National standards: Reasserting the ecological restoration framework in uncertain times

National ecological restoration standards – produced in 2016 through the collaboration of 13 of Australia's leading ecological restoration organisations – are increasingly influencing practitioners. This paper elucidates two of the Key Principles that underpin standards to encourage highest and best efforts across all sectors and help resolve uncertainty about the role of restoration in a changing world.     

Mechanisms for aggregation in animals: rule success depends on ecological variables

Under the threat of predation, animals often group tightly together,with all group members benefiting from a reduction in predationrisk through various mechanisms, including the dilution, encounter-dilution,and predator confusion effects. Additionally, the selfish herdhypothesis was first put forward by Hamilton (1971). He proposedthat in order to reduce its risk of predation, an individualshould approach its nearest neighbor, reducing its risk at theexpense of those around it. Despite extensive empirical support,the selfish herd hypothesis has been criticized on theoreticalgrounds: approaching the nearest neighbor does not result inthe observed dense aggregations, and the nearest neighbor inspace is not necessarily the one that can be reached fastest.Increasingly complex movement rules have been proposed, successfullyproducing dense aggregations of individuals. However, no studyto date has made a full comparison of the different proposedmovement rules within the same modeling environment. Further,ecologically relevant parameters, such as the size and densityof a population or group and the time it takes a predator toattack, have thus far been ignored. Here, we investigate thereduction in risk for animals aggregating using different strategiesand demonstrate the importance of ecological parameters on riskreduction in group-living animals. We find that complex rulesare most successful at reducing risk in small, compact populations,whereas simpler rules are most successful in larger, low-densitypopulations, and when predators attack quickly after being detectedby their prey.     

Spatial patterns of demography and genetic processes across the species' range: Null hypotheses for landscape conservation genetics

Compared with populations near the core of aspecies' range, edge populations tend to becharacterized by low density and high temporalvariation. Based on empirical studiesquantifying this pattern, we show thateffective population size (N_e)could be 2 to 30 times greater near the coreof the species' range than near the edge ofthe range. Hence, the rate of genetic driftmay be 2 to 30 times greater near the edge ofthe range. Despite these strong spatialpatterns in N_e, empirical findingsindicate that peripheral populations sometimeshave less but sometimes have more geneticdiversity than core populations. Our analysisindicates that this variation can be explainedby uncertainty in spatial patterns ofmigration rates. Nevertheless, our analysis:(1) provides a framework or null hypothesis forempirically assessing how spatial patterns ofmigration or selection influence large-scalespatial patterns of genetic diversity, (2)highlights the potential importance ofcontemporary processes, such as spatialpatterns in N_e (cf. historicalphenomena, such as range expansion) in thedevelopment and maintenance of large-scalespatial patterns in genetic diversity, and (3) provides new context for understanding the conservation value and vulnerability of peripheralpopulations. The conservation ofecological/evolutionary processes requiresunderstanding large scale spatial patterns ofdemographic and genetic processes such as thatdescribed here.     

Estimating population density from indirect sign: track counts and the Formozov–Malyshev–Pereleshin formula

For many purposes it is often desirable to estimate animal population densities over large areas. Where total counts are not possible and sightings are relatively rare, a range of methods exists to estimate densities from indirect sign. Such methods are frequently unreliable and usually require independent calibration or confirmation. We present an analytical method for estimating population density from track counts. The method, widely known in the Russian Federation but not in the English language scientific literature, requires counts of tracks of known age, together with estimates of animal daily travel distances. We use simulations to verify the theoretical basis of the approach and to indicate potential precision that may be achieved. We illustrate application of the approach using a large data set on ungulate track counts in the Russian Far East. We suggest that under most circumstances, nonparametric bootstrapping will be the most appropriate method for deriving estimates of confidence intervals about density estimates. As with other approaches to estimating density from indirect sign, the method that we discuss is vulnerable to violations of an array of underlying assumptions. However, it is easily applied and could represent an important method by which the relationship between indices of abundance and absolute density can be understood.     

