Revision of the Genus Protostelium (Eumycetozoa) I: The Protostelium mycophaga Group and the P. irregularis Group

ABSTRACT The most commonly encountered protostelids are nominal members of the genus Protostelium Olive & Stoianovitch. These are Protostelium mycophaga Olive & Stoianovitch and P. irregularis Olive & Stoianovitch. Both species share the common features of long-stalked fruiting bodies with single, uninucleate, deciduous spores and trophic states that consist solely of uninucleate amoebae, but they are quite different with respect to their detailed structure at both the light and electron microscopic levels. Based on this evidence, it seems unlikely that the species are congeneric, and it is proposed that P. irregularis be assigned to Soliformovum n. g. Examination of other species of Protostelium indicates that P. nocturnum Spiegel should be retained in the genus and that P. expulsum Olive & Stoianovitch should be reassigned to Soliformovum. The group most closely related to Protostelium, under this new concept, is the genus Planoprotostelium Olive & Stoianovitch, while Soliformovum is best treated as a genus of Eumycetozoa incertae sedis, though it does share some similarities with the group that includes the genera Ceratiomyxella Olive & Stoianovitch, Nematostelium Olive & Stoianovitch, and Schizoplasmodium Olive & Stoianovitch.     

MONOGRAPH OF THE GENUS PROTOSTELIUM

Three new species of Protostelium (Order Protostelida of the Mycetozoa) are described: P. irregularis, P. zonatura, and P. pyriformis, all with rather wide distribution and occurring on dead attached plant parts, less often in soil and humus. The latter two species differ from the first and from the other two known species, P. mycophaga Olive and Stoianovitch and P. arachisporum Olive, in the endogenous origin of the stalk. P. mycophaga var. crassipes, with vesicular stalk bases, is the third variety of that species to be described. A key to the genus is included.     

Diverse Legionella‐Like Bacteria Associated with Testate Amoebae of the Genus Arcella (Arcellinida: Amoebozoa)

Diverse species of Legionella and Legionella‐like amoebal pathogens (LLAPs) have been identified as intracellular bacteria in many amoeboid protists. There are, however, other amoeboid groups such as testate amoeba for which we know little about their potential to host such bacteria. In this study, we assessed the occurrence and diversity of Legionella spp. in cultures and environmental isolates of freshwater arcellinid testate amoebae species, Arcella hemispherica, Arcella intermedia, and Arcella vulgaris, via 16S rRNA gene sequence analyses and fluorescent in situ hybridization (FISH). Analysis of the 16S rRNA gene sequences indicated that A. hemispherica, A. intermedia, and A. vulgaris host Legionella‐like bacteria with 94–98% identity to other Legionella spp. based on NCBI BLAST search. Phylogenetic analysis placed Legionella‐like Arcella‐associated bacteria (LLAB) in three different clusters within a tree containing all other members of Legionella and LLAPs. The intracellular localization of the Legionella within Arcella hosts was confirmed using FISH with a Legionella‐specific probe. This study demonstrates that the host range of Legionella and Legionella‐like bacteria in the Amoebozoa extends beyond members of “naked” amoebae species, with members of the testate amoebae potentially serving an ecological role in the dispersal, protection, and replication of Legionella spp. in natural environments.     

The ultrastructure of the trophic cells of the protostelidPlanoprotθstelium aurantium

Summary The protostelidPlanoprotostelium aurantium Olive andStoianovitch has trophic cells which are either amoebae or flagellates. The general morphology and ultrastructure are consistent with what has been reported for otherEumycetozoa (protostelids, myxomycetes, and dictyostelids). The flagellar apparatus structure has the same basic pattern as that of other flagellate eumycetozoans. It shares with all these an anteriorly directed flagellum and centriole and microtubule arrays (MTA) 2–4. Unlike more primitive species which have two centrioles per flagellar apparatus,P. aurantium has only one. Also, the flagellar apparatus is independent of the nucleus inP. aurantium, not linked to it as in the primitive species. These features are useful in explaining the differences in swimming behavior betweenP. aurantium and biflagellate species. Evidence is presented to show thatP. aurantium is closely related to the non-flagellateProtostelium mycophaga Olive andStoianovitch.This research represents part of a Ph.D. dissertation presented to the University of North Carolina.     

