAC文库 ,得到 12个阳性克隆。对阳性克隆进行了PCR Southern验证 ,以中间偃麦草基因组总DNA为探针与限制酶HindⅢ消化后的阳性克隆杂交 ,其中 10个阳性克隆分别有 1～ 6条杂交带 ,结果表明 ,这 10个阳性克隆可作为抗黄矮病相关基因筛选的候选克隆     

Gene-based high-density mapping of the gene rym7 conferring resistance to Barley mild mosaic virus (BaMMV)

For genetic analysis of Ppd-1 homoeologs controlling photoperiodic response of wheat (Triticum aestivum L.), bulk segregant analysis was performed using a doubled haploid (DH) population derived from a cross of Japanese wheat genotypes Winter-Abukumawase and Chihokukomugi. Based on the segregation of simple sequence repeat markers linked to the Ppd-1 homoeologs, Winter-Abukumawase carried insensitive alleles Ppd-B1a and Ppd-D1a and Chihokukomugi carried a single insensitive allele (Ppd-A1a) that was first found in common wheat. The genomic sequence of Ppd-1 homoeologs including the 5′ upstream region was determined and compared between the two genotypes. Ppd-D1a of Winter-Abukumawase had a deletion of 2,089 bp that was already reported for Ciano 67. Critical sequence polymorphism causing photoperiod insensitivity was not detected from the translation start codon to the 3′ untranslated region of Ppd-A1 and Ppd-B1. However, novel mutations were found in the 5′ upstream region. Ppd-A1a of Chihokukomugi had a deletion of 1,085 bp and Ppd-B1a of Winter-Abukumawase had an insertion of 308 bp. A total of 80 DH lines were classified into eight genotypes by PCR-based genotyping using specific primer sets to detect the In/Dels in the 5′ upstream region of three Ppd-1 genes. The heading dates of the DH lines differed significantly between the eight genotypes, showing that each of the three insensitive alleles accelerates heading by 7–9 days compared with the photoperiod-sensitive genotype. Interaction between the three genes was also significant.     

Comparative RFLP mapping of the chlorotoluron resistance gene (Su1) in cultivated wheat (Triticum aestivum) and wild wheat (Triticum dicoccoides)

Chlorotoluron is a selective phenylurea herbicide widely used for broad-leaved and annual grass weed control in cereals. Variation in the response to chlorotoluron (CT) was found in both hexaploid bread wheat (Triticum aestivum L.) and wild tetraploid wheat (Triticum dicoccoides KöRN.). Here, we describe the comparative mapping of the CT resistance gene (Su1) on chromosome 6B in bread and wild wheat using RFLP markers. In bread wheat, mapping was based on 58 F₄ single-seed descent (SSD) plants of the cross between a genotype sensitive to chlorotoluron, ‘Chinese Spring’ (CS), and a resistant derivative, the single chromosome substitution line, CS (‘Cappele-Desprez’ 6B) [CS (CAP6B). In T dicoccoides, mapping was based on 37 F₂ plants obtained from the cross between the CT-susceptible accession B-7 and the resistant accession B-35. Nine RFLP probes spanning the centromere were chosen for mapping. In bread wheat Su1 was found to be linked to α-Amy-1 (9.84 cM) and Xpsr371 (5.2 cM), both on the long arm of 6B, and Nor2 (2.74 cM) on the short arm. In wild wheat the most probable linkage map was Nor2-Xpsr312-Su1-Pgk2, and the genetic distances between the genes were 24.8cM, 5.3cM, and 6.8cM, respectively. These results along with other published map data indicate that the linear order of the genes is similar to that found in T. aestivum. The results of this study also show that the Su1 gene for differential response to chlorotoluron has evolved prior to the domestication of cultivated wheat and not in response to the development and use of chemicals.     

Mapping of the root lesion nematode ( Pratylenchus neglectus) resistance gene Rlnn1 in wheat

The root lesion nematode, Pratylenchus neglectus, is an economically damaging pathogen of wheat and other crops. The development of P. neglectus-resistant wheat cultivars would be greatly accelerated through the use of molecular markers, as resistance phenotyping is extremely time-consuming. A greenhouse bioassay was developed to identify resistance phenotypes of doubled-haploid populations. Bulked-segregant analysis was used to identify AFLP markers linked to P. neglectus resistance in the wheat cultivar Excalibur. One resistance-linked AFLP marker was mapped close to chromosome 7A RFLP markers in a densely-mapped Cranbrook/Halberd population. One of the chromosome 7A RFLP probes, cdo347, was genotyped in the Tammin/Excalibur population segregating for response to root lesion nematode and showed 8% recombination with the P. neglectus resistance gene Rlnn1. The marker Xcdo347-7A was validated on Excalibur-and Krichauff-derived DH populations segregating for Rlnn1 and showed 14% and 10% recombination, respectively, with Rlnn1 in these populations.     

