Drastic changes in aquatic bacterial populations from the Cuatro Cienegas Basin (Mexico) in response to long-term environmental stress

Understanding the changes of aquatic microbial community composition in response to changes in temperature and ultraviolet irradiation is relevant for predicting biogeochemical modifications in the functioning of natural microbial communities under global climate change scenarios. Herein we investigate shifts in the bacterioplankton composition in response to long-term changes in temperature and UV radiation. For this purpose, 15 mesocosms were seeded with composite aquatic microbial communities from natural pools within the Cuatro Cienegas Basin (Mexican Chihuahuan desert) and were subject to different temperatures and UV conditions. 16S rRNA gene clone libraries were obtained from water samples at the mid-point (4 months) and the end of the experiment (8 months). An increase in bacterial diversity over time was found in the treatment of constant temperature and UV protection, which suggests that stable environments promote the establishment of complex and diverse bacterial community. Drastic changes in the phylogenetic bacterioplankton composition and structure were observed in response to fluctuating temperature and increasing UV radiation and temperature. Fluctuating temperature induced the largest decrease of bacterial richness during the experiment, indicating that frequent temperature changes drive the reduction in abundance of several species, most notably autotrophs. The long-term impact of these environmental stresses reduced diversity and selected for generalist aquatic bacterial populations, such as Porphyrobacter. These changes at the community level occur at an ecological time scale, suggesting that under global warming scenarios cascade effects on the food web are possible if the microbial diversity is modified.     

Water-sediment niche differentiation in ancient marine lineages of Exiguobacterium endemic to the Cuatro Cienegas Basin

The evolutionary history and ecological differentiation of the genus Exiguobacterium was characterized within natural communities from the Cuatro Cienegas Basin, Mexico. Exiguobacterium comprises both halophilic and alkaliphilic bacteria that are abundant among the aquatic systems of the Cuatro Cienegas Basin. We obtained complete sequences of the 16srRNA gene and partial sequences of four housekeeping genes (citC, rpoB, recA and hsp70) in 183 Exiguobacterium isolates retrieved from distinct aquatic systems. We defined three main phylogroups that are closely related to marine and thermophilic species of the genus. These phylogroups were neither specific to a given aquatic system nor to a particular salinity. Phylogenetic reconstruction indicated the presence of several small clusters within the phylogroups. These clusters consisted of isolates predominantly retrieved from sediment or water. Unifrac and AdaptML analyses confirmed this observation, pointing towards a clear pattern of differentiation linked to either sediment or water habitats. Our results are in line with the concept that niche differentiation is one of the main factors shaping prokaryotic populations and leading to evolutionary divergence.     

Multivariate and Phylogenetic Analyses Assessing the Response of Bacterial Mat Communities from an Ancient Oligotrophic Aquatic Ecosystem to Different Scenarios of Long-Term Environmental Disturbance

Understanding the response of bacterial communities to environmental change is extremely important in predicting the effect of biogeochemical modifications in ecosystem functioning. The Cuatro Cienegas Basin is an ancient oasis in the Mexican Chihuahuan desert that hosts a wide diversity of microbial mats and stromatolites that have survived in extremely oligotrophic pools with nearly constant conditions. However, thus far, the response of these unique microbial communities to long-term environmental disturbances remains unexplored. We therefore studied the compositional stability of these bacterial mat communities by using a replicated (3x) mesocosm experiment: a) Control; b) Fluct: fluctuating temperature; c) 40C: increase to 40 ºC; d) UVplus: artificial increase in UV radiation; and f) UVmin: UV radiation protection. In order to observe the changes in biodiversity, we obtained 16S rRNA gene clone libraries from microbial mats at the end of the experiment (eight months) and analyzed them using multivariate and phylogenetic tools. Sequences were assigned to 13 major lineages, among which Cyanobacteria (38.8%) and Alphaproteobacteria (25.5%) were the most abundant. The less extreme treatments (Control and UVmin) had a more similar composition and distribution of the phylogenetic groups with the natural pools than the most extreme treatments (Fluct, 40C, and UVplus), which showed drastic changes in the community composition and structure, indicating a different community response to each environmental disturbance. An increase in bacterial diversity was found in the UVmin treatment, suggesting that protected environments promote the establishment of complex bacterial communities, while stressful environments reduce diversity and increase the dominance of a few Cyanobacterial OTUs (mainly Leptolyngbya sp) through environmental filtering. Mesocosm experiments using complex bacterial communities, along with multivariate and phylogenetic analyses of molecular data, can assist in addressing questions about bacterial responses to long-term environmental stress.     

