A large‐scale survey of heterochrony in anuran cranial ossification patterns

Most anurans have a biphasic life cycle, which includes metamorphosis from a tadpole stage to an adult frog. This process involves extensive transformations of the cranial skeleton, which have been of long‐standing interest with respect to anuran skeletal evolution and taxonomy. In this study, large‐scale patterns of anuran skeletal ossification are assessed by collecting the most comprehensive data set on anuran cranial ossification to date from the literature, including data for 45 anuran and one caudate outgroup species. Ossification sequences were translated into event‐pair matrices for explorative phylogenetic analysis and phylogenetically informed parsimony search for heterochrony using the Parsimov algorithm. Rank variability of single bones across species was also analysed. Little phylogenetic signal was retrieved from a parsimony‐based phylogenetic analysis of event‐pairs, and only a few species that are generally agreed to be closely related are placed close to each other (e.g. some Pipidae and Costata). Parsimov analysis revealed some clade‐specific heterochrony in anuran clades of varying inclusiveness. Our results show that relating heterochronic changes in anuran cranial ontogeny to parameters such as direct development or miniaturization is problematic because of the high evolvability of cranial ossification sequences. Rank variation analysis suggests that anuran cranial bones are highly variable in their sequence positioning, possibly because tadpole and adult cranial morphology do not co‐evolve. Elements which are lost in some species ossify at the end of the sequence, providing evidence for the notion that failure of anuran cranial elements to ossify is due to processes of paedomorphosis.     

Cooperation,collective action,and the archeology of large‐scale societies

Archeologists investigating the emergence of large‐scale societies in the past have renewed interest in examining the dynamics of cooperation as a means of understanding societal change and organizational variability within human groups over time. Unlike earlier approaches to these issues, which used models designated voluntaristic or managerial, contemporary research articulates more explicitly with frameworks for cooperation and collective action used in other fields, thereby facilitating empirical testing through better definition of the costs, benefits, and social mechanisms associated with success or failure in coordinated group action. Current scholarship is nevertheless bifurcated along lines of epistemology and scale, which is understandable but problematic for forging a broader, more transdisciplinary field of cooperation studies. Here, we point to some areas of potential overlap by reviewing archeological research that places the dynamics of social cooperation and competition in the foreground of the emergence of large‐scale societies, which we define as those having larger populations, greater concentrations of political power, and higher degrees of social inequality. We focus on key issues involving the communal‐resource management of subsistence and other economic goods, as well as the revenue flows that undergird political institutions. Drawing on archeological cases from across the globe, with greater detail from our area of expertise in Mesoamerica, we offer suggestions for strengthening analytical methods and generating more transdisciplinary research programs that address human societies across scalar and temporal spectra.     

Response of soil nematode communities to long-term application of inorganic fertilizers in the black soil of Northeast China

The effects of inorganic fertilizers on soil nematode communities were studied in a long-term fertilization experimental field in the Black Soil Region of Northeast China, where no fertilizer (CK), N fertilizer (N), combined application of N and P (NP), combined application of N and K (NK), and combined application of N, P and K (NPK) were compared. The results showed that the total nematode abundance was not affected significantly by inorganic fertilizers in the long-term field experiment. The numbers of bacterivores increased significantly in the NP treatment compared to the CK treatment, and those of fungivores and plant-parasites were inhibited in the NPK treatment. The similarity between CK and NPK treatment and the nematode diversity were higher than in other treatments. The stability of the soil ecosystem was disturbed by the inorganic fertilizers, as indicated by the change in MI values under different treatments. The response of soil nematodes mainly depended on the types of inorganic fertilizers applied.     

Response of soil nematode communities to long-term application of inorganic fertilizers in the black soil of Northeast China

The effects of inorganic fertilizers on soil nematode communities were studied in a long-term fertilization experimental field in the Black Soil Region of Northeast China,where no fertilizer (CK),N fertilizer (N),combined application of N and P (NP),combined application of N and K (NK),and combined application of N,P and K (NPK) were compared.The results showed that the total nematode abundance was not affected significantly by inorganic fertilizers in the long-term field experiment.The numbers of bacterivores increased significantly in the NP treatment compared to the CK treatment,and those of fungivores and plant-parasites were inhibited in the NPK treatment.The similarity between CK and NPK treatment and the nematode diversity were higher than in other treatments.The stability of the soil ecosystem was disturbed by the inorganic fertilizers,as indicated by the change in MI values under different treatments.The response of soil nematodes mainly depended on the types of inorganic fertilizers applied.     

