Using Phylogenetic,Functional and Trait Diversity to Understand Patterns of Plant Community Productivity

Background

Two decades of research showing that increasing plant diversity results in greater community productivity has been predicated on greater functional diversity allowing access to more of the total available resources. Thus, understanding phenotypic attributes that allow species to partition resources is fundamentally important to explaining diversity-productivity relationships.

Methodology/Principal Findings

Here we use data from a long-term experiment (Cedar Creek, MN) and compare the extent to which productivity is explained by seven types of community metrics of functional variation: 1) species richness, 2) variation in 10 individual traits, 3) functional group richness, 4) a distance-based measure of functional diversity, 5) a hierarchical multivariate clustering method, 6) a nonmetric multidimensional scaling approach, and 7) a phylogenetic diversity measure, summing phylogenetic branch lengths connecting community members together and may be a surrogate for ecological differences. Although most of these diversity measures provided significant explanations of variation in productivity, the presence of a nitrogen fixer and phylogenetic diversity were the two best explanatory variables. Further, a statistical model that included the presence of a nitrogen fixer, seed weight and phylogenetic diversity was a better explanation of community productivity than other models.

Conclusions

Evolutionary relationships among species appear to explain patterns of grassland productivity. Further, these results reveal that functional differences among species involve a complex suite of traits and that perhaps phylogenetic relationships provide a better measure of the diversity among species that contributes to productivity than individual or small groups of traits.     

广西流星天坑植物群落结构与多样性

以广西乐业流星天坑为研究对象,在流星天坑腰部与底部设置样地,采用样方法调查冠层树种及林下植物群落;并用数量生态学的方法分析了天坑植物群落的组成、结构与物种多样性,探讨其生境关联。结果表明:(1)在天坑调查的样地中,胸径大于10cm的冠层树种个体60株,隶属于13科、17属、18种,个体密度约为188株/hm2。林下植物种群共记录到94株个体,隶属于28科、38属、43种,个体密度为23 500株/hm2。群落物种多样性较丰富,Shannon-Wiener多样性指数和均匀度指数均较高;冠层树种的科属多样性很高,体现出群落组成的古老和隔离性质。(2)樟科是流星天坑植物群落的优势科,在群落冠层包含4个种14株个体,在林下包含3个种,7株个体,其中2种与群落冠层共有;群落的林下层含物种数较多的科包括大戟科(4种)、菊科(3种)、凤尾蕨科(3种)、鳞毛蕨科(3种),但天坑植物群落中种群水平的优势现象不明显。(3)林下植物包含了各种生长型,以灌木数量最多,禾草类植物数量最少,乔木的幼苗也较少,体现出天坑的生境提供了较丰富的资源生态位,同时也表明乔木的幼苗更新不良。(4)流星天坑大树数量比例高,在样地中记录到的60株个体中,最小胸径为17.0cm,最大胸径104.0cm,胸径30cm的大树共34株,占全部立木比例56.6%,体现出天坑森林群落的原始性并且未受到干扰破坏。(5)双向指示种分析表明,广西乐业天坑林下植物对生境的响应更为敏感,但无论冠层还是林下层其现状分布并不能完全把坑腰和坑底两种生境分离。该研究结果为深入开展天坑这种特殊生境下植物种群以及群落的发生、演替和生态适应性的研究提供了基础数据及理论依据。     

山西霍山植物群落谱系结构的空间格局

以山西霍山七里峪植物群落为研究对象,用R语言分别对9个海拔梯度(1 200~2 000m)、5个空间尺度(100、400、900、1 600和2 500m2)和5个空间尺度下划分的6个径级(Ⅰ.DBH5cm、Ⅱ.5cm≤DBH10cm、Ⅲ.10cm≤DBH15cm、Ⅳ.15cm≤DBH20cm、Ⅴ.20cm≤DBH25cm、Ⅵ.DBH≥25cm)的植物群落谱系结构及其在不同研究方向上的变化规律进行分析,探讨其群落构建成因。结果显示:(1)在所有海拔梯度上,霍山七里峪植物群落都表现出一定的谱系结构,在不同海拔梯度上,群落谱系结构表现出一定的差异性,且在中低海拔群落的谱系结构是发散的,在较高海拔群落的谱系结构是聚集的。(2)5个空间尺度下研究区植物群落都具有谱系结构,且随着空间尺度的增加,谱系聚集程度越来越大。(3)不同径级下的群落都有一定的谱系结构,随着径级的增大,谱系聚集程度逐渐降低,趋向于发散结构,但在Ⅵ径级时群落聚集程度较Ⅳ、Ⅴ径级的高。研究表明,山西霍山七里峪植物群落在不同海拔梯度、不同空间尺度和不同径级下都表现出显著的谱系结构,与中性理论所预测的谱系随机并不相符,证明生态位理论在霍山植物群落构建过程中的作用更加重要。     

