Fluorescence excitation profiles of beta-carotene in solution and in lipid/water mixtures

Intrinsic fluorescence from all-trans β-carotene molecules in solution and embedded in lipid/water mixtures has been observed under laser excitation and its excitation profiles measured. The profiles closely correspond to the absorption spectra. The observations can be explained in terms of a low-lying ¹A_g excited state.     

Fluorescence properties of terbium-alkaline phosphatase.

The addition of Tb³⁺ to apoalkaline phosphatase at pH 8.0 results in the formation of a metalloprotein with an enhanced Tb³⁺ fluorescence at 492, 545, and 580 nm. The Tb³⁺ excitation spectrum is most consistent with a process in which energy is transferred from one or more tyrosyl chromophores to the bound lanthanide. An analysis of the fluorescence data under equilibrium conditions yields one Tb³⁺ binding site per enzyme dimer with a K_n = 0.16 ± 0.02 μm. The Tb³⁺-alkaline phosphatase complex is not catalytically active nor does it incorporate covalently bound phosphate, but the specific activity of Zn²⁺-alkaline phosphatase is significantly enhanced in the presence of Tb³⁺ indicating that this lanthanide mimics Mg²⁺ in stabilizing the structure of alkaline phosphatase. The fluorescence of the Tb³⁺-enzyme is found to be quite sensitive to conformational changes which occur upon addition of Zn²⁺ or substrates.     

Calcium inhibits the heparin-catalyzed antithrombin III/thrombin reaction by decreasing the apparent binding affinity of heparin for thrombin

The present study has shown that calcium inhibits the heparin-catalyzed antithrombin III/thrombin reaction. The initial rate of thrombin (4.0 nM) inhibition by antithrombin III (200 nM) in the presence of heparin (2.5 ng/ml) decreased from 3.6 nM/min (in the absence of calcium) to 0.12 nM/min in the presence of 10 mM calcium. In the absence of heparin, the initial rate of thrombin inhibition by antithrombin III was not affected by calcium. The heparin-catalyzed antithrombin III/thrombin reaction is described by the general rate equation for a random-order, bireactant, enzyme-catalyzed reaction (M. J. Griffith (1982) J. Biol. Chem. 257, 13899-13902). As such, the reaction is saturable with respect to both thrombin and antithrombin III. The apparent kinetic parameters for the heparin-catalyzed antithrombin III/thrombin reaction were determined in the presence and absence of calcium. The apparent heparin/antithrombin III dissociation constant values were not measurably different in the presence of 0, 1.0, and 3.0 mM calcium. The apparent heparin/thrombin dissociation constant value increased from 7.0 nM, in the absence of calcium, to 10 and 30 nM in the presence of 1.0 and 3.0 mM calcium, respectively. The maximum reaction velocity, at saturation with respect to both proteins, was not affected by calcium. It is concluded that calcium binds to functional groups within the heparin molecule which are required for thrombin binding.     

The carotenoid band shift in reaction centers from Rhodopseudomonas sphaeroides

A specific carotenoid associated with reaction centers purified from Rhodopseudomonas sphaeroides shows an optical absorbance change in response to photochemical activity, at temperatures down to 35 K. The change corresponds to a bathochromic shift of 1 nm of each absorption band. The same change is induced by either chemical oxidation or photo-oxidation of reaction center bacteriochlorophyll (P-870). Reduction of the electron acceptor of the reaction center, either chemically or photochemically, does not cause a carotenoid absorbance change or modify a change already induced by oxidation of P-870. The change of the carotenoid spectrum can therefore be correlated with the appearance of positive charge in the reaction center. In these studies we observed that at 35 K the absorption band of reaction center bacteriochlorophyll near 600 nm exhibits a shoulder at 605 nm. The resolution into two components is more pronounced in the light-dark difference spectrum. This observation is consistent with our earlier finding, that the “special pair” of bacteriochlorophyll molecules that acts as photochemical electron donor has a dimer-like absorption spectrum in the near infrared.     

