Population structure of Coilia nasus in the Yangtze River revealed by insertion of short interspersed elements

Coilia nasus is found in the Yangtze River and the coastal waters of China, Korea, and Japan. Two ecotypes (anadromous and freshwater-resident populations) are distributed throughout the Yangtze River basin based on their ecology and behavior, but relatively little is known about the population structure of this species. Analysis of short interspersed element (SINE) insertions, which vary among individuals, has been acknowledged to provide a unique way to study population divergence. SINEs isolated from C. nasus were characterized, and this enabled analysis of the SINE insertion pattern in six populations distributed throughout the Yangtze River basin. In all populations, four SINE loci displayed individual polymorphism, and two SINE loci showed a stochastic loss in all individuals of two resident populations. The correlation between genetic and geographic populations indicated a degree of genetic isolation in this species. In contrast with Coilia grayii and Coilia mystus, two SINE loci appeared only in C. nasus. Sequencing analysis indicated that the high insertion variability of SINEs was attributed mainly to the tails, which contained various repeat copies. The results in this study will be useful for sustainable management of fishery resources and conservation of this species.     

长江口沿岸碎波带仔稚鱼的种类组成及其多样性特征

为了进一步探明长江口沿岸碎波带仔稚鱼的种类组成和多样性特征,2006年7月-2007年6月的每月大潮期间,在长江口沿岸碎波带13个站位点的水深0.5-1.5m处,两人沿海岸平行方向步行拖曳小型拖网(1m×4m,网目1mm)采集仔稚鱼样本。周年共拖网397网次,采集到仔稚鱼49045尾。仔稚鱼隶属于31科,共84种,其中海洋性鱼类16种,河口性鱼类30种,洄游性鱼类4种,淡水性鱼类34种。洄游性鱼类刀鲚占总个体数的82.63%,为最优势种。仔稚鱼的物种数、个体数和丰度在冬季较低,以3月份最低,夏季最高。Margalef丰富度指数2006年11月—2007年4月相对较低,2006年10月最高。Shannon-Wiener多样性指数在10月最高,7月最低。Pielou均匀度指数全年较恒定,2006年7月和2007年6月相对较低。     

Elemental signature in otolith nuclei for stock discrimination of anadromous tapertail anchovy (Coilia nasus) using laser ablation ICPMS

The elemental signature in otolith nuclei was determined using laser ablation inductively coupled plasma mass spectrometry (LA-ICPMS) for stock discrimination of adult anadromous tapertail anchovy, Coilia nasus, in five Chinese estuaries. Five elements (Na, Mg, K, Sr, and Ba) were well detected in the otolith nuclei of the adult fish. Results showed that the elemental composition in the otolith nuclei varied substantially among the estuaries. Age and fish length data showed no significant influences on the elemental concentration ratios across the sample sites. The Sr:Ca and Ba:Ca ratios were inter-site distinct and could be used as natal tags for discriminating among stocks. Discriminant function analyses (DFA) showed that these ratios can be used in discriminating the Liaohe River estuary (LD, 92.3?%), the Yangtze River estuary (CJ, 86.7?%), and the Yellow River estuary (HH, 76.9?%) samples with high classification accuracy, followed by the Haihe River estuary (BH, 58.3?%) and the Daguhe River estuary (JZ, 46.2?%) samples. An overall classification accuracy rate of 72.7?% from the discriminant functions indicated that elemental fingerprinting appeared to have the potential to discriminate between tapertail anchovy stocks in these estuaries.     

The effect of cascaded huge dams on the downstream movement of <Emphasis Type="Italic">Coreius guichenoti</Emphasis> (Sauvage &amp; Dabry de Thiersant, 1874) in the upper Yangtze River

Huge dams (installed capacity > 100 MKW) are generally built on large rivers that display high biodiversity and include major migration routes for many diadromous and potamodromous fish. As a result, these dams lead to severe ecological impacts and receive more attention than smaller dams. Most previous work on the impact of huge dams on fish downstream movement has focused on a single dam and reservoir, so little is known about the effect of cascaded huge dams and reservoirs on downstream movement. During the period 2012–2014, two huge dams (the Xiangjiaba and the Xiluodu) were constructed on the upper Yangtze River and the reservoir impoundments began, respectively in October 2012 and May 2013. These cascaded hydroelectric projects could have a large adverse effect on the downstream movement of an important potamodromous fish species, Coreius guichenoti. To study the effect of cascaded impact of sequential huge dams and reservoirs on passive and active downstream movement of C. guichenoti, eggs and larvae were collected in the Yibin section during 2012–2014 and fish were collected monthly at a site in the Hejiang section from June 2012 to July 2014. Our results showed that, compared to one huge reservoir and dam, cascaded dams exert a more serious effect and obstruct downstream movement of eggs, larvae and young fish (particularly the yearlings and two-year-olds) of C. guichenoti. Individual C. guichenoti were able to pass with relative ease through one reservoir and dam, but passing through both reservoirs and dams was very difficult. To allow access to the spawning grounds upstream, a fish passage should be built on the Xiluodu dam. However, due to the hydropower development in the whole upper basin, captive breeding and maintaining at least 60 km of riverine habitat upstream of a spawning ground could be a more cost-effective approach to maintaining C. guichenoti populations in the Upper Yangtze River.     

