喜树碱的生物合成途径和代谢调控

喜树碱是一种具有抗肿瘤活性的萜类吲哚生物碱,最早是从我国特有植物喜树中分离获得的。本文概述喜树碱的天然分布合成途径和代谢调控的研究进展,并对喜树碱未来的生产和发展研究作了展望。     

甜菜素的生物合成及其代谢调控进展

甜菜素是一种植物源的水溶性天然含氮色素,用于食品添加剂和化妆品等行业中。在植物中甜菜素和花青素色素互不共存,其代谢途径是重要的植物化学分类指标。甜菜素兼具抗氧化、抗肿瘤、抗疟、保肝等药理作用,其潜在的医疗保健价值以及其代谢途径的独特性,促进了对甜菜素深入研究。综述了甜菜素合成途径中的关键酶和合成生物学策略生产甜菜素的国内外研究进展,为建立合成生物方法生产甜菜素提供参考。     

Isoaccepting Transfer Ribonucleic Acids during Chilling Stress in Soybean Seedling Hypocotyls

Total aminoacylation of glycine and leucine transfer RNAs was compared between chilled and nonchilled hypocotyls of 7-day-old soybean seedlings. Total charging was greater for both specific transfer RNAs from nonchilled sources. Isoaccepting transfer RNA species for glycine and leucine were fractionated using reverse phase column chromatography. Leucyltransfer RNAs were fractionated into six distinct fractions with relatively small shifts appearing in specific fractions between chilled and nonchilled sources. Glycyl-transfer RNAs were fractionated into two distinct fractions with major shifts appearing for both fractions between chilled and nonchilled sources.     

大豆异黄酮生物合成关键酶及其代谢工程研究进展

异黄酮是一类具有C-6/C-3/C-6骨架的二次代谢产物,具有抗氧化和抗肿瘤活性。异黄酮与黄酮类物质具有相似的苯丙烷生物合成途径。天然的绝大部分异黄酮分布在豆科植物中,目前在大豆中已经发现了超过12个异黄酮(苷)。大豆异黄酮的生物合成主要涉及三个关键的酶查尔酮合酶(CHS)、查尔酮异构酶(CHI)和异黄酮合酶(IFS)。总结了大豆异黄酮的提取分离方法和生物合成途径,着重综述了CHI、CHS、IFS生物学特征和功能及异黄酮的代谢工程研究。     

阿维拉霉素生物合成与代谢调控研究进展

阿维拉霉素是发酵法来源的新型兽用的消化促进剂和代谢调节剂,具有较高的生物安全性,通过改善动物肠道内细菌群的生态结构促进动物生长。对阿维拉霉素的生物合成和代谢调控进行了综述,同时结合系统生物技术观点,为阿维拉霉素菌种基因工程改造提供参考。     

植物花青素合成代谢途径及其分子调控

植物花青素是一种天然食用色素,具有安全、无毒的特点,具有预防心脑血管疾病、保护肝脏与抗癌等多种重要的营养和药理功能。因此,花青素在食品、医药保健、园艺和作物改良等方面均具有重要研究价值和应用潜力。该文综述了植物花青素合成代谢途径及其分子调控研究进展,概述了植物花青素的生物合成、代谢以及积累过程,重点介绍了影响植物花青素代谢的结构基因和调控基因及其作用机制,同时展望了花青素合成代谢相关基因的研究应用前景和发展趋势。     

Changes in the Coagulating Ability of Pectin during the Growth of Soybean Hypocotyls

The hypocotyl of a 3-day-old dark-grown soybean seedling wascut into the hook segment and seven 5-mm segments of the straightportion. Wall fractions, prepared from the segments, were boiledin 0.2 M NaCl solution to extract pectin. The lower the tissuewas located, the less pectin was found in the neutral residuesand the stronger was the tendency to coagulate in the presenceof pectin methylesterase and Ca²⁺. Chromatography on a columnof Sepharose 2B gave two subfractions each of polyuronide; theone with the higher mol wt was termed A pectin and the other,B pectin. The lower the tissue, the lower was the ratio of Apectin/B pectin. B pectin coagulated in the presence of pectinmethylesterase and Ca²⁺ whereas A pectin did not. The coagulationof B pectin was strongly inhibited by A pectin obtained fromthe upper region (the hook and upper 1 cm of the straight portion)of the hypocotyl. The possible role of the pectin change in controlling cell growthis discussed. (Received January 31, 1983; Accepted August 4, 1983)     

