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1.
Satish K. Verma Kathryn Kingsley Marshall Bergen Camille English Matthew Elmore Ravindra N. Kharwar James F. White 《Plant and Soil》2018,422(1-2):223-238
Background and Aims
Leersia oryzoides, a wild relative of rice (Oryza sativa), may carry potential seed-borne bacterial endophytes which could be used to enhance growth of rice. We hypothesized that seed-associated bacteria from L. oryzoides would be compatible with rice and promote seedling growth, development, and survival.Methods
We isolated bacteria from seed of L. oryzoides and checked compatibility with rice as well as Bermuda grass seeds for seedling growth promotion. Internal colonisation of bacteria into root cells was observed by ROS staining and microscopic observation. Growth promoting bacteria were evaluated for IAA production, phosphate solubilization and antifungal activities.Results
Overall, ten bacteria were found to be growth promoting in rice seedlings with effects including restoration of root gravitropic response, increased root and shoot growth, and stimulation of root hair formation. All bacteria were identified by 16S rDNA sequencing. Six bacteria were found to become intracellular in root parenchyma and root hairs in rice and in Bermuda grass seedlings. Six bacteria were able to produce IAA in LB broth with highest (47.06 ± 1.99 μg ml?1) by LTE3 (Pantoea hericii). Nine isolates solubilized phosphate and inhibited at least one soil borne fungal pathogen.Conclusions
Seed bacteria of L. oryzoides are compatible with rice. Many of these bacteria become intracellular, induce root gravitropic response, increase root and shoot growth, and stimulate root hair formation in both rice and Bermuda grass seedlings. Presence of bacteria protects seedlings from soil pathogens during seedling establishment. This research suggests that bioprospecting microbes on near relatives of rice and other crop plants may be a viable strategy to obtain microbes to improve cultivation of crops.2.
Heidi A. Waddell Richard J. Simpson Megan H. Ryan Hans Lambers Denys L. Garden Alan E. Richardson 《Plant and Soil》2017,412(1-2):7-19
Aims
Rytidosperma species are native Australian grasses which have different growth rates and phosphorus (P) requirements. This study examined the role of root morphology traits in response to P supply.Methods
Nine Rytidosperma species ranging from slow- to fast-growth were examined along with Lolium perenne and Bromus hordeaceus. Plants were grown in a glasshouse for 47 days in soil supplied with six levels of P between 0 and 60 mg P per pot. Root mass, length and diameter, root hair length and density, and extent of mycorrhizal colonisation were measured.Results
Across all species there was a positive correlation (P < 0.001) between P uptake and root mass, length and root hair cylinder volume (RHCV; estimated using root diameter, root hair length and root length) at all levels of P supply. An exception was the RHCV of B. hordeaceus, where expected P uptake was not achieved due to a markedly reduced root length at low-P supply. For the Rytidosperma species, morphological plasticity for specific root length, root mass fraction and root hair length ranged from 1.5-fold to 2.7-fold between high- and low-P supply. However, across all species and P levels no single root morphological trait was identified for universally increasing the size of the root system and P uptake.Conclusions
Fast-growing species took up more P as a result of an overall larger root mass, greater root length and larger RHCV.3.
Background and aims
Layered profiles of designed soils may provide long-term benefits for green roofs, provided the vegetation can exploit resources in the different layers. We aimed to quantify Sedum root foraging for water and nutrients in designed soils of different texture and layering.Methods
In a controlled pot experiment we quantified the root foraging ability of the species Sedum album (L.) and S. rupestre (L.) in response to substrate structure (fine, coarse, layered or mixed), vertical fertiliser placement (top or bottom half of pot) and watering (5, 10 or 20 mm week?1).Results
Water availability was the main driver of plant growth, followed by substrate structure, while fertiliser placement only had marginal effects on plant growth. Root foraging ability was low to moderate, as also reflected in the low proportion of biomass allocated to roots (5–13%). Increased watering reduced the proportion of root length and root biomass in deeper layers.Conclusions
Both S. album and S. rupestre had a low ability to exploit water and nutrients by precise root foraging in substrates of different texture and layering. Allocation of biomass to roots was low and showed limited flexibility even under water-deficient conditions.4.