Response of Aquatic Leaf Associated Microbial Communities to Elevated Leachate DOC: A Microcosm Study

In Central Europe climate change will increase summer droughts, which cause both, premature leaf fall and fragmentation of small streams during summer and early autumn. As a consequence dissolved organic carbon (DOC) leached from leaves will be dispersed into pools with long water residence time. A microcosm experiment was performed to test the effect of high concentrations of leachate DOC and the relative importance of labile and refractory leachate compounds on leaf associated microbial parameters. In microcosms leaf discs colonized in a stream were exposed to high concentrations of either leaf leachate, glucose or tannic acid. Leaf associated respiration, fungal sporulation, leaf mass loss and fungal biomass (ergosterol) were measured during a 3 weeks experimental period and compared to control without DOC amendment. The results imply that depending on source and composition elevated leachate DOC may have variable effects on microbial mediated litter decomposition. Our findings suggest reduced microbial decomposition rates in pools of fragmented streams receiving premature leaf fall. (© 2007 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Study of the Response of a Biofilm Bacterial Community to UV Radiation

We have developed a bioluminescent whole-cell biosensor that can be incorporated into biofilm ecosystems. RM4440 is a Pseudomonas aeruginosa FRD1 derivative that carries a plasmid-based recA-luxCDABE fusion. We immobilized RM4440 in an alginate matrix to simulate a biofilm, and we studied its response to UV radiation damage. The biofilm showed a protective property by physical shielding against UV C, UV B, and UV A. Absorption of UV light by the alginate matrix translated into a higher survival rate than observed with planktonic cells at similar input fluences. UV A was shown to be effectively blocked by the biofilm matrix and to have no detectable effects on cells contained in the biofilm. However, in the presence of photosensitizers (i.e., psoralen), UV A was effective in inducing light production and cell death. RM4440 has proved to be a useful tool to study microbial communities in a noninvasive manner.     

A new genus from Mexico: Dendrosida (Malvaceae)

Dendrosida, here described as new, comprises three taxa:D. batesii Fryxell,D. sharpiana (Miranda) Fryxell ssp.sharpiana, andD. sharpiana ssp.occidentalis Fryxell. The genus is interpreted as a primitive representative of the tribe Malveae, and its relationship to other genera of theAbutilon alliance is discussed. An analysis of mericarp morphology in relation to seed dissemination mechanisms indicates that theAbutilon alliance may be divided into an Abutiloid and a Sidoid group.Dendrosida is included in the latter.     

In-Situ Quantification of the Interfacial Rheological Response of Bacterial Biofilms to Environmental Stimuli

Understanding the numerous factors that can affect biofilm formation and stability remain poorly understood. One of the major limitations is the accurate measurement of biofilm stability and cohesiveness in real-time when exposed to changing environmental conditions. Here we present a novel method to measure biofilm strength: interfacial rheology. By culturing a range of bacterial biofilms on an air-liquid interface we were able to measure their viscoelastic growth profile during and after biofilm formation and subsequently alter growth conditions by adding surfactants or changing the nutrient composition of the growth medium. We found that different bacterial species had unique viscoelastic growth profiles, which was also highly dependent on the growth media used. We also found that we could reduce biofilm formation by the addition of surfactants or changing the pH, thereby altering the viscoelastic properties of the biofilm. Using this technique we were able to monitor changes in viscosity, elasticity and surface tension online, under constant and varying environmental conditions, thereby providing a complementary method to better understand the dynamics of both biofilm formation and dispersal.     

