Diversity of the cyrtophorid genus Chlamydodon (Protista,Ciliophora): its systematics and geographic distribution,with taxonomic descriptions of three species

The ciliate genus Chlamydodon is characterized by a unique cross-striated band (CSB) along the cell perimeter. To date, more than 15 nominal species have been assigned to this genus, all of which are exclusively from marine or brackish water. In the present work, we have revised the genus according to the available data and suggest an illustrated key to aid species diagnosis. In addition, the systematic relationships of chlamydodontid congeners were analysed based on SSU rRNA gene sequences, indicating that all congeners belong to a well-defined clade. Furthermore, we investigated three species from coastal areas of China, including two new species, Chlamydodon wilberti sp. nov. and C. bourlandi sp. nov., using morphological and phylogenetic criteria. Chlamydodon wilberti sp. nov. is characterized by a cell size of 65–105 × 35–60 µm, a complete CSB, and 38–49 somatic kineties. Chlamydodon bourlandi sp. nov. has a cell size of 150–250 × 65–150 µm, a complete CSB, a reddish to violet cell colour, 83–97 somatic kineties, and 40–68 contractile vacuoles. As a further contribution, a well-studied species, C. triquetrus (Müller, 1786) Kahl, 1931, is also re-described.

www.zoobank.org/urn:lsid:zoobank.org:pub:B83A5466-9D2B-4502-9A23-F16A61D48172.     

Protist diversity and distribution: some basic considerations

This essay discusses protist species number and geographic distribution, both heavily influenced by undersampling and human introductions. The features of the ubiquity model and the moderate endemicity model are compared. I recognize five main flaws of the ubiquity model, viz., the ignorance of the extraordinary possibilities protists have to speciate due to their short generation time and the likelihood that many persisted over geological time scales; that all protist species have high abundances; that their small size is a main reason for global distribution; the ignorance of human introductions; and the rejection of literature evidence on the occurrence of flagship species with restricted distribution in a wide variety of protists. Thus, the data available support the moderate endemicity model which proposes about 300,000 extant, free-living protist species, of which one third might have a restricted distribution, i.e., is not cosmopolitan in spite of suitable habitats. To sum up, the distribution of protists, flowering plants, and larger animals has much in common, but protists usually have wider ranges and thus a higher proportion of cosmopolites. Future research should reconcile morphologic, genetic, and ecological species concepts because this is crucial for determining the number of protist species. Further, greatly intensified research is required on morphospecies in heterotrophic protists because their diversity has never been investigated in large areas of the earth. Special Issue: Protist diversity and geographic distribution. Guest editor: W. Foissner.     

Biogeography of the Helicoidea (Mollusca: Gastropoda: Pulmonata): land snails with a Pangean distribution

The biogeography of helicoid land snails was investigated using cladistic methods. Parsimony analysis under Assumption 0 yielded twelve area cladograms (length=25, c.i.=0.76, r.i.=0.86). The pattern of vicariance for the Helicoidea indicated that families originated with the break up of eastern Gondwana and Laurasia between the late Mesozoic and mid-Tertiary, and possible vicariance events are identified. It is proposed that Asian terranes, located between India and Australia, maintained contact with northern Australia until the late Cretaceous, which is later than is suggested in current palaeogeographical hypotheses.     

Diversity and geographic distribution of benthic foraminifera: a molecular perspective

The diversity and distribution of modern benthic foraminifera has been extensively studied in order to aid the paleoecological interpretation of their fossil record. Traditionally, foraminiferal species are identified based on morphological characters of their organic, agglutinated or calcareous tests. Recently, however, new molecular techniques based on analysis of DNA sequences have been introduced to study the genetic variation in foraminifera. Although the number of species for which DNA sequence data exist is still very limited, it appears that morphology-based studies largely underestimated foraminiferal diversity. Here, we present two examples of the use of DNA sequences to examine the diversity of benthic foraminifera. The first case deals with molecular and morphological variations in the well-known and common calcareous genus Ammonia. The second case presents molecular diversity in the poorly documented group of monothalamous (single-chambered) foraminifera. Both examples perfectly illustrate high cryptic diversity revealed in almost all molecular studies. Molecular results also confirm that the majority of foraminiferal species have a restricted geographic distribution and that globally distributed species are rare. This is in opposition to the theory that biogeography has no impact on the diversity of small-sized eukaryotes. At least in the case of foraminifera, size does not seem to have a main impact on dispersal capacities. However, the factors responsible for the dispersal of foraminiferal species and the extension of their geographic ranges remain largely unknown. Special Issue: Protist diversity and geographic distribution. Guest editor: W. Foissner.     