Determinants of Plant Community Assembly in a Mosaic of Landscape Units in Central Amazonia: Ecological and Phylogenetic Perspectives

The Amazon harbours one of the richest ecosystems on Earth. Such diversity is likely to be promoted by plant specialization, associated with the occurrence of a mosaic of landscape units. Here, we integrate ecological and phylogenetic data at different spatial scales to assess the importance of habitat specialization in driving compositional and phylogenetic variation across the Amazonian forest. To do so, we evaluated patterns of floristic dissimilarity and phylogenetic turnover, habitat association and phylogenetic structure in three different landscape units occurring in terra firme (Hilly and Terrace) and flooded forests (Igapó). We established two 1-ha tree plots in each of these landscape units at the Caparú Biological Station, SW Colombia, and measured edaphic, topographic and light variables. At large spatial scales, terra firme forests exhibited higher levels of species diversity and phylodiversity than flooded forests. These two types of forests showed conspicuous differences in species and phylogenetic composition, suggesting that environmental sorting due to flood is important, and can go beyond the species level. At a local level, landscape units showed floristic divergence, driven both by geographical distance and by edaphic specialization. In terms of phylogenetic structure, Igapó forests showed phylogenetic clustering, whereas Hilly and Terrace forests showed phylogenetic evenness. Within plots, however, local communities did not show any particular trend. Overall, our findings suggest that flooded forests, characterized by stressful environments, impose limits to species occurrence, whereas terra firme forests, more environmentally heterogeneous, are likely to provide a wider range of ecological conditions and therefore to bear higher diversity. Thus, Amazonia should be considered as a mosaic of landscape units, where the strength of habitat association depends upon their environmental properties.     

后河自然保护区珍稀植物群落谱系结构的时空变化

群落中所有物种对的亲缘关系程度构成群落的谱系结构。研究群落的谱系结构可以有效地揭示环境过滤、竞争排斥、中性过程三大生态过程对群落构建的相对重要性。本文以湖北后河自然保护区1hm。固定样地的珍稀植物群落为研究对象,分别研究了5m×5m、10m×10m、20m×20m、30m×30m、40m×40m、50m×50m6个空间尺度和在10m×10m、20m×20m、30m×30m、40m×40m、50m×50m5个空间尺度下5cm≤DBH〈10cm、10cm≤DBH〈15cm、15cm≤DBH〈20cm、DBH≥20cm4个径级对亚热带常绿落叶阔叶混交林群落谱系结构的影响。结果发现：随着空间尺度的增加,谱系结构逐渐趋向聚集。随着径级的增大,群落谱系聚集程度越来越小。但当DBHI〉20cm时,群落谱系聚集度较高。在25m。的尺度上群落谱系结构表现为随机,而在100m^2及更大的尺度上群落谱系结构都表现为聚集,说明在亚热带常绿阔叶落叶混交林的群落构建过程中,小尺度上中性过程可能起主导作用,而大尺度上生态位过程可能更重要。     

A Paleoecological Assessment of Phragmites australis in New England Tidal Marshes: Changes in Plant Community Structure During the Last Few Millennia

Although Phragmites has been an upper border tidal marsh species for thousands of years, it is only recently (within the last century or so) that the distribution of this plant within the coastal marsh community has become prominent. Prior to approximately 100 years ago, Phragmites was an upper border/brackish marsh co-dominant in many marsh systems. Occurrence of this species varied between associations of sedges, Typha, forbs and a variety of woody shrubs. Paleoreconstructions rarely show the presence of a Phragmites monoculture or early associations with salt marsh species. However, since the turn of this century (and perhaps as early as the middle of the last century) the distribution of Phragmites has changed substantially. Today, this plant often forms dense monocultures and is commonly found in association with Spartina grasses. The results of this paleoecological investigation show that the changes that have been observed in Phragmites communities during the last 100 years are not part of the long-term cycle of development in these systems and are new to the landscape.     

Geographic and Environmental Sources of Variation in Lake Bacterial Community Composition

This study used a genetic fingerprinting technique (automated ribosomal intergenic spacer analysis [ARISA]) to characterize microbial communities from a culture-independent perspective and to identify those environmental factors that influence the diversity of bacterial assemblages in Wisconsin lakes. The relationships between bacterial community composition and 11 environmental variables for a suite of 30 lakes from northern and southern Wisconsin were explored by canonical correspondence analysis (CCA). In addition, the study assessed the influences of ARISA fragment detection threshold (sensitivity) and the quantitative, semiquantitative, and binary (presence-absence) use of ARISA data. It was determined that the sensitivity of ARISA was influential only when presence-absence-transformed data were used. The outcomes of analyses depended somewhat on the data transformation applied to ARISA data, but there were some features common to all of the CCA models. These commonalities indicated that differences in bacterial communities were best explained by regional (i.e., northern versus southern Wisconsin lakes) and landscape level (i.e., seepage lakes versus drainage lakes) factors. ARISA profiles from May samples were consistently different from those collected in other months. In addition, communities varied along gradients of pH and water clarity (Secchi depth) both within and among regions. The results demonstrate that environmental, temporal, regional, and landscape level features interact to determine the makeup of bacterial assemblages in northern temperate lakes.     

