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1.
Definitions are proposed for the independent and joint contributions that the chemical groups A and B make to the free energy of association of the ligand A?B with a receptor. The definitions are independent of the choice of the standard state and are consistent with the basic thermodynamic cycle relating the association of the ligands A?B, A?Y and X?B to the receptor Rappaport 1976. The basic idea is the use of the excess free energy of association of the ligand A?Y over the free energy of association of the reference ligand X?Y as the measure of the “independent” contribution of the group A to the binding. This definition allows the free energy of association of the ligand A?B to be written as the sum of the independent contributions of the groups A and B, their joint contribution, and an invariant free energy of association of the reference ligand with any receptor. With the appropriate definition of the receptor-reference ligand complex, water can be chosen as the reference ligand. Using ΔG(A?OH)?AG(HOH), ΔG(H?B?H)?ΔG(HOH) and ΔG(HO?C)?ΔG(HOH) as the definitions of the “independent” contributions of the chemical groups A, B and C to the binding of the ligand A?B?C, the joint contribution of the groups A and C to the binding is ΔG(A?B?C) ? ΔG(A?B?H) ? ΔG(H-B-C) + ΔG(H?B?H).  相似文献   

2.
Electron paramagnetic resonance (epr) studies demonstrate that at low levels of conalbumin (CA) saturation with Fe3+ or VO2+, a ph-dependent preference of the metal exists for different protein binding-site configurations,A, B, and C. The vanadyl ion epr spectra of mixed VO2+, Fe3+-conalbumin in which Fe3+ is preferentially bound to the N- or C-terminal binding site are consistent with all three configurations being formed at both metal sites. At high pH the spectra suggest interaction between binding sites. In the absence of HCO3?, VO2+ is bound almost exclusively in B configuration; a full binding capacity of 2 VO2+ per CA is retained. Stoichiometric amounts of HCO3? convert the epr spectrum from B to an A, B, C type. Addition of oxalate to bicarbonate-free preparations converts the B spectrum to an A′, B, C′ type where the B resonances have lost intensity to the A′ and C′ resonances but have not changed position. The data suggest that configuration B is anion independent and that only one equivalent of binding sites at pH 9 responds to the presence of HCO31? or oxalate by changing configuration but not metal binding capability. The form of the bound anion may be HCO3? rather than CO32?. The formation rate of the colored ferric conalbumin complex by oxidizing Fe2+ to Fe3+ in limited HCO3? at pH 9 is also consistent with one equivalent of sites having different anion requirements than the remaining sites. Increased NaCl or NaClO4 concentration or substitution of D2O for water as solvent affect the environment of bound VO2+, but the mechanisms of action are unknown.  相似文献   

3.
Molecular interactions of the three plastoquinone electron acceptors, QA, QB, and QC, in photosystem II (PSII) were studied by fragment molecular orbital (FMO) calculations. Calculations at the FMO-MP2/6-31G level using PSII models deduced from the X-ray structure of the PSII complexes from Thermosynechococcus elongatus provided the binding energies of QA, QB, and QC as ?56.1, ?37.9, and ?30.1 kcal/mol, respectively. The interaction energies with surrounding fragments showed that the contributions of lipids and cofactors were 0, 24 and 45 % of the total interaction energies for QA, QB, and QC, respectively. These results are consistent with the fact that QA is strongly bound to the PSII protein, whereas QB functions as a substrate and is exchangeable with other quinones and herbicides, and the presence of QC is highly dependent on PSII preparations. It was further shown that the isoprenoid tail is more responsible for the binding than the head group in all the three quinones, and that dispersion forces rather than electrostatic interactions mainly contribute to the stabilization. The relevance of the stability and molecular interactions of QA, QB, and QC to their physiological functions is discussed.  相似文献   