Pei-Chun Lisa Hsu Maureen O’Callaghan Leo Condron Mark R. H. Hurst 《Plant and Soil》2018,425(1-2):43-55
Aims
The mechanisms by which rhizosphere bacteria increase the availability of mineral P precipitates for plant use are understudied. However, Paraburkholderia bryophila Ha185 is known to solubilize inorganic phosphate in vitro via a novel process. Therefore, this study aimed to demonstrate P solubilization by Ha185 in association with roots of perennial ryegrass (Lolium perenne L.).Methods
We developed a gnotobiotic plant assay to assess P solubilization by Ha185 on ryegrass roots under various nutrient conditions. A green fluorescent protein (GFP)-tagged derivative of Ha185 was used in conjunction with fluorescent microscopy and confocal microscopy to visualize colonization of ryegrass roots.Results
Ha185 solubilized mineral P (hydroxyapatite) in association with ryegrass roots and increased ryegrass growth by 20% under P-limited conditions. The GFP-tagged Ha185 strain colonized the rhizoplane and penetrated the primary root of ryegrass, possibly through “crack entry” at the point of lateral root emergence, but also by entering the epidermal cells via root hairs.Conclusions
Ha185 supported ryegrass growth under P-limited conditions, indicating this strain may improve availability of soil P for uptake by ryegrass. Tools developed in this study have broad application in the study of rhizobacteria-plant interactions.5.
Aims
Forests induce a mechanical reinforcement of soil, generally quantified in terms of additional root cohesion (c r ), which decreases due to root decay after felling. The aim of this work is providing new field data on soil reinforcement by roots after trees cutting.Methods
The present work investigated c r decay in a mixed Silver Fir-Norway Spruce (Abies alba Mill. Picea abies (L.) Karst.) stand in the Italian Alps over a period of 3 years after felling by monitoring the two c r driving variables: root tensile resistance and root density.Results
Results showed that a significant difference in root resistance occurred only 3 years after felling, whereas the decrease in the number of roots was significant in the second year. The degradation process was more rapid in shallower layers and for thinner roots, as a consequence of the pattern of biological activity rate. The reduction of c r after felling was, for a reference profile depth of 70 cm, 55 % in the first 2 years and another 16 % in the third year.Conclusions
The findings of this study, providing new data on the decrease of c r after felling, can be introduced into geotechnical models allowing a better estimation of the stability of forest hillslopes.6.
7.
Thijs Welle Anna T. Hoekstra Ineke A. J. J. M. Daemen Celia R. Berkers Matheus O. Costa 《Metabolomics : Official journal of the Metabolomic Society》2017,13(7):83
Introduction
Swine dysentery caused by Brachyspira hyodysenteriae is a production limiting disease in pig farming. Currently antimicrobial therapy is the only treatment and control method available.Objective
The aim of this study was to characterize the metabolic response of porcine colon explants to infection by B. hyodysenteriae.Methods
Porcine colon explants exposed to B. hyodysenteriae were analyzed for histopathological, metabolic and pro-inflammatory gene expression changes.Results
Significant epithelial necrosis, increased levels of l-citrulline and IL-1α were observed on explants infected with B. hyodysenteriae.Conclusions
The spirochete induces necrosis in vitro likely through an inflammatory process mediated by IL-1α and NO.8.