Hemispheric‐scale patterns of climate‐related shifts in planktonic diatoms from North American and European lakes

A synthesis of over 200 diatom‐based paleolimnological records from nonacidified/nonenriched lakes reveals remarkably similar taxon‐specific shifts across the Northern Hemisphere since the 19th century. Our data indicate that these diatom shifts occurred in conjunction with changes in freshwater habitat structure and quality, which, in turn, we link to hemispheric warming trends. Significant increases in the relative abundances of planktonic Cyclotella taxa (P<0.01) were concurrent with sharp declines in both heavily silicified Aulacoseira taxa (P<0.01) and benthic Fragilaria taxa (P<0.01). We demonstrate that this trend is not limited to Arctic and alpine environments, but that lakes at temperate latitudes are now showing similar ecological changes. As expected, the onset of biological responses to warming occurred significantly earlier (P<0.05) in climatically sensitive Arctic regions (median age=ad 1870) compared with temperate regions (median age=ad 1970). In a detailed paleolimnological case study, we report strong relationships (P<0.005) between sedimentary diatom data from Whitefish Bay, Lake of the Woods (Ontario, Canada), and long‐term changes in air temperature and ice‐out records. Other potential environmental factors, such as atmospheric nitrogen deposition, could not explain our observations. These data provide clear evidence that unparalleled warming over the last few decades resulted in substantial increases in the length of the ice‐free period that, similar to 19th century changes in high‐latitude lakes, likely triggered a reorganization of diatom community composition. We show that many nonacidified, nutrient‐poor, freshwater ecosystems throughout the Northern Hemisphere have crossed important climatically induced ecological thresholds. These findings are worrisome, as the ecological changes that we report at both mid‐ and high‐latitude sites have occurred with increases in mean annual air temperature that are less than half of what is projected for these regions over the next half century.     

Large geographical differences in the sensitivity of ice‐covered lakes and rivers in the Northern Hemisphere to temperature changes

Based on a unique dataset of more than 50 000 observations of ice phenology from 1213 lakes and 236 rivers in 12 different countries, we show that interannual variations in the timing of ice‐on and ice‐off on lakes and rivers are not equally pronounced over the entire Northern Hemisphere, but increase strongly towards geographical regions that experience only short periods during which the air temperature falls below 0 °C. We explain our observations by interannual fluctuation patterns of air temperature and suggest that lake and river ecosystems in such geographical regions are particularly vulnerable to global warming, as high interannual variability is known to have important ramifications for ecosystem structure and functioning. We estimate that the standard deviation of the duration of ice cover, viewed as a measure of interannual variability, exceeds 25 days for lakes and rivers located on 7% of the land area of the Northern Hemisphere. Such high variability might be an early warning signal for a critical transition from strictly dimictic, ice‐covered systems to monomictic, open‐water systems. Using the Global Lake and Wetland Database, we suggest that 3.7% of the world's lakes larger than 0.1 km² are at high risk of becoming open‐water systems in the near future, which will have immediate consequences for global biogeochemical cycles.     

Thermophilic enrichment of microbial communities in the presence of the ionic liquid 1‐ethyl‐3‐methylimidazolium acetate

Aims

The aim of the study was to develop an approach to enrich ionic liquid tolerant micro‐organisms that efficiently decompose lignocellulose in a thermophilic and high‐solids environment.

Methods and Results

High‐solids incubations were conducted, using compost as an inoculum source, to enrich for thermophilic communities that decompose switchgrass in the presence of the ionic liquid 1‐ethyl‐3‐methylimidazolium acetate ([C2mim][OAc]). Ionic liquid levels were increased from 0 to 6% on a total weight basis incrementally. Successful enrichment of a community that decomposed lignocellulose at 55°C in the presence of 6% [C2mim][OAc] was achieved, when the [C2mim][OAc] level was increased stepwise from 2% to 4% to 5% to 6%. Pyrosequencing results revealed a shift in the community and a sharp decrease in richness, when thermophilic conditions were applied.

Conclusions

A community tolerant to a thermophilic, high‐solids environment containing 6% [C2mim][OAc] was enriched from compost. Gradually increasing [C2mim][OAc] concentrations allowed the community to adapt to [C2mim][OAc].

Significance and Impact of the Study

A successful approach to enrich communities that decompose lignocellulose under thermophilic high‐solids conditions in the presence of elevated levels of [C2mim][OAc] has been developed. Communities yielded from this approach will provide resources for the discovery of enzymes and metabolic pathways relevant to biomass pretreatment and fuel production.     

Nuisance growth of Juncus bulbosus: the roles of genetics and environmental drivers tested in a large‐scale survey

1. Invasive species can transform aquatic ecosystems, and the nuisance growth of the freshwater macrophyte Juncus bulbosus has become a problem in many lakes and rivers in northern Europe. It affects biodiversity strongly and conflicts with human uses, not least compromising the generation of hydroelectricity. The causes of the proliferation of these massive stands of J. bulbosus are not finally resolved, however. 2. In this study, a wide range of catchment, lake and sediment parameters (n = 34) were assessed for 139 lakes in Southern Norway, with the aim of explaining the presence or absence of J. bulbosus and to assess potential drivers behind its prolific growth. 3. Juncus bulbosus was more often present in lakes with lower pH and phosphate concentrations, and a higher element ratio of dissolved inorganic nitrogen (DIN) to total phosphorus (DIN : TotP). 4. Despite the many parameters measured across substantial environmental gradients, none explained nuisance growth. Genetic screening (amplified fragment length polymorphism fingerprinting) of plants from a subset of lakes and additional river sites also showed no genetic differences between the various growth forms. A macrophyte trophic index, however, suggested that the most problematic growth occurred in the most oligotrophic lakes. 5. The lack of consistent patterns may reflect either factors not assessed in our survey, or that the current extension of stands represents a gradual cumulative response over time, not characterised effectively in our snapshot survey. Nevertheless, we can now exclude some putative causes of nuisance growth, including in particular genetics and N‐deposition.     