Ptolemeba n. gen., a Novel Genus of Hartmannellid Amoebae (Tubulinea,Amoebozoa); with an Emphasis on the Taxonomy of Saccamoeba

Hartmannellid amoebae are an unnatural assemblage of amoeboid organisms that are morphologically difficult to discern from one another. In molecular phylogenetic trees of the nuclear‐encoded small subunit rDNA, they occupy at least five lineages within Tubulinea, a well‐supported clade in Amoebozoa. The polyphyletic nature of the hartmannellids has led to many taxonomic problems, in particular paraphyletic genera. Recent taxonomic revisions have alleviated some of the problems. However, the genus Saccamoeba is paraphyletic and is still in need of revision as it currently occupies two distinct lineages. Here, we report a new clade on the tree of Tubulinea, which we infer represents a novel genus that we name Ptolemeba n. gen. This genus subsumes a clade of hartmannellid amoebae that were previously considered in the genus Saccamoeba, but whose mitochondrial morphology is distinct from Saccamoeba. In accordance with previous research, we formalize the clade as distinct from Saccamoeba. Transmission electron microscopy of our isolates illustrate that both molecularly discrete species can be further differentiated by their unique mitochondrial cristal morphology.     

Schizoplasmodium,a Mycetozoan Genus Intermediate Between Cavostelium and Protostelium; a New Order of Mycetozoa*

SYNOPSIS. Two new species of the simple mycetozoan genus Schizoplasmodium—S. ovatum and S. gracile—are described, the former having ovate spores and the latter spherical ones. All stages of the life cycle are multinucleate. At sporulation the holozoic plasmodium segments into prespore cells which develop directly into long-stalked, single-spored sporocarps. Sexual reproduction was not observed. A new order—the PROTOSTELIDA—is proposed for this and related genera, which are believed to comprise a phylogenetically linked series, beginning with the amoebo-flagellate genus Cavostelium and evolving through Schizoplasmodium to Protostelium. The two families Cavostelidae (Cavostelium) and Protostelidae (Schizoplasmodium, Protostelium) are recognized.     

Two New Species of the Genus Plectrocnemia Stephens (Trichoptera: Polycentropodidae) from the Russian Far East

Two new species of the genus Plectrocnemia Stephens, Plectrocnemia levanidovae, sp. n., from Sakhalin Island and the southern Kuril Islands, and Plectrocnemia martynovae, sp. n., from southern Primorye, are described and illustrated. The new species belong to the P. tortosa Group and are the sister species of P. tortosa Banks, from China, and P. appensata Mey, from Vietnam.     

Morphological Characterizations of Four Species of Parallelostrombidium (Ciliophora,Oligotrichia), with a Note on the Phylogeny of the Genus

The morphology and phylogeny of four oligotrichid ciliates, Parallelostrombidium paraellipticum sp. n., P. dragescoi sp. n., P. jankowskii (Xu et al. 2009) comb. n., and P. kahli (Xu et al. 2009) comb. n., are described or redescribed based on live observation, protargol stained material, and SSU rRNA gene sequences. The new species P. paraellipticum sp. n. is characterized by its obovoidal cell shape, adoral zone composed of 17–21 collar, 9–11 buccal, and two thigmotactic membranelles, and extrusomes attached in one row along the girdle kinety. The new species P. dragescoi sp. n. is distinguished from its congeners by its obovoidal cell shape and a lack of thigmotactic membranelles. Based on ciliary patterns recognizable in the original slides, Omegastrombidium jankowskii Xu et al. 2009 and O. kahli Xu et al. 2009 should be transferred to the genus Parallelostrombidium Agatha 2004. Phylogenetic analyses based on SSU rRNA gene sequence data demonstrate that all four new sequences cluster with previously described congeners. The genus Parallelostrombidium is separated into two clusters, suggesting its non‐monophyly and probably corresponding to the two subgenera proposed by Agatha and Strüder‐Kypke (2014), as well as their morphological difference (cell dorsoventrally flattened vs. unflattened).     

Paramoeba: A Common Marine Genus

Amoebae of the genus Paramoeba Schaudinn, 1896, have been found in British waters, further attesting to the wide distribution and common occurrence of these unusually interesting marine protozoa. The British strains belong to the species P. pemaquidensis Page, 1970, first described from the Atlantic coast of North America. The Nebenkörper appears to be characteristic of a morphologically and systematically homogeneous group of amoebae.     

Phycodrys valentinae sp. nov. (Delesseriaceae, Rhodophyta) with Discussion of Other Species of the Phycodrys Genus from the North Pacific

A new species Phycodrys valentinae Seliv. et Zhigad. from the northwest of the Bering Sea, distinct from other species of the genus Phycodrys by the presence of a distromatic lamina and by the arrangement of basal generative prolifications, was described. Based on the analysis of the morphological and anatomic traits of species of the genus Phycodrys, P. serratiloba (Rupr.) A. Zin., which was considered as synonym of P. riggii Gardn. to the present [27, 28, 30], was reinstated as an independent species. The taxonomic status of other representatives of the genus Phycodrys of the studied region is considered. In our opinion, five species of the genus Phycodrys (P. serratiloba, P. riggii, P. amchitkensis, P. vinogradovae, and P. valentinae) grow in the seas of the Russian Far East.     