Natural enemy ravine revisited: the importance of sample size for determining population growth

Abstract. 1. The population growth of three aphid species, Metopolophium dirhodum (Walker), Rhopalosiphum padi (L.), and Sitobion avenae (F.), on winter wheat, was analysed by regression. The calculations were based on censuses of aphids made in 268 plots at 3- or 7-day intervals for 10 years on leaves and 6 years on ears. The calculations were made separately for each plot each year, then repeated on the pooled data from all plots monitored in a year.
2. At the level of individual plots, no population growth was detected at very low densities. At high densities, the populations grew exponentially and the growth rates did not decrease with increasing aphid density.
3. Significant growth was always detected in the pooled data. These growth rates decreased significantly at the highest densities. Field estimates of the intrinsic rate of increase derived from these data ranged from 0.010 to 0.026 for M. dirhodum , 0.0071–0.011 for R. padi , and 0.00078–0.0061 and 0.0015–0.13 for S. avenae , on leaves and ears respectively .
4. The apparent lack of growth in the individual plots at low densities is attributable to small sample size. It is concluded that the natural enemy ravine in the population dynamics of cereal aphids, identified by Southwood and Comins (1976), is a consequence of low population densities at which population increase is undetectable unless very large samples are taken.     

Science and Practice in NRM: Insights from connectivity restoration in the south west slopes of NSW

Interactions between landholders, practitioners and research scientists have greatly influenced landscape restoration activities in South‐eastern Australia. Vegetation connectivity projects undertaken by Holbrook Landcare Network in the Slopes to Summit (S2S) region of South‐eastern Australia have benefitted from the input of both scientists and practitioners. This paper explores what factors support an evidence‐informed restoration outcome, what constrains this and what we can learn from this case.     

Low genetic variability, female-biased dispersal and high movement rates in an urban population of Eurasian badgers Meles meles

1. Urban and rural populations of animals can differ in their behaviour, both in order to meet their ecological requirements and due to the constraints imposed by different environments. The study of urban populations can therefore offer useful insights into the behavioural flexibility of a species as a whole, as well as indicating how the species in question adapts to a specifically urban environment. 2. The genetic structure of a population can provide information about social structure and movement patterns that is difficult to obtain by other means. Using non-invasively collected hair samples, we estimated the population size of Eurasian badgers Meles meles in the city of Brighton, England, and calculated population-specific parameters of genetic variability and sex-specific rates of outbreeding and dispersal. 3. Population density was high in the context of badger densities reported throughout their range. This was due to a high density of social groups rather than large numbers of individuals per group. 4. The allelic richness of the population was low compared with other British populations. However, the rate of extra-group paternity and the relatively frequent (mainly temporary) intergroup movements suggest that, on a local scale, the population was outbred. Although members of both sexes visited other groups, there was a trend for more females to make intergroup movements. 5. The results reveal that urban badgers can achieve high densities and suggest that while some population parameters are similar between urban and rural populations, the frequency of intergroup movements is higher among urban badgers. In a wider context, these results demonstrate the ability of non-invasive genetic sampling to provide information about the population density, social structure and behaviour of urban wildlife.     

Effective population size associated with self-fertilization: lessons from temporal changes in allele frequencies in the selfing annual Medicago truncatula

Despite its significance in evolutionary and conservation biology, few estimates of effective population size (N(e)) are available in plant species. Self-fertilization is expected to affect N(e), through both its effect on homozygosity and population dynamics. Here, we estimated N(e) using temporal variation in allele frequencies for two contrasted populations of the selfing annual Medicago truncatula: a large and continuous population and a subdivided population. Estimated N(e) values were around 5-10% of the population census size suggesting that other factors than selfing must contribute to variation in allele frequencies. Further comparisons between monolocus allelic variation and changes in the multilocus genotypic composition of the populations show that the local dynamics of inbred lines can play an important role in the fluctuations of allele frequencies. Finally, comparing N(e) estimates and levels of genetic variation suggest that H(e) is a poor estimator of the contemporaneous variance effective population size.     

Home ranges in adult Scandinavian brown bears (Ursus arctos): effect of mass, sex, reproductive category, population density and habitat type

Annual home-range size indices for 36 male and 52 female adult brown bears Ursus arctos in two study areas in central and northern Scandinavia were estimated to evaluate factors believed to influence home-range size. Male home ranges were larger than home ranges of lone females after controlling for the sexual size dimorphism acting on metabolic needs. Further, home ranges of females with cubs were smaller than home ranges of lone females and females with yearlings. Thus, differences in metabolic need were not able to explain the variation in range size among females of different reproductive categories or between males and females, suggesting roaming behaviour of males in this promiscuous species. Home-range size in both males and females was inversely related to population density along a density gradient that was not linked to food availability. This contradicts the hypothesis that females use the minimum areas that sustain their energy requirements. However, on a large geographical scale a negative relationship between range size and food availability was evident. The annual home ranges in inland boreal environments in Scandinavia are the largest reported for brown bears in Eurasia, and similar to those in inland boreal and montane environments in North America.     