植物芪类合成途径相关酶、基因和调控机制研究进展

植物芪类化合物,是一类具有抗菌植保作用的次生代谢产物,因具有抑菌、抗氧化、抗肿瘤等多种生物活性而越来越受到重视。本文对植物芪类生物合成途径中涉及到的相关酶、基因和代谢调控机制的研究现状和应用系统生物学研究芪类生物合成途径的相关酶、基因的方法进行综述,并讨论了芪类生物合成相关酶、基因研究的重要意义和应用,以期为调节芪类产量、满足药用保健需求及植物防御、作物品质改良提供帮助。     

Regulation of Ethylene Biosynthesis in Avocado Fruit during Ripening

Preclimacteric avocado (Persea americana Mill.) fruits produced very little ethylene and had only a trace amount of l-aminocyclopropane-1-carboxylic acid (ACC) and a very low activity of ACC synthase. In contrast, a significant amount of l-(malonylamino)cyclopropane-1-carboxylic acid (MACC) was detected during the preclimacteric stage. In harvested fruits, both ACC synthase activity and the level of ACC increased markedly during the climacteric rise reaching a peak shortly before the climacteric peak. The level of MACC also increased at the climacteric stage. Cycloheximide and cordycepin inhibited the synthesis of ACC synthase in discs excised from preclimacteric fruits. A low but measurable ethylene forming enzyme (EFE) activity was detected during the preclimacteric stage. During ripening, EFE activity increased only at the beginning of the climacteric rise. ACC synthase and EFE activities and the ACC level declined rapidly after the climacteric peak. Application of ACC to attached or detached fruits resulted in increased ethylene production and ripening of the fruits. Exogenous ethylene stimulated EFE activity in intact fruits prior to the increase in ethylene production. The data suggest that conversion of S-adenosylmethionine to ACC is the major factor limiting ethylene production during the preclimacteric stage. ACC synthase is first synthesized during ripening and this leads to the production of ethylene which in turn induces an additional increase in ACC synthase activity. Only when ethylene reaches a certain level does it induce increased EFE activity.     

林肯链霉菌合成林可霉素代谢调节的研究

在摇瓶条件下研究了葡萄糖、铵盐、磷酸盐对林可霉素产生菌林肯链霉菌的生长及林可霉素生物合成的影响。发酵过程中林可霉素的合成主要发生在菌体生长期,逐渐下降。使用6%的葡萄糖未发现通常所说的“葡萄糖效应”。0.2%铵盐有利于细胞生长,但0.8%NH+4对林可霉素的生物合成具有抑制作用。发酵48h后补加0.6% NH^＋_４,对林可霉素的生成没有显著影响。0.05%～0.1%磷酸盐对林可霉素合成具有较强的抑制作用。并就磷酸盐对菌体由初级代谢转向次级代谢的作用作了初步考察。     

Functional Analysis of Metabolic Channeling and Regulation in Lignin Biosynthesis: A Computational Approach

Lignin is a polymer in secondary cell walls of plants that is known to have negative impacts on forage digestibility, pulping efficiency, and sugar release from cellulosic biomass. While targeted modifications of different lignin biosynthetic enzymes have permitted the generation of transgenic plants with desirable traits, such as improved digestibility or reduced recalcitrance to saccharification, some of the engineered plants exhibit monomer compositions that are clearly at odds with the expected outcomes when the biosynthetic pathway is perturbed. In Medicago, such discrepancies were partly reconciled by the recent finding that certain biosynthetic enzymes may be spatially organized into two independent channels for the synthesis of guaiacyl (G) and syringyl (S) lignin monomers. Nevertheless, the mechanistic details, as well as the biological function of these interactions, remain unclear. To decipher the working principles of this and similar control mechanisms, we propose and employ here a novel computational approach that permits an expedient and exhaustive assessment of hundreds of minimal designs that could arise in vivo. Interestingly, this comparative analysis not only helps distinguish two most parsimonious mechanisms of crosstalk between the two channels by formulating a targeted and readily testable hypothesis, but also suggests that the G lignin-specific channel is more important for proper functioning than the S lignin-specific channel. While the proposed strategy of analysis in this article is tightly focused on lignin synthesis, it is likely to be of similar utility in extracting unbiased information in a variety of situations, where the spatial organization of molecular components is critical for coordinating the flow of cellular information, and where initially various control designs seem equally valid.     