Global molecular variation of Paramecium jenningsi complex (Ciliophora,Protista): a starting point for further,detailed biogeography surveys

The world’s second stand of P. primjenningsi (Paramecium jenningsi complex, Ciliophora, Protista), heretofore known only from India, has been revealed in Ethiopia (Africa). This finding has enlarged the range of this cryptic species and was a trigger to re-analyse the distribution of all members of the complex (known from ～20 tropical locations). The current survey is an initial one, where, based on haplotype networks, a detailed analysis of the relationship within the P. jenningsi complex has been performed. Although the V4 hypervariable fragment of the SSU rDNA gene is widely used as a first-step barcode marker for microbial HTS analyses, it has provided inconclusive results based on the dataset investigated. However, the ITS1-5.8S-ITS2-5’rDNA and COI mtDNA fragments indicate the possibility of the delimitation of the cryptic species of P. jenningsi (which is crucial from the point of view of metabarcoding surveys). We suppose that future sampling of unexplored, tropical regions will certainly change our knowledge about Paramecium biodiversity and biogeography. This sampling will probably rely on the integration of metabarcodes from environmental DNA studies, with molecular data obtained from identified representatives of particular cryptic species.     

Genetic variation in Ecballium elaterium (Cucurbitaceae): Breeding system and geographic distribution

Dioecy, the separation of sexes, has arisen independently many times in the course of angiosperm evolution. Avoidance of inbreeding is clearly involved in the evolution of dioecy, and as a consequence we predict that dioecious populations should maintain higher levels of genetic variation than closely related nondioecious populations. We tested that prediction by comparing allozymic variation in two closely related taxa, the monoecious and dioecious subspecies of the Mediterranean cucurbit, Ecballium elaterium. Thirteen polymorphic loci were screened for seeds sampled from 10 monoecious and 13 dioecious populations spanning the geographic ranges of the subspecies in Spain. The dioecious subspecies showed strikingly greater allelic diversity and heterozygosity than the monoecious subspecies. A hierarchical F-statistic analysis clearly demonstrated considerable genetic variation within populations for the dioecious populations, whereas for the monoecious populations almost all genetic variation resulted from differences among populations. The general pattern of homozygosity within monoecious populations suggests that they are highly inbred. In order to assess historical influences on current patterns of genetic variation, we conducted a genetic-distance analysis. The observed relationship between genetic distance and geographic distance between populations supports the hypothesis that the subspecies' current allopatric distributions on the Iberian Peninsula are the result of separate waves of colonization from the north (monoecious) and south (dioecious).     

Diversity and distribution of Collembola (Arthropoda: Hexapoda) of Brazil

Objectives of this study are to summarize the current state of knowledge of the diversity and distribution of Collembola in Brazil; to identify areas of most importance, interest, and need of additional research; and to enable development of experimental hypotheses for future research on Collembola in this region. The total number of collembolan species currently known from Brazil is 199, distributed among 19 families and 80 genera. The greatest numbers of species have been recorded from the states of Rio de Janeiro and Amazonas (with 69 and 56 species, respectively). Few or no species are known from most Brazilian states. Most of the species for which specific Brazilian environmental habitat information is available (93, 66%) are known only from forest environments. Most of the species (127, 64%) are known only from Brazil (most likely being endemic); 33 species (17%) are known only from Brazil and other neotropical areas; and 39 species (20%) have a distribution beyond the neotropical region. Results of this study indicate that much remains to be learned about the Brazilian collembolan fauna. This is especially true for areas of the northeastern, central-western, and southern regions. Studies to determine the species composition of collembolan communities in specific environments in Brazil are needed. The great diversity of Collembola species in Brazil is largely unknown and there are many opportunities for additional research on these environmentally important organisms in this area. Such additional research on the Collembola in Brazil is also essential for a better understanding of the neotropical (and world) collembolan fauna.     