Estimation of minimum area requirement of river‐connected lakes for fish diversity conservation in the Yangtze River floodplain

Aim Hydrological disconnection of floodplains from rivers is among the top factors threatening river‐floodplain ecosystems. To keep enough floodplain area is of great importance to biodiversity conservation. In the Yangtze River floodplain, most lakes were disconnected from the mainstream by dams in 1950–1970s. By analysing fish diversity data, we aim at determining the effects of river‐lake disconnection on fish diversity, at estimating the minimum protected area of river‐connected lakes and at proposing a holistic strategy for fish conservation in the mid‐lower reaches of the river. Location The Yangtze River floodplain, China. Methods We collected recorded data of fish diversity of 30 Yangtze floodplain lakes. Species–area relationships were analysed and compared between river‐connected and river‐disconnected lakes. Cumulative species–area models were constructed to estimate the minimum protected area of river‐connected lakes. Results River‐lake disconnection reduced fish diversity of Yangtze lakes by 38.1%, so that the river‐connected lakes play an important role in maintaining the floodplain biodiversity. The minimum protected area of river‐connected lakes was estimated to be 14,400 km². Therefore, we should not only protect the existent connected lakes of 5500 km², but also reconnect disconnected lakes of at least 8900 km² in the Yangtze basin. Main conclusions Species–area relationships are of importance in reserve design. We suggest that cumulative species–area model might be more suitable for ecosystems with high connectivity among regions such as floodplains. As the Yangtze River floodplain is an integrative ecosystem, we suggest establishing a holistic nature reserve in the mid‐lower basin for effective conservation of biodiversity.     

Distinct migratory and non-migratory ecotypes of an endemic New Zealand eleotrid (<Emphasis Type="Italic">Gobiomorphus cotidianus</Emphasis>) – implications for incipient speciation in island freshwater fish species

Background  

Many postglacial lakes contain fish species with distinct ecomorphs. Similar evolutionary scenarios might be acting on evolutionarily young fish communities in lakes of remote islands. One process that drives diversification in island freshwater fish species is the colonization of depauperate freshwater environments by diadromous (migratory) taxa, which secondarily lose their migratory behaviour. The loss of migration limits dispersal and gene flow between distant populations, and, therefore, is expected to facilitate local morphological and genetic differentiation. To date, most studies have focused on interspecific relationships among migratory species and their non-migratory sister taxa. We hypothesize that the loss of migration facilitates intraspecific morphological, behavioural, and genetic differentiation between migratory and non-migratory populations of facultatively diadromous taxa, and, hence, incipient speciation of island freshwater fish species.     

Freshwater fish biodiversity in the Yangtze River basin of China: patterns, threats and conservation

We synthesized information on freshwater fish biodiversity in the Yangtze River basin. We documented 361 species and subspecies that had been recorded and described from the basin. Of these, 177 species are endemic. The basin is usually divided into three parts, i.e. the upper reaches, the middle reaches and the lower reaches. This study indicated that the three reaches approach was not supported by fish distribution patterns. Hydrological alterations are perhaps the largest threat to fish biodiversity in the basin. Fishes in the upper reaches will be seriously affected by the construction of the Three Gorges Dam and other dams, and action should be taken for priority conservation. The most immediate restoration need is reconnection of the Yangtze River with its lakes. The cluster of lakes in the Central Yangtze should be protected to maintain habitats for spawning, feeding and migration of migratory fishes. Our study indicates a need to identify areas of high fish biodiversity and to select nature reserves to mitigate the loss of fish biodiversity in the Yangtze River basin.     