Molecular Cloning and Characterization of a cDNA for Pterocarpan 4-Dimethylallyltransferase Catalyzing the Key Prenylation Step in the Biosynthesis of Glyceollin,a Soybean Phytoalexin

Glyceollins are soybean (Glycine max) phytoalexins possessing pterocarpanoid skeletons with cyclic ether decoration originating from a C₅ prenyl moiety. Enzymes involved in glyceollin biosynthesis have been thoroughly characterized during the early era of modern plant biochemistry, and many genes encoding enzymes of isoflavonoid biosynthesis have been cloned, but some genes for later biosynthetic steps are still unidentified. In particular, the prenyltransferase responsible for the addition of the dimethylallyl chain to pterocarpan has drawn a large amount of attention from many researchers due to the crucial coupling process of the polyphenol core and isoprenoid moiety. This study narrowed down the candidate genes to three soybean expressed sequence tag sequences homologous to genes encoding homogentisate phytyltransferase of the tocopherol biosynthetic pathway and identified among them a cDNA encoding dimethylallyl diphosphate: (6aS, 11aS)-3,9,6a-trihydroxypterocarpan [(−)-glycinol] 4-dimethylallyltransferase (G4DT) yielding the direct precursor of glyceollin I. The full-length cDNA encoding a protein led by a plastid targeting signal sequence was isolated from young soybean seedlings, and the catalytic function of the gene product was verified using recombinant yeast microsomes. Expression of the G4DT gene was strongly up-regulated in 5 to 24 h after elicitation of phytoalexin biosynthesis in cultured soybean cells similarly to genes associated with isoflavonoid pathway. The prenyl part of glyceollin I was demonstrated to originate from the methylerythritol pathway by a tracer experiment using [1-¹³C]Glc and nuclear magnetic resonance measurement, which coincided with the presumed plastid localization of G4DT. The first identification of a pterocarpan-specific prenyltransferase provides new insights into plant secondary metabolism and in particular those reactions involved in the disease resistance mechanism of soybean as the penultimate gene of glyceollin biosynthesis.Typical phytoalexins of the Leguminosae are isoflavonoid derivatives with characteristic species-specific modifications in both their skeletons and their decoration, e.g. prenylation (Dixon, 1999). Isoflavonoids are formed through an early branching pathway in flavonoid metabolism. The most abundantly found isoflavonoid skeleton of leguminous phytoalexins is pterocarpan, and more than one-half of these pterocarpanoids are decorated in a complex manner mainly by isoprenoid-derived substituents (Tahara and Ibrahim, 1995). Glyceollin is the collective name for soybean (Glycine max) phytoalexins with pterocarpanoid skeletons and cyclic ether decoration originating from C₅ prenyl substitutions (Fig. 1). The biosynthesis mechanism of soybean phytoalexins has been studied extensively during the 1970s to 1990s, most actively by Grisebach et al. (Ebel and Grisebach, 1988), and the pathway and biosynthetic enzymes involved have been characterized intensively at the biochemical level (Ebel, 1986; Dixon, 1999). More recent studies with leguminous plants such as alfalfa (Medicago sativa), licorice (Glycyrrhiza echinata), Lotus japonicus, and Medicago truncatula in addition to soybean have resulted in the identification of many genes encoding enzymes involved in isoflavonoid formation (Dixon, 1999; Shimada et al., 2007; Veitch, 2007). However, some genes encoding enzymes of the later stages of glyceollin biosynthesis, especially the crucial prenylation step, have remained uncharacterized until now.Open in a separate windowFigure 1.Biosynthesis of glyceollin isomers in soybean. Abbreviations not defined in the text: HID, 2-hydroxyisoflavanone dehydratase; IFS, 2-hydroxyisoflavanone synthase; P6aH, pterocarpan 6a-hydroxylase; G2DT, dimethylallyl diphosphate: (−)-glycinol 2-dimethylallyltransferase.During glyceollin biosynthesis, a dimethylallyl group is introduced at either C-4 or C-2 of the pterocarpan skeleton (C-8 or C-6 by isoflavone numbering, respectively). A prenyltransferase activity catalyzing the dimethylallylation of (6aS, 11aS)-3,9,6a-trihydroxypterocarpan, (−)-glycinol, has been demonstrated in microsomal fractions of soybean cotyledons and cell cultures treated with a glucan elicitor derived from the cell walls of Phytophthora sojae (Zähringer et al., 1979). An increased toxicity of the prenylated pterocarpans against a phytopathogenic fungus was also demonstrated (Zähringer et al., 1981). An important finding was that the prenylation activity was localized to the chloroplast fraction of cotyledon cells in contrast to the endoplasmic reticulum (ER) where many of the cytochrome P450s (P450s) for glyceollin formation are localized (Welle and Grisebach, 1988; Biggs et al., 1990; Ayabe and Akashi, 2006). Efficient solubilization of the activity and partial purification of the enzyme have also been reported (Welle and Grisebach, 1991), but no complete purification was achieved to sequence the amino acids, and thus the gene responsible remains unidentified.Recently, plant cDNAs of aromatic substrate prenyltransferases have been characterized, and their nucleotide sequence information has become available (Yazaki et al., 2002; Sasaki et al., 2008). In view of the potential benefits of understanding the molecular mechanism underlying the phytopathogen resistance of soybean for the future disease-resistance breeding, studies toward the complete identification of the enzymes involved in glyceollin biosynthesis are important. Thus, this study undertook the molecular cloning and biochemical characterization of a soybean prenyltransferase involved in the glyceollin biosynthetic pathway.     