Diversity of litter-dwelling beetles in the Ouachita Highlands of Arkansas, USA (Insecta: Coleoptera)

A survey of forest litter-inhabiting Coleoptera was conducted in deciduous forests of the Ouachita Mountains in western Arkansas during 1991–1992. A total of 102 Berlese samples were collected, weighed, and processed during the 12-month study. From 741kg of sifted forest litter, we counted and sorted 10663 adult beetles representing 46 families and 400 species. The family Staphylinidae was taxonomically and numerically dominant, comprising 46% of species and 63% of individuals. Problems in assessing species richness of forest litter Coleoptera faunas result from a lack of taxonomic revisions, occurrence of sex-limited diagnostic characters, and inadequate information about larval-adult species associations and life histories. A randomized species accumulation curve indicated that species addition ranged from 14 species per sample during the first ten samples to 1.5 species per sample during the final ten. Richness estimates generated from the empirical data ranged from 434 species (Michaelis–Menten and Coleman richness estimators) to 590 species (second order jacknife). The area sampled is biogeographically significant because it harbors numerous habitat- restricted species that are endemic to the Ouachita Mountains or the Interior Highland region, as well as disjunct populations of species that are also found in the southern Appalachian Mountains. Deciduous forest habitats of the Ouachita Mountains, particularly beech-maple riparian forest, should be given special consideration in forest conservation planning because of their significance as refugia for these and other endemic and disjunct arthropods.     

Morphology and infraciliature of two new marine urostylid ciliates: Metaurostylopsis struederkypkeae n. sp. and Thigmokeronopsis stoecki n. sp. (Ciliophora, Hypotrichida) from China

ABSTRACT. The morphology and infraciliature of two new marine urostylid ciliates, Metaurostylopsis struederkypkeae n. sp. and Thigmokeronopsis stoecki n. sp., collected from the coastal waters off Qingdao (Tsingtao), China, have been investigated. Metaurostylopsis struederkypkeae n. sp. is characterized by the slender body shape, small size, rose-reddish cell colour, and having two kinds of pigment-like granules. The larger pigment-like granules are yellow–green or grass-green in colour, oval in shape, and flattened, whereas the smaller ones are wine-reddish. Infraciliature and nuclear apparatus are similar to the well-known Metaurostylopsis marina. Thigmokeronopsis stoecki n. sp. is characterized by its large size with dark brown cell colour and grass-green cortical granules, which are large, blood-cell shaped, and sparsely distributed. The thigmotactic ciliature is conspicuous: 11–14 rows of densely arranged cirri occupy the most postoral area. Keys are provided for all the known species in both genera.     

Spatial distribution and diversity of chironomid assemblages in a small hilly stream (Diptera: Chironomidae)

In 2006–2007, spatial variations of chironomid assemblages of a small chalky watercourse were investigated in the hilly region of Balaton Upland, Hungary. Samplings were carried out every three weeks at seven characteristically different sites along the whole length of the watercourse. Altogether 2966 specimens were collected and identified. The chironomid fauna of the stream was relatively rich with 40 taxa belonging to four subfamilies (eight Tanypodinae, one Prodiamesinae, 17 Orthocladiinae, 14 Chironominae). The lowest number of species and number of individuals was found at the spring, and the highest at the middle reach. Based on multivariate analysis the different sections of the creek were characterised by distinctive chironomid communities. Although longitudinal changes in the chironomid community of the Örvényesi creek were detectable due to changes in natural environmental factors, land-use changes also significantly influenced the chironomid community composition and diversity. The natural and anthropogenic effects were hardly distinguishable. Furthermore, we found that the response of different diversity indices to environmental variability was different. This draws attention to the difficulties in evaluating the relationships between stream communities and environmental variables using different diversity indices. The taxonomic diversity, which incorporates the taxonomical relationships between the specimens, proved to be one of the most useful diversity indices to characterise the stream chironomid assemblages.     

Genetic Diversity and Population Structure of Alnus hirsuta (Betulaceae) in Korea

Alnus hirsuta in Korea was measured to estimate the amount and pattern of genetic diversity and population structure. The mean genetic diversity within populations was 0.166. Korean alder populations have slightly high levels of genetic diversity compared to those of two Canadian alder species. The genetic differentiation among populations accounted for 9% of the total variation. The rate of gene flow was estimated high (Nm=2.63). Analysis of inbreeding coefficient, calculated for all polymorphic loci in each population, showed a substantial heterozygote deficiency relative to Hardy-Weinberg expectations. The mean G _ST value of A. hirsuta in Korea was 0.087. The low value of G _ST in this species, reflecting little spatial genetic differentiation, may indicate extensive gene flow. A relationship between the mean heterozygosity and annual rainfall showed a positive relationship (r ²=0.54, F=4.67). Received 8 August 1998/ Accepted in revised form 7 July 1999     