Phosphate Addition and Plant Species Alters Microbial Community Structure in Acidic Upland Grassland Soil

Agricultural improvement (addition of fertilizers, liming) of seminatural acidic grasslands across Ireland and the UK has resulted in significant shifts in floristic composition, soil chemistry, and microbial community structure. Although several factors have been proposed as responsible for driving shifts in microbial communities, the exact causes of such changes are not well defined. Phosphate was added to grassland microcosms to investigate the effect on fungal and bacterial communities. Plant species typical of unimproved grasslands (Agrostis capillaris, Festuca ovina) and agriculturally improved grasslands (Lolium perenne) were grown, and phosphate was added 25 days after seed germination, with harvesting after a further 50 days. Phosphate addition significantly increased root biomass (p < 0.001) and shoot biomass (p < 0.05), soil pH (by 0.1 U), and microbial activity (by 5.33 mg triphenylformazan [TPF] g⁻¹ soil; p < 0.001). A slight decrease (by 0.257 mg biomass-C g⁻¹ soil; p < 0.05) in microbial biomass after phosphate addition was found. The presence of plant species significantly decreased soil pH (p < 0.05; by up to 0.2 U) and increased microbial activity (by up to 6.02 mg TPF g⁻¹ soil) but had no significant effect on microbial biomass. Microbial communities were profiled using automated ribosomal intergenic spacer analysis. Multidimensional scaling plots and canonical correspondence analysis revealed that phosphate addition and its interactions with upland grassland plant species resulted in considerable changes in the fungal and bacterial communities of upland soil. The fungal community structure was significantly affected by both phosphate (R = 0.948) and plant species (R = 0.857), and the bacterial community structure was also significantly affected by phosphate (R = 0.758) and plant species (R = 0.753). Differences in microbial community structure following P addition were also revealed by similarity percentage analysis. These data suggest that phosphate application may be an important contributor to microbial community structural change during agricultural management of upland grasslands.     

Saltwater Intrusion Modifies Microbial Community Structure and Decreases Denitrification in Tidal Freshwater Marshes

Ecosystems - Environmental changes can alter the interactions between biotic and abiotic ecosystem components in tidal wetlands and therefore impact important ecosystem functions. The objective of...     

福建植物分布新记录4种

在第四次全国中药资源普查中,作者在福建省武夷山市、南靖县、将乐县、尤溪县等地发现福建省植物分布新记录4种：笔直石松[Dendrolycopodium vertical (L. B. Zhang) L. B. Zhang & X. M. Zhou]、史氏挖耳草(Utricularia smithiana Wight)、湘桂栝楼(Trichosanthes hylonoma Hand.-Mazz.)、南投万寿竹(Disporum sessile var. intermedium Y. H. Tseng & C. T. Chao)。凭证标本存放于福建中医药大学中药资源标本馆(FJTCM)。     

柴达木盆地荒漠灌丛群落谱系结构研究

谱系信息是群落生态学和保育生物学研究的主要内容之一。为探究柴达木盆地荒漠灌丛群落谱系结构及其与环境因子的关系,该研究以柴达木盆地荒漠灌丛为对象,基于群落中物种存在与否的物种组成数据,使用R语言中picante软件包计算了灌丛群落谱系多样性指数和谱系结构指数,并且分析了谱系结构指数与年均温度、年均降水以及土壤含水量之间的关系,以揭示柴达木盆地灌丛群落物种之间的亲缘关系和群落生物多样性维持机制。结果表明:(1)柴达木盆地灌丛群落谱系结构与土壤含水量之间存在极显著相关性(P=2.77×10-6),随着土壤含水量的增加,群落谱系结构聚集程度逐渐降低,表现出生境过滤作用逐步减弱,生物间相互作用逐渐加强的变化趋势。(2)群落谱系结构与年均温度、年均降水之间无显著相关性。(3)典型荒漠生境灌丛和河谷(河漫滩)生境灌丛群落的谱系结构差异显著(P0.05),整体上分别表现为谱系聚集状态和谱系发散状态;河谷(河漫滩)生境灌丛群落的谱系多样性显著高于典型荒漠生境灌丛(P0.05)。(4)将群落谱系信息应用在生物多样性保护实践中,发现河谷(河漫滩)生境灌丛群落较典型荒漠生境的灌丛群落可能具有更高的保护价值。研究认为,将群落谱系研究与保育生物学理论结合将会使生物多样性保护策略更加科学有效。     

