Give chance a chance

How did I get to become a cell biologist? Or, more generally, why do things happen the way they do? The answer provided by the philosopher Democritus and later adopted by Jacques Monod is “everything existing in the universe is the fruit of chance and necessity.” While I read Monod''s book Chance and Necessity as an undergraduate student, little did I appreciate the accuracy of this citation and how much of my scientific trajectory would be guided by chance.     

Seabird-driven shifts in Arctic pond ecosystems

Migratory animals such as seabirds, salmon and whales can transport large quantities of nutrients across ecosystem boundaries, greatly enriching recipient food webs. As many of these animals biomagnify contaminants, they can also focus pollutants at toxic levels. Seabirds arguably represent the most significant biovectors of nutrients and contaminants from the ocean to the land, given their sheer numbers and global distribution. However, long-term census data on seabirds are rare. Using palaeolimnological proxies, we show that a colony of Arctic seabirds has experienced climate-induced population increases in recent decades. We then document increasing concentrations of contaminants, including polychlorinated biphenyls and cadmium, in pond sediments that are linked to biotransport by seabirds. Our findings suggest that climate-related shifts in global seabird populations will have the unexpected consequence of restructuring coastal ecosystems.     

Nonlogical factors in research: chance and serendipity

Although successful biological research appears to be based on logical inference, on systematic accumulation of information, and on evaluation and hypothesis testing, many nonlogical, unpredictable factors may play an important role or even open new avenues of research. These may include emotional decisions, laboratory accidents, the impact of unanticipated external events, unplanned interactions with other scientists, and relationships with graduate students and postdoctoral fellows. Based on personal experiences, the impact of such nonlogical factors, if exploited fully, can be considerable.     

Primeval procreative comet pond

It is speculated that life originated in a small, shallow body of water containing concentrated prebiotic organic feedstocks, inorganic compounds, and catalytic agents in a diversity of microenvironments. This pond was formed by an improbable, fortuitous soft-landing of a cometary nucleus, or fragment thereof, on the surface of a suitable planet with an atmosphere in an appropriate thermodynamic state, such as Earth.     

Niche versus chance and tree diversity in forest gaps

Studies that are unprecedented in scale, detail or approach show that niche partitioning contributes less, and chance events more, than expected to maintaining tree species richness via gap dynamics in tropical and temperate forests. Some tree species are differentially adapted for regeneration in different gap microenvironments. However, the stochastic availability of gaps, and limited recruitment of juveniles, mean that gaps are filled mostly by chance occupants rather than by best adapted species. This chance survival can slow competitive exclusion and maintain tree diversity. Gap dynamics do not explain the latitudinal gradient in tree richness.     

Structure of a pond community in Central Mexico

The community structure of a tropical pond located in Mexico City was described. Primary producers were diverse and abundant and macrophyte components provide a broad habitat diversity. Major biotic components in the water column were algae of the genera Microcystis, Scenedesmus and Chlamydomonas. Mats of Cyclotella were located in deeper, shaded areas associated with the bottom. Three species of emergent macrophytes characterize the large primary producers. The zooplankton was dominated by protozoa, which were more abundant than rotifers and Crustacea. Dominant invertebrate species of the pond bottom were insect larvae, gastropod mollusks, oligochaete annelids and nematodes. Vertebrates (fish, amphibians, reptiles) feed on this variety of biotic components. A flow diagram depicted the major biological interactions and suggested a complex trophic structure.     

Stoichiometric relationships in vernal pond plankton communities

1. The light-nutrient hypothesis (LNH) predicts that changes in light supply can alter the balance of nutrient and energy limitation in primary producers. We tested this prediction by examining temporal changes in vernal forest ponds, which are highly dynamic systems with respect to seasonal change in light and nutrient supply. In three vernal ponds that differ in productivity, we measured changes in light, total and seston nitrogen and phosphorus, and seston carbon and chlorophyll during the spring, before and after tree leaf-out. We also quantified changes in the population dynamics of the major zooplankton grazers in these systems.
2. In each pond, nutrient levels increased and light levels declined, creating a temporal shift in light-nutrient supply to the plankton. Results generally supported predictions of stoichiometric theory and the LNH, but there were notable exceptions.
3. Seston C : N : P ratios rapidly changed in response to dramatic increases in N and P supply rates. However, seston N : P was typically lower than values for total N : P in the water. Furthermore, as predicted, we observed a decline in seston C : P as the light : nutrient ratio declined, but seston C : N simultaneously increased. These results suggest an unexpected shift towards potential nitrogen limitation. Alternatively, this change in nutrient ratios may be driven by a seasonal change in phytoplankton composition or nutritional mode.
4. Seston carbon concentrations remained stable despite seasonal changes in grazing intensity associated with the phenology of large-bodied Daphnia grazers. However, chlorophyll concentrations declined dramatically as the season progressed, resulting in a simultaneous decline in the C : Chlorophyll ratio of seston. Both pond shading and increased grazing probably contributed to the decline in chlorophyll.     

Community metabolism in a tropical freshwater pond

Summary Apparatus and method to measure the soil biota respiration was described. Daily production rates of a tropical pond community were measured and classified into different types. High production rates of hydrophytes were associated with low amounts of plant biomass both in the field and under experimental conditions on bright and overcast days. Decrease in the production rates on overcast days was 2 to 3 fold up to 353.75 g/m³. Highly turbid pond water was twofold less productive than clear waters. Summer pulse in the production rates was recorded. Plankton as well as soil biota respiratory rates were higher during summer due to higher tropical temperatures. The efficiency ratios of individuals and trophic levels compared favourably with those reported earlier. The high respiration efficiency ratios for herbivores may be due to high temperatures. The input and output of energy of the tropical pond community were measured and the energy flow diagram was constructed. The community metabolism of the tropical pond community was much higher than the communities whose metabolism has been studied else where.Data formed part of Ph. D., thesis and published with the permission of the Syndicate of S. V. University, Tirupati.     

Pattern and chance in the use of the genetic code

Summary The use of triplet code words inE. coli,X174, MS2, and rabbit globin was examined. A significant deficiency of purines in the third position of fourfold degenerate codons was noted, although its significance is not understood. There has been no consistent selection against uracil in pyrimidine restricted codons. For many amino acids the choice between code words appears random, while for arginine, isoleucine, and probably glycine, distinct biases exist which can be explained in terms of tRNA availability.