Systematics of spiny‐backed treefrogs (Hylidae: Osteocephalus): an Amazonian puzzle

Spiny‐backed tree frogs of the genus Osteocephalus are conspicuous components of the tropical wet forests of the Amazon and the Guiana Shield. Here, we revise the phylogenetic relationships of Osteocephalus and its sister group Tepuihyla, using up to 6134 bp of DNA sequences of nine mitochondrial and one nuclear gene for 338 specimens from eight countries and 218 localities, representing 89% of the 28 currently recognized nominal species. Our phylogenetic analyses reveal (i) the paraphyly of Osteocephalus with respect to Tepuihyla, (ii) the placement of ‘Hyla’ warreni as sister to Tepuihyla, (iii) the non‐monophyly of several currently recognized species within Osteocephalus and (iv) the presence of low (<1%) and overlapping genetic distances among phenotypically well‐characterized nominal species (e.g. O. taurinus and O. oophagus) for the 16S gene fragment used in amphibian DNA barcoding. We propose a new taxonomy, securing the monophyly of Osteocephalus and Tepuihyla by rearranging and redefining the content of both genera and also erect a new genus for the sister group of Osteocephalus. The colouration of newly metamorphosed individuals is proposed as a morphological synapomorphy for Osteocephalus. We recognize and define five monophyletic species groups within Osteocephalus, synonymize three species of Osteocephalus (O. germani, O. phasmatus and O. vilmae) and three species of Tepuihyla (T. celsae, T. galani and T. talbergae) and reallocate three species (Hyla helenae to Osteocephalus, O. exophthalmus to Tepuihyla and O. pearsoni to Dryaderces gen. n.). Furthermore, we flag nine putative new species (an increase to 138% of the current diversity). We conclude that species numbers are largely underestimated, with most hidden diversity centred on widespread and polymorphic nominal species. The evolutionary origin of breeding strategies within Osteocephalus is discussed in the light of this new phylogenetic hypothesis, and a novel type of amplexus (gular amplexus) is described.     

Systematics and diversification of Praomys species (Rodentia: Muridae) endemic to the Cameroon Volcanic Line (West Central Africa)

Missoup, A.D., Nicolas, V., Wendelen, W., Keming, E., Bilong Bilong, C.F., Couloux, A., Atanga, E., Hutterer, R. & Denys, C. (2012). Systematics and diversification of Praomys species (Rodentia: Muridae) endemic to the Cameroon Volcanic Line (West Central Africa). —Zoologica Scripta, 41, 327–345. Our integrative approach combines two mitochondrial genes (16S and cyt b gene), two nuclear genes (exon 10 GHR and exon 1 IRBP) and craniometrical data to test the status and to infer phylogenetic relationships of the three Praomys Cameroon Volcanic Line endemics (P. hartwigi, P. morio and P. obscurus). The taxonomic rank of the principal genus group is assessed and the mode of diversification of species of the P. tullbergi complex in Afrotropical forests is discussed based on estimates of times to the most recent common ancestors and on tree topologies. This study documents for the first time the molecular and morphometrical distinctiveness of P. hartwigi and P. morio within the P. tullbergi species complex. Further studies including specimens of P. hartwigi from all its distribution range are needed to conclude on the status of P. obscurus. The monophyly of the genus Praomys is refuted. Times to the most recent common ancestors of major clades within the P. tullbergi species complex are estimated for the last 2.5 Mya and during the last 1 or 2 Mya for different species or forms. The lowland forest refuge hypothesis might well explain the diversification of P. misonnei, P. rostratus and P. tullbergi in the guineo‐congolese forest block. The isolation of montane forests could have facilitated the divergence between the two montane forest forms P. hartwigi and P. obscurus and between populations of P. morio from the continent and those from the island of Bioko. Praomys populations (species) that inhabit the Cameroon Volcanic Line Praomys probably originated as lowland forms subsequently specialized to highland conditions.     

Notobaetis: A New Genus of Baetidae (Ephemeroptera) from South America

A new genus and species, Notobaetis penai, n. gen., n. sp., of Baetidae (Ephemeroptera), is described based upon reared specimens collected from the Cordoba Province of Argentina. This new genus appears to be phenetically intermediate between Baetis Leach and Centroptilum Eaton while possessing a unique combination of characters and one autapomorphic character.     