Living in the branches: population dynamics and ecological processes in dendritic networks

Spatial structure regulates and modifies processes at several levels of ecological organization (e.g. individual/genetic, population and community) and is thus a key component of complex systems, where knowledge at a small scale can be insufficient for understanding system behaviour at a larger scale. Recent syntheses outline potential applications of network theory to ecological systems, but do not address the implications of physical structure for network dynamics. There is a specific need to examine how dendritic habitat structure, such as that found in stream, hedgerow and cave networks, influences ecological processes. Although dendritic networks are one type of ecological network, they are distinguished by two fundamental characteristics: (1) both the branches and the nodes serve as habitat, and (2) the specific spatial arrangement and hierarchical organization of these elements interacts with a species' movement behaviour to alter patterns of population distribution and abundance, and community interactions. Here, we summarize existing theory relating to ecological dynamics in dendritic networks, review empirical studies examining the population- and community-level consequences of these networks, and suggest future research integrating spatial pattern and processes in dendritic systems.     

Estimating effective population size from linkage disequilibrium: severe bias in small samples

Effective population size (N _e) is a central concept in evolutionary biology and conservation genetics. It predicts rates of loss of neutral genetic variation, fixation of deleterious and favourable alleles, and the increase of inbreeding experienced by a population. A method exists for the estimation of N _e from the observed linkage disequilibrium between unlinked loci in a population sample. While an increasing number of studies have applied this method in natural and managed populations, its reliability has not yet been evaluated. We developed a computer program to calculate this estimator of N _e using the most widely used linkage disequilibrium algorithm and used simulations to show that this estimator is strongly biased when the sample size is small (<‰100) and below the true N _e. This is probably due to the linkage disequilibrium generated by the sampling process itself and the inadequate correction for this phenomenon in the method. Results suggest that N _e estimates derived using this method should be regarded with caution in many cases. To improve the method’s reliability and usefulness we propose a way to determine whether a given sample size exceeds the population N _e and can therefore be used for the computation of an unbiased estimate.     

Interplay between ecological, behavioural and historical factors in shaping the genetic structure of sympatric walleye populations (Sander vitreus)

Disentangling ecological, behavioural and evolutionary factors responsible for the presence of stable population structure within wild populations has long been challenging to population geneticists. This study primarily aimed at decoding population structure of wild walleye (Sander vitreus) populations of Mistassini Lake (Québec, Canada) in order to define source populations to be used for the study of spatial partitioning using individual-based multilocus assignment methods, and decipher the dynamics of individual dispersal and resulting patterns of spatial resource partitioning and connectivity among populations. A second objective was to elucidate the relationships between biological characteristics (sex, size, age and population of origin) and an individual's probability to migrate and/or disperse. To do so, a total of 780 spawning individuals caught on five distinct spawning sites, and 1165 postspawning individuals, captured over two sampling seasons (2002-2003) were analysed by means of eight microsatellite loci. Four temporally stable walleye populations associated with distinct reproductive grounds were detected. These populations were differentially distributed among lake sectors during their feeding migration and their spatial distribution was stable over the two sampling seasons. Dispersing individuals were identified (n=61); these revealed asymmetrical patterns of dispersal between populations, which was also confirmed by divergent admixture proportions. Regression models underlined population of origin as the only factor explaining differential dispersal of individuals among populations. An analysis of covariance (ancova) indicated that larger individuals tended to migrate from their river of origin further away in the lake relative to smaller fish. In summary, this study underlined the relevance of using individual-based assignment methods for deciphering dynamics of connectivity among wild populations, especially regarding behavioural mechanisms such as differential spatial partitioning and dispersal responsible for the maintenance of genetic population structure.     

中国野牦牛现状研究

根据１９８７～１９９０年在西藏的野外调查资料和７５２ｋｍ长的调查样线以及调查中所遇见的２６７头野牦牛,采用截线抽样法,以直方图截舍法确定其探测函数,计算出了野牦牛在西藏的平均分布密度为０．０７９头／ｋｍ２,每群平均头数为１２．７１头,种群数量达７９５９±８０２头,分布面积为１０万ｋｍ２,加上新疆３０３１头（或１００００头）,甘肃１０３头和青海４０９２头,则中国野牦牛总数为１５０００～２００００头,分布总面积为４６６０００ｋｍ２以上．目前其分布区已被分割为５个较孤立的区域,整个种群呈急剧下降趋势,亟待人类采取有效措施,防止分布区的进一步分割并制止捕杀,切实保护好现有资源     

Variation in life-history characteristics among populations of North American wood turtles: a view from the north