江湖阻隔对长江中下游湖泊鱼类群落分类多样性的影响

基于1950s以来的长江中下游湖泊鱼类调查数据,分析通江湖泊与阻隔湖泊的鱼类分类多样性差异,以及通江和阻隔湖泊鱼类分类多样性的时间序列变化,探讨江湖阻隔对鱼类多样性的影响。结果显示,阻隔湖泊鱼类物种数、平均分类差异指数(Δ⁺)和分类差异变异指数(Λ⁺)平均值分别为48.47±14.64、74.02±3.09和736.89±33.80;通江湖泊为76.22±14.40、78.31±0.98和697.31±25.53。阻隔湖泊物种数和Δ⁺值显著低于通江湖泊(P<0.001),而阻隔湖泊Λ⁺值显著高于通江湖泊(P=0.002),表明阻隔湖泊物种间亲缘关系更近,均匀度下降,即物种分类单元减少,且集中分布于某几个分类阶元,稳定性变差。典型通江与阻隔湖泊鱼类群落分类多样性的时间变化分析发现,两种类型湖泊的鱼类物种数和Δ⁺值均随时间推移整体呈现下降趋势,Λ⁺值整体呈现升高趋势;并且阻隔湖泊的Λ+值随阻隔时间增加而大幅上升,Δ⁺和Λ^+...     

Potential re-establishment of diadromous fish species in the River Scheldt (Belgium)

This study (2002) documents on the inland penetration off diadromous fish species into the tidal and non-tidal part of the River Scheldt and on the impact of two lock-weir complexes. Long-term trends in oxic conditions show the river is undergoing a natural recovery process, nevertheless five of ten diadromous species recorded were still restricted to the brackish part of the estuary. Despite poor conditions, five species reached the upper freshwater part of the estuary. Erratic free-flowing conditions at the tidal weir offered limited opportunities for some diadromous species to migrate into the non-tidal part of the river. Upstream migration over the second barrier is almost completely blocked. Rehabilitation schemes to restore self-sustaining populations of diadromous fish in the cross-border River Scheldt need to include the building of fish bypasses and improved wastewater treatment and habitat restoration programmes. Guest editors: S. Dufour, E. Prévost, E. Rochard & P. Williot Fish and diadromy in Europe (ecology, management, conservation)     

长江中下游不同地理种群鳜遗传结构研究

以长江、通江湖泊(洞庭湖、鄱阳湖)、陆封型湖泊(牛山湖、涨度湖、汤逊湖、肖四海湖)不同水体鳜为研究材料,利用微卫星遗传标记对其种群遗传结构进行分析,结果表明:由期望杂合度(He)和多态信息含量指数(PIC)检测的遗传多样性由大到小的顺序为:长江、通江湖泊群体>无放流陆封型湖泊群体>放流的陆封型湖泊群体,并且发现一些稀有等位基因位点在陆封型湖泊鳜群体中消失;由杂合度检验可以看出,所有群体在绝大多数位点都呈现杂合过剩现象,经过哈代-温伯格平衡检验,显示均显著偏离哈代-温伯格平衡(Pst为0.2727,显示群体间已发生较大遗传分化,其变异主要体现在通江湖泊和陆封型湖泊之间,同时由于陆封型湖泊之间放流管理模式的不同,亦会产生中度分化。研究结果表明,江湖阻隔是造成定居性鱼类鳜种群间遗传分化的重要原因之一。       

Three ecological factors influencing riverine fish diversity in the Shubuto River system,Japan: habitat capacity,habitat heterogeneity and immigration

A major goal of stream ecology is to identify environmental gradients that shape riverine communities. We examined the relative importance of three ecological factors that have been hypothesized to influence a longitudinal pattern of fish diversity: habitat capacity, heterogeneity and immigration of diadromous fishes. Field surveys were carried out in the entire network of the Shubuto River system, Hokkaido, Japan. A hierarchical partitioning approach revealed that distance from the sea, a proxy for immigration potential of diadromous fishes, had the greatest explanatory capacity, by which 24.9 % of variation in fish species richness was explained. Habitat capacity (approximated by catchment area) was also identified as a significant predictor of fish diversity, whereas habitat heterogeneity brought little improvement to the model performance. These results reflect the fish fauna of the Shubuto River system, in which diadromous fishes are dominant in both abundance and species richness.     

Mitochondrial and nuclear genetic structure in <Emphasis Type="Italic">Rhodeus ocellatus</Emphasis> (Teleostei: Cyprinidae) with approximate Bayesian computation

The rosy bitterling, Rhodeus ocellatus, is a small freshwater fish belonging to the family Cyprinidae. This species lives in ponds where freshwater mussels are abundant and female lays eggs inside mussels. To understand whether the reproduction mode influenced the phylogeography, our study examined the genetic structure of R. ocellatus using sequences from the mitochondrial DNA (cytochrome b gene and control region) and nuclear DNA (the first intron of ribosomal protein S7 gene). In total, 213 specimens were collected from twelve populations in south of Yangtze River, including Yangtze River, Taiwan and Hainan Islands. The phylogenetic analyses based on mitochondrial and nuclear sequences both showed the lack of a population genetic structure, but all results, including the approximate Bayesian computation approaches, showed that these two markers revealed incongruent historical signals. Our study found that (1) the discordance between these two markers were accounted for admixtures by introduced; (2) the phylogeographic pattern of R. ocellatus and that of other freshwater fish were identical; (3) the reproduction mode was due to that the gene flows among populations were limited; and (4) R. ocellatus colonized in south of the Yangtze River (including) after southeast coastal districts formed and before Taiwan Island reached its present shape by comparing our results with that of the previous studies.     