白鱼线粒体DNA控制区结构和种群遗传多样性分析

用特异性引物对白鱼(Anabarilius grahami)DNA进行PCR扩增,获得了白鱼线粒体DNA控制区基因全序列(930bp)。控制区T、C、A和G碱基组成为29.8%、22.5%、33.0%和14.7%。对照其他已报道的鱼类控制区结构,对白鱼控制区结构进行了分析,识别了其终止序列区、中央保守区和保守序列区,找到了终止相关的序列TAS以及保守序列(CSB-F、CSB-D、CSB-1、CSB-2、CSB-3)。同时运用DNA分析软件对白鱼一个驯养种群(中国科学院昆明动物研究所珍稀鱼类繁育中心)及两个自然地理种群(江川县明星鱼洞、江川县牛摩村)进行了遗传多样性分析。结果显示:两个自然种群存在较强基因交流,未出现遗传分化;人工驯养种群遗传多样性最高,种群复壮程度较好。     

Diversity and distribution of freshwater copepods (Crustacea) in southeastern Mexico

Plankton and littoral samples were obtained from several ponds and lagoons of different environments in the Mexican state of Tabasco. These systems are located in the Grijalva-Villahermosa or the Usumacinta basins. Twenty-two copepod species were recorded, most of them cyclopoids with neotropical and Caribbean affinities. Physical and chemical data associated with the species, as well as morphometric parameters of the surveyed systems were measured and analyzed. A correlation was found between diversity and parameters related to the productivity and the shoreline development (D _L) of the systems; therefore the littoral heterogeneity could be used to predict the species number in shallow tropical systems. At a regional level, the Tabasco copepod fauna is similar to that known from the Yucatan Peninsula, but different from the faunal associations of central Mexico. Distributional patterns differed slightly between both basins and appear to be correlated with climatic variations. This first survey of the freshwater copepod fauna in the state of Tabasco shows it to be constituted mainly by neotropical forms.     

小桐子EST-SSR分子标记的开发与种质遗传多样性分析

小桐子（Jatrophacurcm）适应性强,不择土壤,种子油脂性能适宜生物柴油的生产,是重要的生物柴油植物。基于小桐子种子发育过程中的EST序列,采用生物信息学方法,从4640个EST非冗余序列上鉴别了1009个SSR位点并分析其分布特征;开发了11对多态的EST—SSR分子标记,并利用这些分子标记调查了24个不同地理种源的遗传多样性,从每个位点的等位基因数目（2—3,平均为2．45）、期望杂合度（He为0．0887—0．5128,平均是0．2736）、多态信息含量（PIC为0．0847～0．4031,平均是0．2313）等方面反映了小桐子种质的遗传多样性低。进一步分析显示不同地理种源的遗传关系缺乏明显的地理结构。作者开发的EST—SSR分子标记不仅有助于小桐子种质的遗传多样性研究,也有助于小桐子种质间的遗传关系鉴别。     

Freshwater icefishes (Salangidae) in the Yangtze River basin of China: Spatial distribution patterns and environmental determinants

Synopsis We surveyed 86 lakes affiliated to the Yangtze River to assess the status of natural freshwater icefishes, and to study their spatial distribution patterns and environmental relationships. Results showed that the spatial patterns of icefish diversity and the occupancy of each species related closely to the historical process of habitat fragmentation. Statistical analyses indicated that the spatial structure of the icefish assemblage significantly related to the area- and isolation-related environmental variables. These results illustrated the significant impacts of hydrological engineering (dykes and floodgates) on the historical dynamics of the icefish populations, and shed light on the essentiality and feasibility of conserving and wise using freshwater icefishes by managing suitable habitats and re-connecting the river-lake network in the Yangtze River basin.     

Genetic diversity of UPASI tea clones (Camellia sinensis (L.) O. Kuntze) on the basis of total catechins and their fractions

Tea leaf catechins and the ratio of dihydroxylated to trihydroxylated catechin fractions were analysed to identify the genetic diversity of 26 UPASI released tea clones. Principal component analysis (PCA) based on regression factor separated tea clones into five groups according to their jats (Jats are region based rays for e.g., Assam, China and Cambod origin) as well as their quality constituents (such as total polyphenols, total catechins, amino acids in the green leaves and liquor characteristics of black tea), particularly the catechins. Group 1 represented medium quality (quality of the final produce) clones, such as UPASI-10, UPASI-12 and UPASI-15 and drought tolerant clones like UPASI-1, UPASI-2, UPASI-9 and UPASI-10. Group 2 contained purely "China" cultivars while group 3 possessed high quality tea cultivars. "Assam" (group 5) teas had the lowest ratio of dihydroxylated to trihydroxylated catechin fractions (1:4) than the "Chinery" (group 2) teas (1:5). This biochemical differentiation indicated that there is a vast genetic diversity in UPASI released tea clones in terms of catechin fractions, even though the majority of them were selected from one tea estate located in the Nilgiris.