Studies on the reaction with N-bromosuccinimide of fixed 2-phenyl-1,3-dioxolane systems in methyl di-O-benzylidene-α-D-hexopyranosides

The reaction of methyl 2,3:4,6-di-O-benzylidene-α-D-mannopyranoside (5) with N-bromosuccinimide gave mainly three, isomeric dibromo dibenzoates, identified as the 3,6-dibromo-altro (1), 3,6-dibromo-manno (2), and 4,6-dibromo-ido (3) derivatives by subsequent chemical transformation and by extended n.m.r.-spectral studies. The reaction of methyl 2,3:4,6-O-benzylidene-α-D-allopyranoside (22) with N-bromosuccinimide gave two isomeric dibromo dibenzoates, the 2,6-dibromo-altro (23) and 3,6-dibromo-gluco (24) products, and their structures were similarly assigned. A similar reaction-sequence with methyl 2,3:4,6-di-O-benzylidene-α-D-glucopyranoside (32), however, yielded two isomeric monobenzoates 33 and 34, which could be identified straightforwardly. The results are consistent with the intermediate formation of benzoxonium ions that undergo favored axial attack. Thus the observed products and their ratios in reactions of 5 and of 22 with N-bromo-succinimide are explicable. Compound 32, however, does not appear to react by way of an intermediate, five-membered 2,3-trans benzoxonium ion.     

Fluorescence study on the interaction of salicylate with rat small intestinal epithelial cells: possible mechanism for the promoting effects of salicylate on drug absorption in vivo

The water-soluble drug, salicylate, was rapidly taken up by rat small intestinal epithelial cells. Salicylate, known to enhance the absorption of poorly absorbable drugs by rectum and small intestine, caused a significant decrease in the fluorescence polarization of 1,6-diphenyl-1,3,5-hexatriene (DPH) and a slight increase in the fluorescence polarization of 8-anilino-1-naphthalene sulfonic acid (ANS) in the isolated rat small intestinal epithelial cell suspension. An increase in the membrane fluidity of epithelial cells may possibly contribute to the enhancement of drug absorption by salicylate.     

Fluorescence studies of internal rotation in apohemoglobin alpha-chains

The molecular dynamics of the apo alpha-chain of human hemoglobin have been examined using three different fluorescent probes, as well as by circular dichroism. All of these criteria are consistent with a significant loss of organized structure and molecular rigidity for the apo derivative. The apo alpha-chain thus contrasts with the apo beta-chain, which retains considerable rigidity and organized structure.     

Conformational study of α1-acid glycoprotein

The secondary structure of the protein moiety of the α₁-acid glycoprotein (orosomucoid) was evaluated from its primary structure by using the Lim and Chou and Fasman predictions, and the corresponding dichroic spectrum was calculated. The experimental dichroic spectrum of the whole glycoprotein was compared with the summation of (i) the calculated dichroic spectrum due to the protein moiety and (ii) the experimental dichroic spectrum of the carbohydrate moiety. The results are in good agreement with the fact that the carbohydrate moities do not produce any pertubation of the protein conformation. In addition, we observed that four out of five glycan chains are linked to Asn residues which are situated either in a reverse β-turn or in regions where charged and polar residues are numerous, that is, on the outside of the protein.     

The lability of an intermediate of the ribulose bisphosphate carboxylase reaction

Interruption of the catalytic cycle of ribulose-bisphosphate carboxylase by acid denaturation liberated an intermediate with a labile phosphate ester. Addition of fresh, buffered carboxylase enzyme to the acidified carboxylase reaction after 5 s inhibited phosphate release from the intermediate. Therefore, the species with a labile phosphate ester was stable for 5 s in acid and was apparently a substrate for the enzymatic reaction, since the labile intermediate was converted to a stable form by the protein. After acid denaturation, the carboxylated intermediate could be stabilized by reduction after 5 s in acid, but after 1 h no carboxylated intermediate remained. The stoichiometries of phosphate released to enzyme active sites and the carboxylated intermediate trapped to enzyme active sites were approximately 0.04. It was concluded that the labile phosphate species is probably the carboxylated intermediate rather than the enediol(ate) intermediate.The carboxylase and oxygenase reactions were probed for intermediates by the ability of the enzymatic reaction to reduce hexacyanoferrate(III), dichlorophenolindophenol, or nitroblue tetrazolium. Reduction of these reagents and hexacyanoferrate(III)-dependent paracatalytic inactivation were not observed. The copper chelate of lysine, a superoxide dismutase active species, did not selectively inhibit ribulose-bisphosphate oxygenase.     