Shift of Bacterial Community Structures in Sediments From the Changjiang (Yangtze River) Estuary to the East China Sea Linked to Environmental Gradients

Abstract

The Changjiang estuary and its adjacent East China Sea (ECS) have been considered as one of the most dynamic areas significantly contributing to elemental exchanges globally. The purpose of this study was to understand the alteration of microbial consortia at the interface of riverine and coastal environments in relation to environmental variations as well as their roles in biogeochemical cycling at this dynamic region. We sampled surface sediment samples at 4 stations from the estuary to coastal regions of the ECS. Along with collections of physicochemical parameters, we sequenced bacterial 16S rRNA genes of clones from each sample. Results showed a distinct transition of bacterial community from typical freshwater sediment phyla (e.g., Betaproteobacteria and Firmicutes) to those commonly inhabited in saline environments (e.g., Deltaproteobacteria and Gammaproteobacteria). The bacterial group at the transition zone characterized by high accumulation of organic matters and intense mixing of riverine and coastal waters was most diverse. Bacterial community structures at two ECS stations showed a similar pattern but contained different dominant taxa, shifting from Deltaproteobacteria-affiliated sulfate-reducing bacteria at the station closer to the shore to Gammaproteobacteria-affiliated nitrate-reducing bacteria further offshore. It suggested that the sedimentary bacterial community structure was related to salinity, sediment type, and substrate availability and composition.     

Integrating Human Health and Environmental Health into the DPSIR Framework: A Tool to Identify Research Opportunities for Sustainable and Healthy Communities

The U.S. Environmental Protection Agency has recently realigned its research enterprise around the concept of sustainability. Scientists from across multiple disciplines have a role to play in contributing the information, methods, and tools needed to more fully understand the long-term impacts of decisions on the social and economic sustainability of communities. Success will depend on a shift in thinking to integrate, organize, and prioritize research within a systems context. We used the Driving forces–Pressures–State–Impact–Response (DPSIR) framework as a basis for integrating social, cultural, and economic aspects of environmental and human health into a single framework. To make the framework broadly applicable to sustainability research planning, we provide a hierarchical system of DPSIR keywords and guidelines for use as a communication tool. The applicability of the integrated framework was first tested on a public health issue (asthma disparities) for purposes of discussion. We then applied the framework at a science planning meeting to identify opportunities for sustainable and healthy communities research. We conclude that an integrated systems framework has many potential roles in science planning, including identifying key issues, visualizing interactions within the system, identifying research gaps, organizing information, developing computational models, and identifying indicators.     

Philactis fayi (Compositae) : A new species from Mexico

The new species is the fourth member of the genus. Morphologically, it is most closely allied toP. liebmannii, but there are ample qualitative and quantitative differences between them. The chromosome numbers ofP. liebmannii andP. nelsonii are 2n = 56 whileP. zinnioides is 2n = 84.Philactis fayi is 2n = 28 and is considered to represent the diploid complement that was probably involved in the production of the other species through hybridization and chromosome doubling.     

A new geocarpic genus from Mexico: Apatzingania (Cucurbitaceae)

Apatzingania, described here as new, is represented by one species:A. arachoidea Dieterle. The position of the genus in the family is discussed, particularly its relationship toBrandegea, Vaseyanthus, andEchinopepon.     

Metastevia (Compositae: Eupatorieae): A new genus from Mexico

A new genus and species from Mexico,Metastevia hintonii, is described. The genus, considered to be closely related to and derived fromStevia, differs in seven morphological features from all known species ofStevia. The reasons for recognizing the new genus are discussed in detail.     

Blubber Cortisol: A Potential Tool for Assessing Stress Response in Free-Ranging Dolphins without Effects due to Sampling