Evidence that Auxin-induced Growth of Soybean Hypocotyls Involves Proton Excretion

The role of H⁺ excretion in auxin-induced growth of soybean hypocotyl tissues has been investigated, using tissues whose cuticle was rendered permeable to protons or buffers by scarification (scrubbing). Indoleacetic acid induces both elongation and H⁺ excretion after a lag of 10 to 12 minutes. Cycloheximide inhibits growth and causes the tissues to remove protons from the medium. Neutral buffers (pH 7.0) inhibit auxin-induced growth of scrubbed but not intact sections; the inhibition increases as the buffer strength is increased. Both live and frozen-thawed sections, in the absence of auxin, extend in response to exogenously supplied protons. Fusicoccin induces both elongation and H⁺ excretion at rates greater than does auxin. These results indicate that H⁺ excretion is involved in the initiation of auxin-induced elongation in soybean hypocotyl tissue.     

Differential Expression of ADC mRNA during Development and upon Acid Stress in Soybean (Glycine max) Hypocotyls

Arginine decarboxylase (ADC) is one of the key enzymes in thebiosynthesis of putrescine in plants. The regulation of itsactivity depends on the physiological condition, developmentalstage, and type of tissue. We have cloned ADC cDNA from soybean(Glycine max) hypocotyls to understand the regulation mechanismsof this enzyme activity. Using the cDNA clone, we examined therelationship between changes in the ADC activity and the levelof ADC mRNA during development, in different tissues, and uponacid stress. The ADC activity began to increase 2 d after initiationof germination, reached a peak at the 5th d, and then declined.This change in the enzyme activity was preceded by similar changesin the level of the mRNA. The ADC activity was expressed tissue-specifically;this expression was well corelated with the mRNA content ofthe respective tissues. Incubation of the 5-d-old hypocotylsin pH 3 potassium phosphate solution caused a rapid increasein ADC activity. Within 2 h of acid treatment, the ADC activityincreased more than threefold. This increase was also precededby a corresponding increase in the mRNA content and was alsoregulated tissue-specifically. These results suggest that thechange in the content of ADC mRNA has an important role in theregulation of the enzyme activity during early development,in different tissues, and upon acid stress. (Received April 2, 1997; Accepted August 18, 1997)     

Phosphorylation-Dependent Regulation of G-Protein Cycle during Nodule Formation in Soybean

Signaling pathways mediated by heterotrimeric G-protein complexes comprising Gα, Gβ, and Gγ subunits and their regulatory RGS (Regulator of G-protein Signaling) protein are conserved in all eukaryotes. We have shown that the specific Gβ and Gγ proteins of a soybean (Glycine max) heterotrimeric G-protein complex are involved in regulation of nodulation. We now demonstrate the role of Nod factor receptor 1 (NFR1)-mediated phosphorylation in regulation of the G-protein cycle during nodulation in soybean. We also show that during nodulation, the G-protein cycle is regulated by the activity of RGS proteins. Lower or higher expression of RGS proteins results in fewer or more nodules, respectively. NFR1 interacts with RGS proteins and phosphorylates them. Analysis of phosphorylated RGS protein identifies specific amino acids that, when phosphorylated, result in significantly higher GTPase accelerating activity. These data point to phosphorylation-based regulation of G-protein signaling during nodule development. We propose that active NFR1 receptors phosphorylate and activate RGS proteins, which help maintain the Gα proteins in their inactive, trimeric conformation, resulting in successful nodule development. Alternatively, RGS proteins might also have a direct role in regulating nodulation because overexpression of their phospho-mimic version leads to partial restoration of nodule formation in nod49 mutants.     