Strategies for Pyramiding Resistance Genes Against the Barley Yellow Mosaic Virus Complex (BaMMV,BaYMV, BaYMV-2)

Barley Yellow Mosaic Virus disease caused by different strains of BaYMV and BaMMV is a major threat to winter barley cultivation in Europe. Pyramiding of resistance genes may be considered as a promising strategy to avoid the selection of new virus strains and to create more durable resistances. However, this goal cannot be achieved by phenotypic selection due to the lack of differentiating virus strains. For pyramiding of resistance genes rym4, rym5, rym9 and rym11, located on chromosomes 3H and 4H of barley two different strategies have been developed. These strategies are based on doubled haploid lines (DHs) and marker assisted selection procedures. On the one hand F₁ derived DH-plants of single crosses were screened by molecular markers for genotypes being homozygous recessive for both resistance genes. These genotypes were crossed to lines carrying one resistance gene in common and an additional third gene, leading to a DH-population of which 25% carry three resistance genes, 50% have two resistance genes and 25% possess a single resistance gene homozygous recessively. Alternatively, F₁ plants having one resistance gene in common were directly inter-crossed [e.g. (rym4 × rym9) × (rym4 × rym11)] and about 100 seeds were produced per combination. Within these complex cross progenies plants were identified by markers being homozygous at the common resistance locus and heterozygous at the others. From such plants, theoretically present at a frequency of 6.25%, DH-lines were produced, which were screened for the presence of genotypes carrying three or two recessive resistance genes in a homozygous state. Besides DH-plants carrying all possible two-gene combinations, 20 DH-plants out of 107 analysed carrying rym4, rym9, and rym11 and 27 out of 187 tested carrying rym5, rym9, and rym11 homozygously have been detected using the second strategy which is faster but needs co-dominant markers, because in contrast to the first strategy marker selection is carried out on heterozygous genotypes.     

Expanding duplication of the testis PHD Finger Protein 7 (PHF7) gene in the chicken genome

Gene duplications increase genetic and phenotypic diversity and occur in complex genomic regions that are still difficult to sequence and assemble. PHD Finger Protein 7 (PHF7) acts during spermiogenesis for histone-to-histone protamine exchange and is a determinant of male fertility in Drosophila and the mouse. We aimed to explore and characterise in the chicken genome the expanding family of the numerous orthologues of the unique mouse Phf7 gene (highly expressed in the testis), observing the fact that this information is unclear and/or variable according to the versions of databases. We validated nine primer pairs by in silico PCR for their use in screening the chicken bacterial artificial chromosome (BAC) library to produce BAC-derived probes to detect and localise PHF7-like loci by fluorescence in situ hybridisation (FISH). We selected nine BAC that highlighted nine chromosomal regions for a total of 10 distinct PHF7-like loci on five Gallus gallus chromosomes: Chr1 (three loci), Chr2 (two loci), Chr12 (one locus), Chr19 (one locus) and ChrZ (three loci). We sequenced the corresponding BAC by using high-performance PacBio technology. After assembly, we performed annotation with the FGENESH program: there were a total of 116 peptides, including 39 PHF7-like proteins identified by BLASTP. These proteins share a common exon-intron core structure of 8–11 exons. Phylogeny revealed that the duplications occurred first between chromosomal regions and then inside each region. There are other duplicated genes in the identified BAC sequences, suggesting that these genomic regions exhibit a high rate of tandem duplication. We showed that the PHF7 gene, which is highly expressed in the rooster testis, is a highly duplicated gene family in the chicken genome, and this phenomenon probably concerns other bird species.     

Suitability of the biomass crop Miscanthus sinensis as a host for the aphids Rhopalosiphum padi (L.) and Rhopalosiphum maidis (F.), and its susceptibility to the plant luteovirus Barley Yellow Dwarf Virus

1 The reproductive performance of two aphid pest species, Rhopalosiphum padi and Rhopalosiphum maidis, was investigated on two seedling growth stages of Miscanthus sinensis, rhizomatous M. sinensis‘Giganteus’ and barley. Rhopalosiphum padi was unable to complete its development on Miscanthus. Rhopalosiphum maidis was most fecund on rhizomatous plants compared with seedling stages. 2 The ability of R. maidis to transmit the RPV isolate of Barley Yellow Dwarf Virus (BYDV) to M. sinensis seedlings was further investigated. Following successful transmission, host plant symptomology and the effect of infection on the yield of Miscanthus were investigated. Total above soil biomass was reduced by around 23% following infection. 3 The inability of R. padi to utilize Miscanthus is reviewed in light of this species’ origin and inability to utilize C₄ host plants. 4 The potential pest status of R. maidis on Miscanthus is discussed together with the impact that Miscanthus cultivation could have on the ecology of this aphid species and BYDV in the U.K.