Microsatellite diversity and population genetic structure of redfin culter ( Culter erythropterus ) in fragmented lakes of the Yangtze River

Redfin culter (Culter erythropterus) is a small lethic freshwater fish and widely distributed in the adjacent lakes of the Yangtze River of China. Five microsatellite loci were applied to investigate the genetic variation and population structure of redfin culter from seven lakes in the middle-and-lower reaches of the Yangtze River. The gene diversity was high among the populations (H > 0.9), the average number of alleles among seven populations was low with a range from 2.00 to 3.87. The mean observed (H _O) and expected (H _E) heterozygosity ranged from 0.111 to 0.419 and from 0.162 to 0.750, respectively. Significant deviations from Hardy-Weinberg Equilibrium expectation were found in 50% of the total locus-population combination tests in which heterozygote deficits were apparent. The analysis of molecular variance (AMOVA) indicated that the percentage of variance among and within these populations were 6.18 and 93.82, respectively. The Fst values (0.062, P < 0.001) among studied populations indicated that there were significant genetic differentiations among redfin culture populations from the scattered lakes with different connections to the Yangtze River. These results are useful for the evaluation and conservation of small freshwater fishes. The factors that may be involved in low intra-population polymorphism and the pattern of the population genetic structure of redfin culter from the Yangtze River were discussed. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: C. Sturmbauer     

长江中游宜昌江段鱼类早期资源现状及水文影响条件

为了解长江中游鱼类的早期资源现状, 2017年和2018年5—7月在长江干流宜都断面开展鱼类早期资源调查, 采样网具包括弶网和圆锥网。调查期间共采集鱼卵21120粒和仔鱼2123尾。利用形态学和分子生物学等方法, 鉴定鱼类5目9科37种。其中, 鱼卵有29种, 仔鱼有27种。2017年和2018年通过宜都断面的鱼卵径流量分别为124.45×108粒和101.07×108粒, 优势种为四大家鱼和贝氏?(Hemiculter bleekeri); 仔鱼径流量分别为16.43×108尾和8.29×108尾, 优势种为贝氏?和寡鳞飘鱼(Pseudolanbuca engraulis)。根据发育期和流速分析, 四大家鱼鱼卵来源于三峡大坝下游至宜都断面之间的产卵场, 仔鱼来源于三峡大坝以上的产卵场。与2009—2010年相比, 2017—2018年通过宜都断面的鱼卵径流量增大了85.3%, 尤其是四大家鱼的鱼卵径流量与2005—2012年相比增加了约13倍。冗余分析(Redundancy Analysis, RDA)结果显示, 流量和流量日变化对产漂流性鱼卵密度有影响。研究结果表明, 2017—2018年仍有大量的鱼卵和仔鱼补充到长江中游江段。与历史数据相比, 三峡大坝下游宜昌江段鱼类产卵规模有明显的增加, 可能与长江中游四大家鱼亲鱼增殖放流和生态调度等保护措施的实施有关。为了更加有效地保护长江中游的鱼类资源, 建议除了已经逐步实施的长江全面禁渔措施之外, 还应恢复江湖连通, 保护和修复长江中游河漫滩生境, 继续开展重要经济鱼类亲本放流, 以及开展生态调度。     

Patterns of Fish Growth along a Residential Development Gradient in North Temperate Lakes

Residential development of lakeshores is expected to change a variety of key lake features that include increased nutrient loading, increased invasion rate of nonnative species, increased exploitation rates of fishes by anglers, and alteration of littoral habitats. All of these factors may alter the capacity of lakes to support productive native fish populations. Fourteen north temperate lakes were surveyed to examine how growth rates of two common fish species (bluegill sunfish, Lepomis macrochirus; largemouth bass, Micropterus salmoides) varied along a residential development gradient. Size-specific growth rates for both species were negatively correlated with the degree of lakeshore residential development, although this trend was not statistically significant for largemouth bass. On average, annual growth rates for bluegill sunfish were 2.6 times lower in heavily developed lakes than in undeveloped lakes. This effect of lakeshore development on fish growth was not size specific for bluegills between 60 and 140 mm in total length. An index of population production rate that accounted for both the size-specific growth rate and the size distribution of fishes showed that bluegill populations were approximately 2.3 times less productive in highly developed lakes than in undeveloped lakes. Our results suggest that extensive residential development of lakeshores may reduce the fish production capacity of aquatic ecosystems. Received 29 April 1999; Accepted 26 October 1999.     