Cu2+-catalyzed peptide bond formation in the reaction of 5-deoxypyridoxal and α-phenyl-α-aminomalonic acid

The reaction of 5-deoxypyridoxal with α-phenyl-α-aminomalonic acid in the presence of excess Cu²⁺ ions is shown to lead to the formation of N-5-deoxypyridoxoyl-α-phenylglycine, III, as the only 5-deoxypyridoxal-derived product. This reaction occurs anaerobically under very mild conditions of temperature and pH and involves the oxidative formation of a peptide bond. It represents a hitherto undescribed reaction type for vitamin B₆ and its analogs; a mechanism for the reaction is proposed.     

Fluorescence characterization of the low pH-induced change in diphtheria toxin conformation: effect of salt

When injected into rats, a certain amount of mannitol is taken up by the liver and is associated with sedimentable structures. Isopycnic centrifugation in a sucrose gradient shows that a large part of mannitol is present in mitochondria, what remains is located in the lysosomes. The hypotonic release of mannitol present in organelles shows that the polyol is shared between mitochondria and lysosomes. The trapping of mannitol in lysosomes could result from the heterophagic or autophagic function of the lysosomes; the mechanism of its accumulation in mitochondria is still unexplained.     

Effects of electron mediator charge properties on the reaction kinetics of hydrogenase from Chlamydomonas

Anions modulate hydrogenase activity in cell-free preparations of Chlamydomonas reinhardtii, and this modulation is greatly influenced by the charge properties of the redox agent included to mediate electron transfer to hydrogenase. With cationic methyl viologen as the electron mediator, anions stimulate the maximum velocity of H2 production (e.g., a 320% increase in the presence of 1 M NaCl) but have little effect on the Km for methyl viologen. Conversely, when hydrogenase activity is mediated by polyanionic metatungstate or ferredoxin, H2 production is strongly inhibited by anions (e.g., 70-77% inhibition by 0.2 M NaCl). This inhibition is primarily due to a reduced affinity of hydrogenase for these mediators (as evidenced by a large increase in Km values), rather than a change in the maximum velocity of the reaction. Anions have little effect on the kinetics of hydrogenase activity mediated by zwitterionic sulfonatopropyl viologen, a redox agent with a nearly neutral net charge. These results suggest the presence of a cationic region near the active site of hydrogenase. This cationic region, probably due to lysine and/or arginine residues, may serve in vivo to facilitate the interaction between hydrogenase and ferredoxin, the polyanionic, physiological electron mediator.     

1H NMR conformational study of sulfated and non-sulfated cholecystokinin fragment CCK27–33: Influence of the sulfate group on the peptide folding

¹H NMR study of cholecystokinin fragment (CCK_27–33) in (C²H₃)₂SO and in ²H₂O at different pH shows that sulfated (CCK₇) and non sulfated (NS-CCK₇) peptides are under preferentially folded conformations characterized by a β-turn including the sequence Gly-Trp-Met-Asp with a H-bond between the CO of Gly and the NH of Asp. This structure is probably stabilized by an ionic interaction between Tyr and Asp. Moreover, the N-terminal part of CCK₇ forms a C₇ structure with a weak H-bond between the CO of Gly and the NH of Trp. In this model all CCK₇ hydrophobic side chains are in close vicinity, far from the hydrophilic sulfate group. Full interaction with brain CCK₈ receptors could require both the sulfate group and the maintening of conformational constraints.     

Reduction of photosystem I reaction center, P-700, by plastocyanin in stroma thylakoids from spinach: Lateral diffusion of plastocyanin

The reduction kinetics of the photooxidized photosystem I reaction center (P-700⁺) by plastocyanin was studied in the stroma thylakoids prepared by the Yeda press treatment. The kinetics of the P-700⁺ reduction after flash excitation were biphasic and separated into two independent first-order reactions, the fast phase with a half-time of about 4 ms and the slow phase with a half-time of about 18 ms. Only the fast phase of the P-700⁺ reduction was sensitive to KCN and glutaraldehyde treatments of the thylakoids which block the plastocyanin site in the photosynthetic electron flow indicating that the fast phase is mediated by plastocyanin. However, the content of plastocyanin in the stroma thylakoids used was greatly decreased by the Yeda press treatment to only half that of P-700⁺ reduced in the fast phase. This indicates that one plastocyanin molecule turns over more than once in the single turnover of P-700⁺ rather than forming a fixed complex with P-700. On the other hand, the slow phase was not affected by KCN or glutaraldehyde treatment and its apparent rate constant linearly depended on the concentration of reduced dichlorophenolindophenol. These results indicate that the slow phase shows direct reduction of P-700⁺ by dichlorophenolindophenol. A second-order rate constant of 3.96 × 10⁵m^?1 s^?1 was obtained for the slow phase at pH 7.6, 25 °C. Analysis of reaction kinetics in the initial portion of the fast phase indicated initial interaction between P-700⁺ and the reduced plastocyanin and gave a half-time of 0.53 ms for the bimolecular reaction. We assumed the lateral diffusion of plastocyanin on the thylakoid membrane and calculated the two-dimensional diffusion coefficient for plastocyanin from the half-time of the initial reduction of P-700⁺ as about 2 × 10^?9 cm² s^?1.     