N transfer in three-species grass-clover mixtures with chicory,ribwort plantain or caraway 总被引:1,自引:0,他引:1
Nawa Raj Dhamala Jim Rasmussen Georg Carlsson Karen Søegaard Jørgen Eriksen 《Plant and Soil》2017,413(1-2):217-230
Background and aims
There is substantial evidence that legume-derived Nitrogen (N) is transferred to neighboring non-legumes in grassland mixtures. However, there is sparse information about how deep rooted non-legume forage herbs (forbs) influence N transfer in multi-species grasslands.Methodology
Red clover (Trifolium pretense L.) was grown together with perennial ryegrass (Lolium perenne L.) and one of three forb species: chicory (Cichorium intybus L.), ribwort plantain (Plantago lanceolata L.) or caraway (Carum carvi L.) in a field experiment. During the first year after the establishment, red clover leaves were labeled with 15N-urea to determine the N transfer from red clover to companion ryegrass and forbs.Results
On an annual basis, up to 15 % of red clover N was transferred to the companion ryegrass and forbs, but predominantly to the grass. The forb species did not differ in their ability to take up clover N, but biomass production and soil N acquisition was higher in chicory and plantain than in caraway.Conclusions
Grass relied to a great extent on clover N, whereas forbs relied on soil N. Soil 15N-enrichment indicated that N transfer occurred in the upper soil layers and that a dependence on clover-derived N did not necessarily give grass a growth advantage.9.
Nicholas J. Bond Albert Koulman Julian L. Griffin Zoe Hall 《Metabolomics : Official journal of the Metabolomic Society》2017,13(11):128
Introduction
Mass spectrometry imaging (MSI) experiments result in complex multi-dimensional datasets, which require specialist data analysis tools.Objectives
We have developed massPix—an R package for analysing and interpreting data from MSI of lipids in tissue.Methods
massPix produces single ion images, performs multivariate statistics and provides putative lipid annotations based on accurate mass matching against generated lipid libraries.Results
Classification of tissue regions with high spectral similarly can be carried out by principal components analysis (PCA) or k-means clustering.Conclusion
massPix is an open-source tool for the analysis and statistical interpretation of MSI data, and is particularly useful for lipidomics applications.10.
Korey J. Brownstein Mahmoud Gargouri William R. Folk David R. Gang 《Metabolomics : Official journal of the Metabolomic Society》2017,13(11):133
Introduction
Botanicals containing iridoid and phenylethanoid/phenylpropanoid glycosides are used worldwide for the treatment of inflammatory musculoskeletal conditions that are primary causes of human years lived with disability, such as arthritis and lower back pain.Objectives
We report the analysis of candidate anti-inflammatory metabolites of several endemic Scrophularia species and Verbascum thapsus used medicinally by peoples of North America.Methods
Leaves, stems, and roots were analyzed by ultra-performance liquid chromatography-mass spectrometry (UPLC-MS) and partial least squares-discriminant analysis (PLS-DA) was performed in MetaboAnalyst 3.0 after processing the datasets in Progenesis QI.Results
Comparison of the datasets revealed significant and differential accumulation of iridoid and phenylethanoid/phenylpropanoid glycosides in the tissues of the endemic Scrophularia species and Verbascum thapsus.Conclusions
Our investigation identified several species of pharmacological interest as good sources for harpagoside and other important anti-inflammatory metabolites.11.