Sequential fishways reconnect a coastal river reflecting restored migratory pathways for an entire fish community

River regulation infrastructure has been implicated in worldwide aquatic biodiversity loss. In‐stream barriers such as weirs prevent fish migration and the impact can be particularly severe for diadromous species. Fishways are frequently installed on in‐stream barriers to reconnect migratory pathways and rehabilitate diadromous fish populations. Sequential fishways may be necessary in rivers where multiple barriers prevent migration. We monitored a coastal fish community's response to fish passage restoration at 10 predominantly low‐level weirs in the freshwater reaches of the Nepean River in southeastern Australia. Few studies have simultaneously assessed fish community passage at successive fishways within a river system. Prior to the installation of the fishways, there was a gradient of reduced species diversity in an upstream direction including the absence of many diadromous species, despite the regular inundation frequency of most weirs. Following the installation of the fishways, species diversity was still greater in the downstream monitoring sites; however, there was evidence of a positive change in fish community structure in middle and upstream sites. Most notably, three diadromous species rapidly expanded their distribution upstream and one amphidromous species expanded its downstream distribution. This study demonstrates appropriately designed successive fishways can successfully reconnect river systems for an entire fish community, encompassing species with a broad range of swimming abilities and diverse life histories.     

Low population differentiation revealed in the highly threatened elongate loach (Leptobotia elongata,Bleeker), a species endemic to the fragmented upper reaches of the Yangtze River

The elongate loach (Leptobotia elongata) is a typical migratory fish that was formerly found in abundance throughout the upper and middle reaches of the Yangtze River but is now classified as a highly threatened fish on the China Species Red List. Here, a comparative study of microsatellite loci was performed to evaluate the genetic diversity and analyze the population structure in seven locations in the upper reaches of the Yangtze River, China. The results showed that genetic diversity of L. elongata is generally still at a high level. Populations from Xinshi, Panzhihua, Hechuan and Chishui, were found to have lower levels of genetic diversity than those that lived in Leshan, Yibin and Jiangjin. The IAM model indicated that populations from Panzhihua, Xinshi and Hechuan have undergone recent bottlenecks. AMOVA analysis revealed a small amount of differentiation among populations (3.6%), but most of the total variation occurred within populations (96.4%). Pairwise comparisons of populations confirmed a low population differentiation. STRUCTURE analysis showed no obvious genetic structure among populations, indicating that L. elongata living in the main stem of the river and its tributaries should be considered a single management unit.     

High predation is of key importance for dominance of small-bodied zooplankton in warm shallow lakes: evidence from lakes, fish exclosures and surface sediments

The mean body size of limnetic cladocerans decreases from cold temperate to tropical regions, in both the northern and the southern hemisphere. This size shift has been attributed to both direct (e.g. physiological) or indirect (especially increased predation) impacts. To provide further information on the role of predation, we compiled results from several studies of subtropical Uruguayan lakes using three different approaches: (i) field observations from two lakes with contrasting fish abundance, Lakes Rivera and Rodó, (ii) fish exclusion experiments conducted in in-lake mesocosms in three lakes, and (iii) analyses of the Daphnia egg bank in the surface sediment of eighteen lakes. When fish predation pressure was low due to fish kills in Lake Rivera, large-bodied Daphnia appeared. In contrast, small-sized cladocerans were abundant in Lake Rodó, which exhibited a typical high abundance of fish. Likewise, relatively large cladocerans (e.g. Daphnia and Simocephalus) appeared in fishless mesocosms after only 2 weeks, most likely hatched from resting egg banks stored in the surface sediment, but their abundance declined again after fish stocking. Moreover, field studies showed that 9 out of 18 Uruguayan shallow lakes had resting eggs of Daphnia in their surface sediment despite that this genus was only recorded in three of the lakes in summer water samples, indicating that Daphnia might be able to build up populations at low risk of predation. Our results show that medium and large-sized zooplankton can occur in subtropical lakes when fish predation is removed. The evidence provided here collectively confirms the hypothesis that predation, rather than high-temperature induced physiological constraints, is the key factor determining the dominance of small-sized zooplankton in warm lakes.