Life-history traits such as age at maturity, body size and clutch size tend to vary across a species' distribution. The purpose of our study was to describe the demography of a newly discovered population of North American wood turtles Glyptemys insculpta at the species' northern range limit, and to compare our findings to those of other studies to test hypotheses about adaptive life-history variation. Turtles were hand-captured from May to October 2005 and 2006 along a 4.5 km stretch of river located in the Sudbury District, ON, Canada (46°N). Fifty-five captured individuals provided a population density estimate of 1.3 turtles/100 m of river. Juveniles comprised 35% of wood turtles captured, and growth ring counts (i.e. age estimates) indicated recruitment in each of the past 11 years. Among populations, we found a nonlinear pattern in body size variation with the largest turtles in the north, smallest turtles in the centre of the range, and intermediate-sized turtles in the south. This nonlinear pattern in body size was reflected in clutch size variation. Selective pressures to overcome years of low recruitment may have resulted in larger body sizes and hence large clutch sizes at northern latitudes while conspecifics at southern latitudes can achieve larger body sizes because they live in a more productive environment. Population density decreased with latitude, likely as a result of a gradient in habitat productivity.     

Fecundity and size in the housefly: investigations of some environmental sources and genetic correlates of variation

Environmental sources and genetic correlates of variation in fecundity and size were studied in field and laboratory housefly populations in central Iowa, U.S.A. Electrophoresis of enzymatic proteins was used to monitor genotypes and heterozygosity. In the field, mean fecundity declined as adult densities increased. Fecundity varied greatly within breeding seasons. Fly body size varied spatially and temporally during summer and winter. Fecundity and size were positively correlated. Size was independent of genotypes at the six loci studied. No relationship was observed between heterozygosity and the magnitude or variability of body size.     

Patchy population structure in a short-distance migrant: evidence from genetic and demographic data

Species often occur in subdivided populations as a consequence of spatial heterogeneity of the habitat. To describe the spatial organization of subpopulations, existing theory proposes three main population models: patchy population, metapopulation and isolated populations. These models differ in their predicted levels of connectivity among subpopulations, and in the risk that a subpopulation will go extinct. However, spatially discrete subpopulations are commonly considered to be organized as metapopulations, even though explicit tests of metapopulation assumptions are rare. Here, we test predictions of the three models on the basis of demographic and genetic data, a combined approach so far surprisingly little used in mobile organisms. From 2002 to 2005, we studied nine subpopulations of the wetland-restricted reed bunting ( Emberiza schoeniclus ) in the southeastern part of the Canton Zurich (Switzerland), from which local declines of this species have been reported. Here, wetlands are as small as 2.7 ha and separated through intensively used agricultural landscapes. Demographic data consisted of dispersal of colour-banded individuals among subpopulations, immigration rates and extinction-/recolonization dynamics. Genetic data were based on the distribution of genetic variability and gene flow among subpopulations derived from the analysis of nine microsatellite loci. Both demographic and genetic data revealed that the patchy population model best described the spatial organization of reed bunting subpopulations. High levels of dispersal among subpopulations, high immigration into the patchy population, and genetic admixture suggested little risk of extinction of both subpopulations and the entire patchy population. This study exemplifies the idea that spatially discrete subpopulations may be organized in ways other than a metapopulation, and hence has implications for the conservation of subpopulations and species.     

Large-scale spatial variation in the breeding performance of song thrushes Turdus philomelos and blackbirds T. merula in Britain

1.  Spatial variation in breeding performance is of critical importance in understanding the large-scale distribution and abundance of living species, and in understanding species conservation. We studied the large-scale spatial variation in reproductive output of two species of declining British bird, the song thrush Turdus philomelos and the blackbird Turdus merula .
2.  We developed a method to predict spatial variation in reproductive output. Brood size and nest failure rates during the incubation and nestling periods were related to environmental factors using generalized linear models. Predicted values obtained from these models were combined to give values of number of fledglings produced per nesting attempt for 10-km squares throughout Britain.
3.  We observed substantial spatial variation in reproductive output for both species; the component that varied most was nest failure rate during incubation. We were more successful in relating environmental factors to spatial variation in reproductive output for song thrush than for blackbird.
4.  Reproductive output in both species was affected mainly by factors that vary on a small spatial scale. Nest failure rate during incubation increased significantly where corvids were more abundant, suggesting a role for avian nest predators in determining spatial variation in reproductive output.
5.  Our approach can be extended readily to other species of birds, to other taxonomic groups and to finer spatial scales. Such models could be used to evaluate the implications of current and proposed wider countryside management for spatial variation in breeding performance. Evaluations based on breeding success as well as numbers are likely to be more robust than those based solely on abundance.