Orpheus M. Butler Mehran Rezaei Rashti Tom Lewis James J. Elser Chengrong Chen 《Plant and Soil》2018,431(1-2):191-202
Background and aims
The current study was undertaken to investigate the mechanism underlying Boron (B)-alleviated phosphate (P) deficiency in Arabidopsis thaliana. Furthermore, we were interested to explore whether this alleviation of P deficiency by B could extend to Brassica crops.Methods
Arabidopsis thaliana or Brassica oleracea plants were grown under P-sufficient or -deficient condition with or without extra B for 7 days, then shoots and roots of B. oleracea were sampled for analysis of soluble P content while those of A. thaliana were harvested for analysis of total P content, soluble P content and nitric oxide (NO) as well as for cell wall extraction and RNA isolation.Results
A. thaliana plants showed reduced root growth and decreased P content in the root under P-deficient conditions, but improved root growth when supplemented with additional B. Further analysis revealed that exogenous B elevated the cell wall pectin content and facilitated the release of P in P-deficient seedlings, thus more soluble P was available to sustain growth under P deficiency. Furthermore, B supplement also increased soluble P in P-deficient cabbage (Brassica oleracea var. capitata L.), an economically important vegetable crop. P deficiency alone was sufficient to induce NO accumulation, and in combination with B application further enhanced NO accumulation, while exogenous application of NO scavenger c-PTIO [2-(4-carboxyphenyl)-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide] counteracted this positive effect of B, indicating that NO is positively involved in B-mediated alleviation of P deficiency.Conclusions
Our study reveals the critical role of B in improving the growth of P-deficient plants, and also provides evidence implicating the involvement of NO signal.12.
Thais Freitas da Silva Renata Estebanez Vollú Joana Montezano Marques Joana Falcão Salles Lucy Seldin 《Plant and Soil》2017,414(1-2):69-79
Background
The fungus Colletotrichum is a plant pathogen that causes the anthracnose disease, resulting in huge losses in various crops including the rose-scented geranium (Pelargonium graveolens). Although the bacterial community associated with plants has an important role in the establishment of plant diseases, little is known about what happens in P. graveolens.Aims
To increase the knowledge about the bacterial community associated with P. graveolens and its relationship with anthracnose disease symptoms.Methods
Quantitative PCR and high-throughput sequencing were combined to determine the presence of the fungus Colletotrichum and to reveal the bacterial communities associated with different plant parts – root, stem and leaf – and in the rhizosphere and bulk soil, and also to determine the respective bacterial communities associated with P. graveolens leaves symptomatic and asymptomatic for anthracnose disease.Results
The fungus Colletotrichum was detected in all plant parts and in the surrounding soil. Bacterial communities varied spatially in plants, and the disease symptoms also influenced the composition of the bacterial community. Abundances of operational taxonomic units (OTUs) assigned to the phylum Actinobacteria and to the genus Streptococcus were greatly increased in asymptomatic leaves.Conclusions
The bacterial community associated to geranium leaves responds to anthracnose symptoms.13.
Benjamin?M.?Delory Caroline?Baudson Yves?Brostaux Guillaume?Lobet Patrick?du?Jardin Lo?c?Pagès Pierre?Delaplace
Background and aims
In order to analyse root system architectures (RSAs) from captured images, a variety of manual (e.g. Data Analysis of Root Tracings, DART), semi-automated and fully automated software packages have been developed. These tools offer complementary approaches to study RSAs and the use of the Root System Markup Language (RSML) to store RSA data makes the comparison of measurements obtained with different (semi-) automated root imaging platforms easier. The throughput of the data analysis process using exported RSA data, however, should benefit greatly from batch analysis in a generic data analysis environment (R software).Methods
We developed an R package (archiDART) with five functions. It computes global RSA traits, root growth rates, root growth directions and trajectories, and lateral root distribution from DART-generated and/or RSML files. It also has specific plotting functions designed to visualise the dynamics of root system growth.Results
The results demonstrated the ability of the package’s functions to compute relevant traits for three contrasted RSAs (Brachypodium distachyon [L.] P. Beauv., Hevea brasiliensis Müll. Arg. and Solanum lycopersicum L.).Conclusions
This work extends the DART software package and other image analysis tools supporting the RSML format, enabling users to easily calculate a number of RSA traits in a generic data analysis environment.14.