4.
Soluble antigen-antibody complexes composed of 3 M KCl-extracted L1210 antigens and alloantibody to L1210 given to C3H mice caused immunosuppression in the mice. This was reflected in part by the inhibition of cytophilic antibody receptors on macrophages which could be used as a measure of the suppression. Thymocytes or splenic T cells from mice treated with immune complexes could adoptively transfer the suppression to normal syngeneic mice. These cells, which we have termed suppressor inducers, were found to be Ia positive: specifically, I-A+, I-J?. Thus, treatment of the inducers with anti-la or anti-I-A antibodies and complement in vitro abrogated their ability to transfer the suppression to normal mice. In contrast treatment with anti-I-J serum and complement had no effect. Through a similar approach, the cooperating (acceptor) T cells were found to be I-A+, I-J?. Pretreatment of mice with anti-Ia or anti-I-A serum before the administration of antigen-antibody complexes prevented the inhibition of macrophages. This was due at least in part to steric hindrance of adjacent Fc receptors on the FcR+ T cells with which the complexes interacted. Early interaction of immune complexes with FcR+ T cells was in fact demonstrated directly by the inability of the complexes to induce suppression when FcR+ T cells were depleted. The thymocytes or splenic T cells from anti-Ia-pretreated mice failed to transfer the suppression to recipient mice. In contrast, treatment with either anti-Ia or anti-I-A after the immune complexes did not abrogate the generation of suppressor inducers. Treatment of normal recipient mice with anti-Ia serum in vivo before they received the suppressor inducer cells did not prevent cooperation between the two types of cells. By the same token, blocking of Ia antigens of the inducers in vitro with anti-Ia serum (without complement) also did not impair the cooperative interaction. These results indicate that antigen-antibody complexes generate I-A-positive, I-J-negative T-suppressor inducer cells from FcR+ naive T cells. These in turn interact with Ia-positive (I-A+ and I-J?) normal thymocytes or spleen T cells. This interaction most likely generates the ultimate suppressor T cells that suppress cytophilic antibody receptors on macrophages in vivo. However, the I-region determined antigens did not appear to be directly involved in the T-T interaction of suppressor inducer and acceptor cells.  相似文献   

5.
A frontal gel chromatographic procedure is illustrated whereby the equilibrium constant for hybridization equilibria (A + B ? C + D) may be obtained provided the relative elution volume situation VA = VC <VB = VD may be realized. The electron transfer between reduced cytochrome c and ferricyanide is used as a model interaction, with Sephadex G-25 as the gel medium.  相似文献   

6.
《Behavioural processes》1996,38(2):119-130
The ability of pigeons to form configural stimulus representations was assessed in two operant discrimination experiments. In Experiment 1 the transverse patterning problem of Spence (1952) was trained. In Phase 1, subjects had to choose stimulus A on A + B — trials; B + C — trials were added in Phase 2. In Phase 3, the first two pairs were combined with C + A — trials. The success of the subjects was simulated by a model assuming that elemental and configural stimulus representations coexist in a stable proportion, even in the phases of the experiment which do not require configural stimulus representations for successful solution. Experiment 2 replicated the first two phases of Experiment 1, but trained A + C — in Phase 3. Comparison of the results of this experiment with simulations of the model showed that elemental and configural stimulus representations coexisted in similar proportions as in Experiment 1, even though they were not necessary for successful task solution.  相似文献   

7.
Near-infrared reflectance spectroscopy (NIRS) has been used extensively in the forage industry for rapid measurement of forage constituents and could be useful for determining quality of biomass feedstocks at the point of delivery. In previous work, we developed an assay that partitions feedstock carbohydrates based on their availability to be converted to fermentable sugars, including non-structural carbohydrates (C N), biochemically available carbohydrates (C B) with an associated first-order availability rate constant (k B), and unavailable carbohydrates (C U ). Additional quality parameters measured included neutral detergent lignin (NDL), total available carbohydrates (C A), and total carbohydrates (C T). We evaluated the variability of biomass quality parameters in a set of corn stover samples and developed calibration equations for determining parameter values using NIRS. Fifty-two corn stover samples harvested in Iowa and Wisconsin in 2005 and 2006 were analyzed using a high-throughput assay for determining feedstock quality for biochemical conversion. Non-structural carbohydrates ranged from 84 to 155?g?kg?1 dry matter (DM); C B ranged from 354 to 557?g?kg?1 DM; k B ranged from 0.199 to 0.330?h?1; C A ranged from 463 to 699?g?kg?1 DM, and NDL ranged from 32 to 74?g?kg?1 DM. Significant differences (P?<?0.0001) among samples were observed for all parameters, except k B. Near-infrared reflectance spectroscopy calibration equations were developed for C N, C B, C A, C U , C T, and NDL. It was not possible to generate a meaningful calibration equation for k B. There is significant variability within the corn stover population for several key quality-related carbohydrate and lignin constituents which can be predicted reliably using NIRS.  相似文献   