When paired with dart biopsying, quantifying cortisol in blubber tissue may provide an index of relative stress levels (i.e., activation of the hypothalamus-pituitary-adrenal axis) in free-ranging cetacean populations while minimizing the effects of the act of sampling. To validate this approach, cortisol was extracted from blubber samples collected from beach-stranded and bycaught short-beaked common dolphins using a modified blubber steroid isolation technique and measured via commercially available enzyme immunoassays. The measurements exhibited appropriate quality characteristics when analyzed via a bootstraped stepwise parallelism analysis (observed/expected = 1.03, 95%CI: 99.6 – 1.08) and showed no evidence of matrix interference with increasing sample size across typical biopsy tissue masses (75–150mg; r² = 0.012, p = 0.78, slope = 0.022ng_{cortisol deviation}/ul_{tissue extract added}). The relationships between blubber cortisol and eight potential cofactors namely, 1) fatality type (e.g., stranded or bycaught), 2) specimen condition (state of decomposition), 3) total body length, 4) sex, 5) sexual maturity state, 6) pregnancy status, 7) lactation state, and 8) adrenal mass, were assessed using a Bayesian generalized linear model averaging technique. Fatality type was the only factor correlated with blubber cortisol, and the magnitude of the effect size was substantial: beach-stranded individuals had on average 6.1-fold higher cortisol levels than those of bycaught individuals. Because of the difference in conditions surrounding these two fatality types, we interpret this relationship as evidence that blubber cortisol is indicative of stress response. We found no evidence of seasonal variation or a relationship between cortisol and the remaining cofactors.     

Influence of Salinity Concentration on Aquatic Insect Community Structure: A Mesocosm Experiment in the Dead Sea Basin Region

Salinity varies considerably among temporary pools in the Dead Sea Basin, Israel. We experimentally assessed the effects of four salinity levels (0, 10, 20 and 30 g NaCl per liter) on the aquatic insect community in this basin in an artificial pool experiment. Each salinity level was randomly assigned to six pools (total=24 pools). Salinity did not affect total insect abundance but strongly affected abundance and distributions of different species, and consequently, community structure. Of 13 taxa colonizing the pools, 12 were Diptera including 10 mosquito species. Five taxa were sufficiently common to assess abundance in relation to salinity. Polypedilum nubiferum Skuse (Diptera: Chironomidae) was largely salinity intolerant being abundant only in the freshwater. Ephydra flavipes Macquart (Diptera: Ephydridae) was most abundant at the highest salinity level and was rare in freshwater. Ochlerotatus caspius Pallas (Diptera: Culicidae) abundance tended to be highest at 10 g/l and lowest at 30 g/l although the differences were not statistically significant. Anopheles multicolor Cambouliu (Diptera: Culicidae) was relatively euryhaline although numbers dropped significantly at the highest salinity. Cleon dipterum Linnaeus (Baetidae: Ephemeroptera) was also euryhaline and showed no significant differences in abundance across salinities. For the mosquito species, we also estimated survival to pupation. Survival to pupation was significantly lower for O. caspius in freshwater, but was not statistically significantly different across salinities for A.␣multicolor. Species diversity was highest at the two lowest salinities tested and then dropped with increasing salinity. Evenness was not significantly different across salinities. Community similarity generally decreased with increasing salinity differences though dissimilarity was greatest when comparing freshwater to other salinities. Thus, regional diversity is likely increased when there is a range of salinities among pools.     

A Multidimensional Functional Trait Approach Reveals the Imprint of Environmental Stress in Mediterranean Woody Communities

Water availability is one of the most important factors determining species distribution, plant community structure and ecosystem functioning. We explore how the functional structure of Mediterranean woody plant communities varies along a regional gradient of aridity in the Andalusian region (south Spain). We question whether communities located in more arid sites show more similarity in their functional structure when compared with communities located in wetter sites or whether, instead, there is divergence in their functional spaces. We selected five aridity zones (three sampling sites per zone) and measured 13 traits of different functional dimensions (including leaf, stem and root traits) in 74 woody plant species. We quantified functional space differences using the n-dimensional niche space approach (hypervolume). We found a larger functional space for the wetter communities compared with the more arid communities, which showed greater overlap of the trait space occupation. Our results indicate that aridity acts as a key abiotic filter affecting various metrics of the community trait structure, in accordance with the plant economics spectrum. We have also documented consistent variation in the functional space, supporting lower functional diversity under more harsh climatic conditions. The trend of functional space variation along the aridity gradient was different when considering traits from only one plant organ. Thus, the filtering process driving the functional structure of the communities studied here largely depends on the trait axis considered; for example, the root dimension showed considerable variation in wet environments, whereas the leaf dimension exhibited a larger functional space in the drier habitats.