Aims
This study investigated how genetic determination of adventitious root development compared in experimental hybrid and parental Salix and Populus clones, and how soil bulk density influenced root development.Methods
Cuttings of 11 Salix clones and 10 Populus clones were grown in pots with water, a low bulk density soil and a high bulk density soil for 4 (water) or 10 weeks (soils). Parameters relating to root development were measured.Results
Root initiation, total root length (RL), and dry mass (DM), as well as root: shoot relationships in Salix clones exceeded that of Populus clones in all media. For Salix clones RL and DM were highest in S. matsudana?×?pentandra and for Populus clones RL and DM were generally higher in hybrid clones having P. trichocarpa parentage. Mean RL and DM for all clones were generally greater in the low bulk density soil than in the high bulk density soil. There were a greater proportion of thinner roots in the low bulk density soil than in the high bulk density soil.Conclusions
There were significant differences in root initiation, RL, and DM among clones within each genus. Increasing soil bulk density significantly reduced root development in both Salix and Populus clones. Evaluating cutting root development in pot trials could be a useful clone selection tool in willow and poplar breeding.15.
Aims
During the first days after harvest of Lolium perenne L., N remobilized from roots and stubble forms the main N source for regrowth. Low N uptake from the soil during this period may lead to N loss if N fertilizer is applied too soon. Furthermore, temporary N deprivation has been found to stimulate root growth. We therefore hypothesized that a strategic delay in N application after harvest may improve N-use efficiency of L. perenne grassland by increasing root biomass and reducing N loss.Methods
In a laboratory and field experiment with L. perenne, we delayed N fertilizer application after harvest for 0, 3, 6, 9 and 12 days, repeated this for up to six harvest cycles, and determined effects on herbage yield, herbage N uptake and root biomass.Results
In both experiments, delaying N application for up to 12 days had no significant effect on root biomass or total herbage N uptake, but it significantly reduced total herbage yield in the laboratory experiment. Total yield tended to be highest when N application was delayed for 3 days. Two growth periods in the field experiment showed significantly higher N uptake when N application was delayed, possibly due to rainfall-induced N losses in the treatments with shorter delay.Conclusions
Our results do not provide evidence that delaying N application improves N-use efficiency of L. perenne grassland by increasing root biomass. However, strategic timing of N fertilizer application based on rainfall forecasts could contribute to improve N-use efficiency by reducing N losses from leaching and denitrification.16.
James F. White Kathryn I. Kingsley Kurt P. Kowalski Ivelisse Irizarry April Micci Marcos A. Soares Marshall S. Bergen 《Plant and Soil》2018,422(1-2):195-208
Background and aims
Non-native Phragmites australis (haplotype M) is an invasive grass that decreases biodiversity and produces dense stands. We hypothesized that seeds of Phragmites carry microbes that improve seedling growth, defend against pathogens and maximize capacity of seedlings to compete with other plants.Methods
We isolated bacteria from seeds of Phragmites, then evaluated representatives for their capacities to become intracellular in root cells, and their effects on: 1.) germination rates and seedling growth, 2.) susceptibility to damping-off disease, and 3.) mortality and growth of competitor plant seedlings (dandelion (Taraxacum officionale F. H. Wigg) and curly dock (Rumex crispus L.)).Results
Ten strains (of 23 total) were identified and characterized; seven were identified as Pseudomonas spp. Strains Sandy LB4 (Pseudomonas fluorescens) and West 9 (Pseudomonas sp.) entered root meristems and became intracellular. These bacteria improved seed germination in Phragmites and increased seedling root branching in Poa annua. They increased plant growth and protected plants from damping off disease. Sandy LB4 increased mortality and reduced growth rates in seedlings of dandelion and curly dock.Conclusions
Phragmites plants associate with endophytes to increase growth and disease resistance, and release bacteria into the soil to create an environment that is favorable to their seedlings and less favorable to competitor plants.17.