8.
Karyotypes of twelve species from twenty-four localities in southern Moravia and one locality in Slovakia were investigated. Their counts or karyotypic formulae are as follows:Chenopodium foliosum (Moench) Ascherson: K (2n)=18=16 Am+2 Bsm;Astragalus austriacus Jacq.: K (2n)=16=8 Am+8 Bsm;Astragalus exscapus L.: K (2n)=16=10 Am+4 Bsm+2 Cst;Astragalus cicer L.: K (2n)=64;Astragalus onobrychis L.: K (2n=64 and K (2n)=64+1;Vicia dumetorum L.: K (2n=14=10 Am+4 Bsm;Vicia sylvatica L.: K (2n)=14=2 Am+10 Bsm+2 Cst;Vicia pisiformis L.: K (2n)=12=8 Am+4 Bsm;Vicia cassubica L.: K (2n)=12=4 Am+6 Bsm+2 Cst;Vicia cracca L. (from five localities in southern Moravia): K (2n)=28=4 Am+12 Bsm+12 Cst and K (2n)=28+1=5 Am+12 Bsm+12 Cst;Vicia cracca L. (from one locality in Slovakia): K (2n)=14=2 Am+6 Bsm+6 Cst;Vicia tenuifolia Roth: K (2n)=24=4 Am+16 Bsm+4 Cst;Serratula lycopifolia (Vill.) Kern.: K (2n)=60.  相似文献   

9.
Published data on the association between GSK3B ?50C/T (rs334558) and bipolar disorder (BD) are inconclusive. We performed this meta-analysis to evaluate the relationship of this single-nucleotide polymorphism with the susceptibility, and with the age at onset of BD. A literature search was conducted though PubMed, EMBASE, Web of Science and China National Knowledge Infrastructure databases to identify relevant studies up to February 14, 2014. We identified a total of 6 publications including 1,251 cases and 1,804 controls to investigate the effect of GSK3B ?50C/T on BD risk, and found no significant association in any genetic models (C vs. T: OR = 1.03, 95 % CI: 0.92–1.15; CC vs. TT+TC: OR = 1.04, 95 % CI: 0.84–1.28; TC+CC vs. TT: OR = 1.16, 95 % CI: 0.97–1.39; and CC vs. TC vs. TT: OR = 1.08, 95 % CI: 0.96–1.22). Subgroup analysis by ethnicity did not change the results. The association between GSK3B ?50C/T and age at onset of BD was explored by 6 identified studies with a total of 659 BD type I patients. Similarly, we did not observe significant results in any genetic models (TC+CC vs. TT: SMD = 0.20, 95 % CI: ?0.07 to 0.47; CC vs. TT+TC: SMD = 0.11, 95 % CI: ?0.10 to 0.32; CC vs. TT: SMD = 0.32, 95 % CI: ?0.13 to 0.77). The power analysis and tests for publication bias ensured the reliability of our results. In summary, this meta-analysis suggests that the functional polymorphism ?50C/T within the GSK3B gene promoter is unlikely to relate with BD risk. However, more larger and well-designed studies are still needed to yield a conclusive result on the topic.  相似文献   