Association of Phytochrome with Rough-surfaced Endoplasmic Reticulum Fractions from Soybean Hypocotyls

Distribution of phytochrome (as Pfr) among membranes from soybean hypocotyls (Glycine max L. cv. Wayne) was determined by the combined techniques of cell fractionation, difference spectrometry, and electron microscopic morphometry. More than 90% of the phytochrome was found in the soluble fraction. With homogenates prepared in the presence or absence of Mg²⁺, the portion associated with membrane was only 6.5% and 1%, respectively. In the presence of Mg²⁺, the content of particulate phytochrome correlated with the amount of endoplasmic reticulum with attached ribosomes in the fractions but not with mitochondria or other membranes (including endoplasmic reticulum membranes from which the ribosomes may have been lost during cell fractionation). In the absence of Mg²⁺, phytochrome was associated with a “heavy” plasma membrane fraction. The phytochrome content was sufficiently low to be accounted for by a contamination of less than 10% by rough-surfaced fragments of endoplasmic reticulum. The findings show association of phytochrome with a particulate fraction enriched in rough-surfaced fragments of endoplasmic reticulum but do not rule out cosedimentation of some unknown or unspecific phytochrome aggregate with this fraction.     

Production of the Phytoalexin Glyceollin I by Soybean Roots in Response to Symbiotic and Pathogenic Infection

The amount of the phytoalexin glyceollin I in root exudate and root hairs of individual seedlings of Glycine max (L. Merr. cv. Preston) was analysed using a radioimmunoassay. Bradyrhizobium japonicum 110spc4, which is able to form nitrogen fixing nodules with this plant, caused an increase of up to 50-fold in glyceollin I levels in root exudate relative to uninfected control seedlings. Maximum glyceollin I levels were reached within 10 h of incubation. Elevated glyceollin I levels were also observed after incubation of soybean roots in sterile bacterial supernatant, a suspension of autoclaved bacteria or the supernatant from broken cells of Bradyrhizobium japonicum. Increased glyceollin I production is not due to the process of active root hair penetration by the microsymbiont since living bacterial cells are not necessary for the induction. The observed glyceollin I production in response to Bradyrhizobium japonicum is several times lower than that after pathogenic infection. Infection with zoospores of the phytopathogenic oomycete, Phytophthora megasperma f. sp. glycinea race 1, leads within 20 h to an accumulation of 7 nmol glyceollin I/seedling in the root exudate of the compatible cultivar Kenwood and 48 nmol glyceollin I/seedlings in that of the incompatible cultivar Maple Arrow. These results support the idea that phytoalexins are implicated in determination of compatibility in pathogenic interactions. Crude cell extracts of different symbiotic bacteria (Bradyrhizobium japonicum 110spc4, Rhizobium meliloti 2011, Rhizobium leguminosarum PRE 8, Sinorhizobium fredii HH 103) were found to induce different amounts of glyceollin I in the root exudate. The observed glyceollin I levels could not be correlated with the ability of these rhizobial strains to nodulate Glycine max. Inhibition of flavonoid and phytoalexin synthesis by (R)-(1-amino-2-phenylethyl)phosphonic acid (APEP), a specific inhibitor of the phenylalanine-ammonia-lyase (PAL), during the first 20 h of the symbiotic interaction dramatically decreased the number of nodules formed in root regions that had been in contact with the inhibitor. This effect was observed at concentrations that inhibited neither bacterial nor plant growth. The implications of these findings for the process of nodule initation are discussed.     

Metabolic Engineering of Terpenoid Biosynthesis in Plants

Metabolic engineering of terpenoids in plants is a fascinating research topic from two main perspectives. On the one hand, the various biological activities of these compounds make their engineering a new tool for improving a considerable number of traits in crops. These include for example enhanced disease resistance, weed control by producing allelopathic compounds, better pest management, production of medicinal compounds, increased value of ornamentals and fruit and improved pollination. On the other hand, the same plants altered in the profile of terpenoids and their precursor pools make a most important contribution to fundamental studies on terpenoid biosynthesis and its regulation. In this review we describe our recent results with terpenoid engineering, focusing on two terpenoid classes the monoterpenoids and sesquiterpenoids. The emerging picture is that engineering of these compounds and their derivatives in plant cells is feasible, although with some requirements and limitations. For example, in terpenoid engineering experiments crucial factors are the subcellular localisation of both the precursor pool and the introduced enzymes, the activity of endogenous plant enzymes which modify the introduced terpenoid skeleton, the costs of engineering in terms of effects on other pathways sharing the same precursor pool and the phytotoxicity of the introduced terpenoids. Finally, we will show that transgenic plants altered in their terpenoid profile exert novel biological activities on their environment, for example influencing insect behaviour.A. Aharoni is an Incumbent of the Adolfo and Evelyn Blum Career Development chair