M. Victoria Vignale Leopoldo J. Iannone J. Martín Scervino M. Victoria Novas 《Plant and Soil》2018,422(1-2):267-281
Background and aims
We studied, through exudates employment, the effect of Epichloë (endophytic fungi), both independently and in association with Bromus auleticus (grass), on arbuscular mycorrhizal fungi (AMF) colonization, host and neighbouring plants biomass production and soil changes.Methods
Through in vitro and greenhouse experiments, Epichloë endophytes effect on AMF development was evaluated. In vitro studies of exudates effect on Gigaspora rosea and Rhizophagus intraradices were performed using root or endophyte exudates. A 6-month greenhouse experiment was conducted to determine Bromus auleticus endophytic status effect and endophyte exudates role in biomass production, neighbouring plants mycorrhizal colonization and soil properties.Results
Endophyte exudates and E+ plant root exudates promoted in vitro AMF development in the pre-infective stage of G. rosea and in carrot root culture mycelium of R. intraradices in a dose-response relationship, while control media and E- plants exudates had no effect. R. intraradices colonization and plant growth was clearly increased by endophytes and their exudates.Conclusions
This is the first work evidencing the direct effect of Epichloë endophytes and infected plants root exudates on AMF extramatrical development. While higher levels of AMF colonization were observed in E+ plants, no clear effect was detected in neighbouring plants colonization, plant biomass or soil properties.18.
Leaf litter thickness,but not plant species,can affect root detection by ground penetrating radar 总被引:1,自引:0,他引:1
Toko Tanikawa Hidetoshi Ikeno Masako Dannoura Keitarou Yamase Kenji Aono Yasuhiro Hirano 《Plant and Soil》2016,399(1-2):271-282
Aim
Ground penetrating radar (GPR), a nondestructive tool that can detect coarse tree roots, has not yet become a mature technology for use in forests. In this study, we asked two questions concerning this technology: (i) Does the leaf litter layer influence root detection and major indices based on the time interval between zero crossings (T) and the amplitude area (A)? (ii) Can GPR images discriminate roots of different plant species?Methods
Roots buried in a sandy bed, which was covered with different thicknesses of leaf litter, were scanned using a 900 MHz GPR antenna. Roots of four plant species in the bed were also scanned.Results
Leaf litter decreased root reflections without distorting the shape of the hyperbolas in the radar profile. A values decreased with increasing litter thickness, whereas T was independent of litter thickness. For all species combined, GPR indices were significantly correlated with root diameter.Conclusions
Leaf litter dramatically decreased root detection, but the influence of the litter could be ignored when the sum of T for all reflection waveforms (ΣT) is adopted to estimate root diameter. To use A values to detect roots, litter should be removed or equalized in thickness. Radar profiles could not reliably differentiate among roots belonging to plants of different species.19.
Jun Zhou Hongyang Sun Jipeng Wang Qingqing He Haijian Bing Yanhong Wu 《Plant and Soil》2018,425(1-2):1-19
Aims
We examined novel ways of non-destructively measuring root weight, plant growth and water use efficiencies to improve the detection of treatment effects in plant phenotyping in pot culture.Method
Two genotypes each of maize, sunflower and soybean were grown in 4 L ANOVApot®s in the Twinpot Water Management System (TWMS) of a constant water table. Measurement of pot weights and pot water losses (weekly and by drip rate) over time allowed the derivation of plant biomass gain and Water Use Efficiences (WUE). The destructive harvest at 31 days provided weights of plant parts and derived estimates of fresh root weight without physical recovery.Results
Derived estimates of whole plant biomass were highly correlated with harvested whole plant dry weights (r?=?0.97) and fresh shoot weights (r?=?0.99), while estimates of non-recovered fresh root weights were highly correlated with harvested shoot fresh weights (r?=?0.86) and recovered root fresh weights (r?=?0.85). WUEs based on actual water loss and drop counts varied significantly across species and between maize cultivars.Conclusions
Constant water table plant culture in pots allows measures of roots without physical recovery, in situ crop growth and WUEs based on water losses and drip rates.20.
Tianzhen Li Wei Zhou Huiping Bi Yibin Zhuang Tongcun Zhang Tao Liu 《Biotechnology letters》2018,40(7):1057-1065