10.
Genetic Relationships Within and Between Capsicum Species   总被引:1,自引:0,他引:1  
Genetic relationships were estimated among 24 accessions belonging to 11 species of Capsicum, using 2,760 RAPD markers based on touch-down polymerase chain reactions (Td-RAPD-PCR). These markers were implemented in analyses of principal coordinates, unweighted pair group mean average, and 2,000 bootstrap replications. The accessions were divided into four groups, corresponding to previously described Capsicum complexes: C. annuum complex (CA), C. baccatum complex (CB), C. pubescens complex (CP), and C. chacoense accessions (CA/B). Their overall mean genetic similarity index was 0.487 ± 0.082, ranging from 0.88 to 0.32, based on Jaccard’s coefficient. The highest genetic variation was observed among the accessions in CP; the accessions in CB had a low level of variation as judged from the standard deviations of the genetic similarity indices. Based on the Td-RAPD-PCR markers, the 24 accessions were divided into four major groups, three of which corresponded to the three distinct Capsicum complexes. Accessions of C. chacoense were found to be equally related to complexes CA, CB, and CP.  相似文献   

11.
《Behavioural processes》1997,39(1):95-112
This study addressed pigeons' abilities to form transitive inferences and the mechanism by which they do so. Subjects were trained on four operant discriminations in a 5-term series-A + B − , B + C − , C + D − and D + E − (where [ + ] denotes reward, and [ −] non-reward in choice). In unreinforced tests, choice of B over D is evidence of transitive inference formation. Training proceeded without the subjects being presented the training pairs in blocks. Results show that randomized training degrades the performance of pigeons, just as it does human subjects, but that some subjects can still respond transitively under these conditions. In addition, the results support reinforcement models of transitive inference performance.  相似文献   

12.
The genetic relationships and diversity within the European and Asiatic Buxus species were analysed using AFLP, genome size analysis and chromosome counts. Based on these results two major clusters could be defined. One genetic cluster contained B. sempervirens and B. balearica, European species, and B. colchica, an Asiatic species but with leaf morphology similar to B. sempervirens. Species in this cluster were characterised by a genome size between 1.38 and 1.69?pg?2C?1 and a chromosome number of 2n?=?2x?=?28 (diploid). Only four B. sempervirens cultivars within this cluster were triploid. A second cluster contained the Asiatic Buxus species B. microphylla, B. harlandii, B. hyrcana, B. myrica, B. henryi, B. bodinieri and B. wallichiana. Within this second genetic cluster three different ploidy levels could be observed. B. harlandii, B. hyrcana and nine B. microphylla cultivars were tetraploid (2n?=?4x?=?56) with a genome size of >2.5?pg?2C?1. Fifteen other B. microphylla cultivars were triploid (2n?=?3x?=?42). The other Asiatic Buxus species, B. henryi, B. bodinieri and eight B. microphylla cultivars, were diploid with a genome size of ca. 1.5?pg?2C?1.  相似文献   

13.
The isomeric cyclam ligands Me8[14]anes, designated by LA, LB and LC, produce, on reaction with zinc(II)nitrate, zinc(II)sulphate or zinc(II)chloride corresponding complexes, i.e. dinitrato/mononitrato-nitrate complexes [ZnL(NO3)2]/[ZnL(NO3)](NO3) (L = LA, LB or LC, where the indices A, B and C refer to differing orientations of the four methyl groups on secondary carbons of Me8[14]ane), the diaqua-sulphates [ZnL(H2O)2]SO4 (L = LA, LB or LC), and the diaqua dichloride and dichlorido complexes [ZnL(H2O)2]Cl2 (L = LA or LC) or [ZnLBCl2], respectively. The complexes have been characterised on the basis of elemental analyses, IR, UV-Vis, 1H and 13C NMR spectroscopies, magnetic and conductance data. The structure of [ZnLB(NO3)](NO3) has been determined by X-ray crystallography. The zinc centre is coordinated to a N4O donor set in a square-pyramidal geometry. The complexes show differing electrolytic behaviour in different solvents. In chloroform, the complexes are non-electrolytes, indicating that both anions are coordinated to Zn2+. Antifungal activity of the ligands and complexes against the phytopathogenic fungi Alternaria alternata and Colletotrichum corcolei have been investigated, and positive results were noted.  相似文献   