Evaluation of Comparative DNA Amplification Fingerprinting for Rapid Species Identification within the Genus Clusia

Understanding the taxonomiy of the tropical genus Clusia (Fam. Clusiaceae, Ord. Theales) has been hampered by the difficulties inherent in studying tropical dioecious, succulent, arborescent, epi- or hemiepiphytic taxa. Species identification by morphological traits often requires the terminal inflorescences and/or the succulent capsular fruits. To allow species differentiation based exclusively on vegetative tissue, a frequent necessity during ecological field studies, a procedure has been developed for rapid isolation of genomic DNA from Clusia leaf tissue followed by DNA amplification fingerprinting with a set of single arbitrary oligomer primers (23–27 mers). Fingerprints obtained with independent DNA preparations from one individual as well as DNA preparations from several individuals of the same species were identical for the major amplification products, although minor bands were somewhat variable. Polymorphic fingerprints have been obtained with 3 different primers for 3 Clusia species (C. minor L., C. alata Pl. & Tr., C. multiflora H. B. K.), and the related Oedematopus obovatus Spruce ex. PL (Clusiaceae). The interspecific Randomly Amplified Polymorphic Markers (RAPDs) thus obtained allow a rapid identification of vegetative tissue samples collected in the field, and will assist in a revision of the controversial taxonomy of the genus Clusia.     

The Neotropical genus Anaisus (Elateridae) and its relationship to the Pyrophorinae

Four species of the genus Anaissus Candeze are recognized and described or redescribed and a key for their identification is given; anandra sp.n., aurantium spn., fuscipes sp.n. and tarsalis Candeze (=spinipennis syn.n.). A new subgenus Auctumnalis is erected with aurantium as type-species. Two possible species from Brazil and French Guiana respectively are also reported. The systematic position of the genus is discussed in relation to the Neotropical Pyrophorinae, and on the basis of adult characters Anaissus is here assigned to the subfamily Pyrophorinae.     

Comparing Morphological and Molecular Estimates of Species Diversity in the Freshwater Genus Synura (Stramenopiles): A Model for Understanding Diversity of Eukaryotic Microorganisms

We performed a comparison of molecular and morphological diversity in a freshwater colonial genus Synura (Chrysophyceae, Stramenopiles), using the island of Newfoundland (Canada) as a case study. We examined the morphological species diversity in collections from 79 localities, and compared these findings to diversity based on molecular characters for 150 strains isolated from the same sites. Of 27 species or species-level lineages identified, only one third was recorded by both molecular and morphological techniques, showing both approaches are complementary in estimating species diversity within this genus. Eight taxa, each representing young evolutionary lineages, were recovered only by sequencing of isolated colonies, whereas ten species were recovered only microscopically. Our complex investigation, involving both morphological and molecular examinations, indicates that our knowledge of Synura diversity is still poor, limited only to a few well-studied areas. We revealed considerable cryptic diversity within the core S. petersenii and S. leptorrhabda lineages. We further resolved the phylogenetic position of two previously described taxa, S. kristiansenii and S. petersenii f. praefracta, propose species-level status for S. petersenii f. praefracta, and describe three new species, S. vinlandica, S. fluviatilis, and S. cornuta. Our findings add to the growing body of literature detailing distribution patterns observed in the genus, ranging from cosmopolitan species, to highly restricted taxa, to species such as S. hibernica found along coastal regions on multiple continents. Finally, our study illustrates the usefulness of combining detailed morphological information with gene sequence data to examine species diversity within chrysophyte algae.     

Morphology and Phylogeny of Two Novel Pleurostomatids (Ciliophora,Litostomatea), Establishing a New Genus

Pleurostomatida Schewiakoff, 1896 is a cosmopolitan order of ciliates. In the present study, we investigated two new pleurostomatid species, Apolitonotus lynni gen. et sp. nov. and Protolitonotus clampi sp. nov., with state‐of‐the‐art methods. Apolitonotus lynni lacks its oral extrusomes and its right kineties form an anterior semi‐suture near the dorsal margin. Based on these two features, the new genus Apolitonotus was established within the Protolitonotidae Wu et al., 2017. Protolitonotus clampi differs from its congeners by its size of 80–130 × 15–30 μm, 4–6 left, and 9–11 right kineties, extrusomes arranged along the oral slit, and two macronuclear nodules. Because Litonotus antarcticus possesses an anterior semi‐suture and oral extrusomes, it was transferred to the genus Protolitonotus, becoming P. antarctius comb. nov. (basionym Litonotus antarcticus Song and Wilbert, 2002). Phylogenetic analyses based on SSU rDNA sequences suggest a sister group relationship of P. clampi and the family Kentrophyllidae, and A. lynni is adelphotaxon to Litonotus gracilis, both within the order Pleurostomatida. Based on the new findings, an improved diagnosis for Protolitonotus was also provided.