Microbial laboratory evolution in the era of genome‐scale science

Laboratory evolution studies provide fundamental biological insight through direct observation of the evolution process. They not only enable testing of evolutionary theory and principles, but also have applications to metabolic engineering and human health. Genome‐scale tools are revolutionizing studies of laboratory evolution by providing complete determination of the genetic basis of adaptation and the changes in the organism's gene expression state. Here, we review studies centered on four central themes of laboratory evolution studies: (1) the genetic basis of adaptation; (2) the importance of mutations to genes that encode regulatory hubs; (3) the view of adaptive evolution as an optimization process; and (4) the dynamics with which laboratory populations evolve.     

A global meta‐analysis of the relative extent of intraspecific trait variation in plant communities

Recent studies have shown that accounting for intraspecific trait variation (ITV) may better address major questions in community ecology. However, a general picture of the relative extent of ITV compared to interspecific trait variation in plant communities is still missing. Here, we conducted a meta‐analysis of the relative extent of ITV within and among plant communities worldwide, using a data set encompassing 629 communities (plots) and 36 functional traits. Overall, ITV accounted for 25% of the total trait variation within communities and 32% of the total trait variation among communities on average. The relative extent of ITV tended to be greater for whole‐plant (e.g. plant height) vs. organ‐level traits and for leaf chemical (e.g. leaf N and P concentration) vs. leaf morphological (e.g. leaf area and thickness) traits. The relative amount of ITV decreased with increasing species richness and spatial extent, but did not vary with plant growth form or climate. These results highlight global patterns in the relative importance of ITV in plant communities, providing practical guidelines for when researchers should include ITV in trait‐based community and ecosystem studies.     

The twelve theories of co‐existence in plant communities: the doubtful,the important and the unexplored

Background: Twelve distinct explanations have been proposed for the co‐existence of species in ecological communities. Types of mechanism: The mechanisms can be divided into those that are stabilizing, i.e. with an increase‐when‐rare mechanism, and those that are equalizing, the latter on their own only delaying the exclusion of species. However, by evening out fitness, equalizing mechanisms can facilitate the operation of stabilizing mechanisms. Importance: It is suggested that circular interference networks, co‐evolution of similar interference ability, cyclic succession, equal chance (neutrality) and initial patch composition are likely to be unimportant, or perhaps not even occur. Equal chance is an equalizing mechanism. Allogenic disturbance, alpha‐niche differentiation, environmental fluctuation (relative non‐linearity and/or the storage effect) and pest pressure are probably important. All four are stabilizing. More evidence is needed on aggregation, interference/dispersal trade‐offs and the spatial mass effect. Aggregation and the spatial mass effect are equalizing. Suggestions are made of the evidence needed to make informed judgements on which contribute the most to co‐existence in plant communities.     

Modifications in DARPP‐32 phosphorylation pattern after repeated palatable food consumption undergo rapid habituation in the nucleus accumbens shell of non‐food‐deprived rats

In non‐food‐deprived rats a palatable meal induces a transient increase in dopamine output in the prefrontal cortex and nucleus accumbens shell and core; habituation to this response develops with a second palatable meal, selectively in the shell, unless animals are food‐deprived. A palatable meal also induces time‐dependent modifications in the dopamine and cAMP‐regulated phosphoprotein of Mr 32 000 (DARPP‐32) phosphorylation pattern that are prevented when SCH 23390, a selective dopamine D₁ receptor antagonist, is administered shortly after the meal. This study investigated whether dopaminergic habituation in the shell had a counterpart in DARPP‐32 phosphorylation changes. In non‐food‐deprived rats, two consecutive palatable meals were followed by similar sequences of modifications in DARPP‐32 phosphorylation levels in the prefrontal cortex and nucleus accumbens core, while changes after the second meal were blunted in the shell. In food‐deprived rats two consecutive meals also induced similar phosphorylation changes in the shell. Finally, SCH 23390 administered shortly after the first palatable meal in non‐food‐deprived rats inhibited DARPP‐32 phosphorylation changes in response to the first meal, and prevented the habituation to a second meal in terms of dopaminergic response and DARPP‐32 phosphorylation changes. Thus, dopamine D₁ receptor stimulation plays a role in the development of habituation.