14.
Corn (Zea mays L.) plants were assayed for nitrogenase activity (C2H2 reduction) during early ear development. Hybrid corn and inbred lines were grown separately at two experimental fields in New Jersey. Acetylene-dependent ethylene production was observed a few hours after harvest, from the field, on intact plants, root-soil cores, lower stem segments, and excised roots, all assayed under air and not preincubated previously. Incubation of excised roots at 1% O2 resulted in lower rates of C2H2 reduction. The time course of C2H2 reduction by excised roots, assayed in air, was similar for all genotypes studied (two hybrids, eight inbreds, and a cross of corn × teosinte) and indicated that a long preincubation at reduced O2 is not absolutely required for early detection of nitrogenase activity. Isolation of N2-fixing bacteria from within the roots and stems, together with the diurnal fluctuation of nitrogenase activity in response to day/night cycles, were indicative of a close association with plant function. Collectively, the results provided strong evidence for the occurrence of nitrogenase activity associated with corn plants growing in a temperate climate and dependent upon indigenous N2-fixing bacteria.  相似文献   

15.
The type VI secretion system (T6SS) contributes to the virulence of Burkholderia cenocepacia, an opportunistic pathogen causing serious chronic infections in patients with cystic fibrosis. BcsKC is a highly conserved protein among the T6SSs in Gram-negative bacteria. Here, we show that BcsKC is required for Hcp secretion and cytoskeletal redistribution in macrophages upon bacterial infection. These two phenotypes are associated with a functional T6SS in B. cenocepacia. Experiments employing a bacterial two-hybrid system and pulldown assays demonstrated that BcsKC interacts with BcsLB, another conserved T6SS component. Internal deletions within BcsKC revealed that its N-terminal domain is necessary and sufficient for interaction with BcsLB. Fractionation experiments showed that BcsKC can be in the cytosol or tightly associated with the outer membrane and that BcsKC and BcsLB form a high molecular weight complex anchored to the outer membrane that requires BcsFH (a ClpV homolog) to be assembled. Together, our data show that BcsKC/BcsLB interaction is essential for the T6SS activity in B. cenocepacia.  相似文献   

16.
The effect of a mutation affecting flocculation, differentiation into cyst-like forms, and root colonization on nitrogenase expression by Azospirillum brasilense is described. The gene flcA of strain Sp7 restored these phenotypes in spontaneous mutants of both strains Sp7 and Sp245. Employing both constitutive pLA-lacZ and nifH-lacZ reporter fusions expressed in situ, the colony morphology, colonization pattern, and potential for nitrogenase activity of spontaneous mutants and flcA Tn5-induced mutants were established. The results of this study show that the ability of Sp7 and Sp245 mutant strains to remain in a vegetative form improved their ability to express nitrogenase activity in association with wheat in a hydroponic system. Restoring the cyst formation and colonization pattern to the spontaneous mutant Sp7-S reduced nitrogenase activity rates in association with plants to that of the wild-type Sp7. Although Tn5-induced flcA mutants showed higher potentials for nitrogenase expression than Sp7, their potentials were lower than that of Sp7-S, indicating that other factors in this strain contribute to its exceptional nitrogenase activity rates on plants. The lack of lateral flagella is not one of these factors, as Sp7-PM23, a spontaneous mutant impaired in swarming and lateral-flagellum production but not in flocculation, showed wild-type nitrogenase activity and expression. The results also suggest factors of importance in evolving an effective symbiosis between Azospirillum and wheat, such as increasing the availability of microaerobic niches along the root, increased supply of carbon sources by the plant, and the retention of the bacterial cells in vegetative form for faster metabolism.  相似文献   