Permeabilization of yeast cells: Application to study on the regulation of AMP deaminase activity in situ

A permeabilization method which allows the assay of several intracellular enzymes within the boundaries of the yeast cell wall is described. Toluene treatment was found to make yeast cells completely permeable to exogenous substrates, and intracellular enzymes did not leak out of the treated cells. This method was also compared with the permeabilization techniques reported previously. Electron microscopic examination of toluene-treated cells indicated that they were essentially intact. The kinetic properties of AMP deaminase, examined in the permeabilized cells, including allosteric regulation by polyamine and Zn²⁺, suggest some differences in protein interactions for AMP deaminase in situ and in vitro.     

Coenzyme model reaction in lipid bilayers

Coenzyme model reactions, such as the H⁻ (H⁺ + 2e⁻) transfer from NADH models to triphenyl methane dyes, were investigated in the presence of lipid bilayers, for example, -α-dimyristoyl phosphatidyl choline and egg yolk lecithin. In the temperature dependence of the acceleration effect by the lipid bilayer, discontinuous points were observed, corresponding to the phase transition point such as gel-liquid crystal (T_c) or the segregation point (T_s). The T_c and T_s values of the bilayers varied with the reactant as a result of the difference of perturbing effect on the structure of the bilayers. The pressure effect on the transition point was also studied. Transition points such as T_c or T_s became higher with increasing pressure, and dT_c/dP or dT_s/dP was different for various bilayers. In the gel phase of the membrane, stereospecific reduction of malachite green was observed by chiral nicotinamide: the difference in the catalytic effect on the reduction rate between (R)- and (S)-dihydronicotinamides was larger in the gel phase than that in the liquid crystal phase or in the phase separated state, which suggests that the gel-state molecule can recognize the molecular structure better than the liquid-crystal state molecule.     

The role of the membrane-bound iron-sulphur centres A and B in the Photosystem I reaction centre of spinach chloroplasts

Photosystem I particles prepared from spinach chloroplast using Triton X-100 were frozen in the dark with the bound iron-sulphur Centre A reduced. Illumination at cryogenic temperatures of such samples demonstrated the photoreduction of the second bound iron-sulphur Centre B. Due to electron spin-electron spin interaction between these two bound iron-sulphur centres, it was not possible to quantify amounts of Centre B relative to the other components of the Photosystem I reaction centre by simulating the line-shape of its EPR spectrum. However, by deleting the free radical signal I from the EPR spectra of reduced Centre A alone or both Centres A plus B reduced, it was possible to double integrate these spectra to demonstrate that Centre B is present in the Photosystem I reaction centre in amounts comparable to those of Centre A and thus also signal I ($\text{P-700}$) and X.Oxidation-reduction potential titrations confirmed that Centre A had $\text{E}{}_{\mathrm{<mtext>m</mtext>}}\text{? ?550}\text{mV}$, Centre B had $\text{E}{}_{\mathrm{<mtext>m</mtext>}}\text{? ?585}\text{mV}$. These results, and those presented for the photoreduction of Centre B, place Centre B before Centre A in the sequence of electron transport in Photosystem I particles at cryogenic temperatures. When both A and B are reduced, $\text{P-700}$ photooxidation is reversible at low temperature and coupled to the reduction of the component X. The change from irreversible to reversible $\text{P-700}$ photooxidation and the photoreduction of X showed the same potential dependence as the reduction of Centre B with $\text{E}{}_{\mathrm{<mtext>m</mtext>}}\text{? ?585}$ mV, substantiating the identification of X as the primary electron acceptor of Photosystem I.