17.
IL1 receptor antagonist (IL1RA) and IL1beta (IL1β), members of the pro-inflammatory cytokine interleukin-1 (IL1) family, play a potential role against infection and in the pathogenesis of cancers. The variable number of tandem repeats (VNTR) polymorphism in the second intron of the IL1 receptor antagonist gene (IL1-RN) and a polymorphism in exon 5 of IL1B (IL1B+3954C>T, rs1143634) have been suggested in predisposition to cancer risk. However, studies have shown inconsistent results. To validate any association, a meta-analysis was performed with 14,854 cases and 19,337 controls from 71 published case–control studies for IL1-RN VNTR and 33 eligible studies contained 7,847 cases and 8917 controls for IL1B +3954. Odds ratios (ORs) with 95% confidence intervals (CIs) were calculated from comparisons to assess the strength of the association. There was significant association between the IL1-RN VNTR polymorphism and the risk of cancer for any overall comparison. Furthermore, cancer type stratification analysis revealed that there were significantly increased risks of gastric cancer, bladder cancer and other cancer groups. Infection status analysis indicated that the H. pylori or HBV/HCV infection and IL1-RN VNTR genotypes were independent factors for developing gastric or hepatocellular cancers. In addition, a borderline significant association was observed between IL1B+3954 polymorphism and the increased cancer risk. Although some modest bias could not be eliminated, this meta-analysis suggested that the IL1-RN VNTR polymorphisms may contribute to genetic susceptibility to gastric cancer. More studies are needed to further evaluate the role of the IL1B+3954 polymorphism in the etiology of cancer.  相似文献   

18.
Methylmercury(II) and mercury(II) complexes of imidazole (1), 1-methylimidazole (2), and the 1,3-dimethylimidazolium ion (3) have been prepared in aqueous or ethanolic solution. Elemental analysis and 1H nmr spectroscopy have been used to characterize the complexes. The MeHg (Me = methyl) binding sites have been identified as N1, N3 (1), N3, C2 (2), and C2 (3). Reaction with HgO leads to the formation of Hg-bridged complexes of the type Im-Hg-Im, (Im = imidazole), where bonding occurs through N1 (1) and C2 (3); the latter is also formed as a result of symmetrization of the C2-bound MeHg complex. The formation of the C2-bound (carbene) complexes is discussed in terms of the increased acidity of the C2 proton resulting from coordination of an electrophilic species at N3. Based on electrostatic considerations, there appears to be a “minimum degree of activation” required before C2 bonding can occur, which explains the lack of this coordination mode in 1. 199Hg-1H spin-spin coupling (4J) is observed for C-bound mercury, but not for N-bound mercury, which is interpreted in terms of a decreased ligand exchange rate in the former case, due to the greater stability of the Hg-C bond. 2J coupling constants measured in (CD3)2SO for a number of MeHg complexes of heterocyclic ligands (including the imidazoles of the present study) correlate well with the ligand pKa (25°C, aqueous solution), according to 2J = ?3.88 pKa + 248.5. Results in the present work are discussed in relation to our previous work with nucleosides. The significance of the results to biological systems is considered.  相似文献   

19.
Two glucomannans (A and B), and an attendant polysaccharide (C) have been isolated from the tubers of Arum orientale (L.) by gel chromatography. Glucomannan B was found to be composed of d-glucose and d-mannose in a molar ratio of 2:3·1, and traces of uronic acid. IR spectra, enzymatic hydrolysis with α- and β-amylase, and periodate oxidation followed by reduction, showed the presence of a β-(1→4) glucoside linkage in this glucomannan, and of hexose residues in a β-pyranose form.  相似文献   

20.
The structures of the two title C-glycopyranosylarene nucleosides have been determined by X-ray diffraction. The aim of this work was to relate the conformation around the extracyclic C-1C-7 bond to steric hindrance between the pyranose and benzene rings. The torsion angles observed in the two compounds (O-5C-1C-7C-8: +61,7° for 1, ?13,4° for 2) signify of a C-2 configurational modification. Moreover, the interaction between O-5 and an o-phenyl hydrogen could explain the particular conformation of the aryl substituent in 2.  相似文献   

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