Salt marsh foraminifera from the Great Marshes, Massachusetts: environmental controls

By using sites in the Great Marshes at Barnstable (Massachusetts, USA) this study examines the effects of a set of environmental parameters on the foraminiferal distribution. The studied parameters are: elevation above mean high water; salinity of the porewater; various sediment characteristics; vegetation; and food source. Relations between the environmental parameters and foraminiferal properties (frequencies, densities and diversities) are quantified with correlation coefficients. For the first time Siphotrochammina lobata and Balticammina pseudomacrescens are documented in the New England region.

The following species show a significant correlation with one or more of the studied parameters and are designated as key-species: Haplophragmoides manilaensis, Jadammina macrescens, Balticammina pseudomacrescens, Miliammina fusca and Tiphotrocha comprimata. Based on cluster analysis and the presence, absence or dominance of the key-species characteristic associations are distinguished. The distribution of three associations is indicative of specific marsh environments: the marsh fringe, the middle marsh and the marsh edge. These three marsh units are separated by their own salinity regime, flooding and sediment characteristics.

The marsh fringe is typified by the H. manilaensis Association and experiences freshwater input (seepage, surface runoff and rainwater) and only slight marine influence, resulting in low salinity values (2.5–20‰). The width of the marsh fringe is variable, dependent on the amount of seepage which in turn is controlled by the permeability of the basement and the peat. The J. macrescens Association characterizes the middle marsh where salinities are controlled by infiltration of sea- and rainwater and by evaporation. Salinity values are higher than 20‰, while temporarily salinity can reach extreme high values during periods without flooding and high evaporation rates (e.g., 44‰). The fully marine M. fusca Association occupies the daily flooded marsh edge where the salinities have the same values as Cape Cod bay water (ca. 28‰).

Unlike many other salt marshes the distribution of foraminiferal assemblages in the Great Marshes does not show a vertical zonation with respect to mean high water. This shows that a worldwide applicable model for paleoenvironmental studies in salt marshes based on foraminifera is not feasible. Each salt marsh has its own characteristics. Regional factors such as climate play an important role in the salinity regime, while the local upland characteristics determine if seepage takes place. Thus each marsh has its own foraminiferal fingerprint showing the opportunistic behaviour of the salt marsh agglutinants. A surface study is an indispensable first step in assessing the value of foraminifera as paleo-ecological indicators.     

Retrotransposon Sequence Variation in Four Asexual Plant Species

Transposable elements (TEs) can be viewed as genetic parasites that persist in populations due to their capacity for increase in copy number and the inefficacy of selection against them. A corollary of this hypothesis is that TEs are more likely to spread within sexual populations and be eliminated or inactivated within asexual populations. While previous work with animals has shown that asexual taxa may contain less TE diversity than sexual taxa, comparable work with plants has been lacking. Here we report the results of a study of Ty1/copia, Ty3/gypsy, and LINE-like retroelement diversity in four asexual plant species. Retroelement-like sequences, with a high degree of conservation both within and between species, were isolated from all four species. The sequences correspond to several previously annotated retroelement subfamilies. They also exhibit a pattern of nucleotide substitution characterized by an excess of synonymous substitutions, suggestive of a history of purifying selection. These findings were compared with retroelement sequence evolution in sexual plant taxa. One likely explanation for the discovery of conserved TE sequences in the genomes of these asexual taxa is simply that asexuality within these taxa evolved relatively recently, such that the loss and breakdown of TEs is not yet detectable through analysis of sequence diversity. This explanation is examined by conducting stochastic simulation of TE evolution and by using published information to infer rough estimates of the ages of asexual taxa. Electronic Supplementary Material Electronic Supplementary material is available for this article at and accessible for authorised users. [Reviewing Editor: Dr. Dmitri Petrov     

四川黄龙沟草本层植物种类组成与数量特征

四川黄龙沟草本植物群落在所调查样方中(N=662)共出现维管植物124种,分属于37科91属,有54个中国特有种:其中兰科植物多达21属33种,中国特有种有12个,新种一个。如此众多的地生兰科植物聚集在面积不到1公里的沟内,而且部分兰科植物种类在沟内形成优势草本群落,这在中国地生兰的分布区域中是不多见的。大多数物种,包括兰科植物在内,出现的频率都较小,并且分布不均匀。黄龙沟兰科植物主要分布在两种生境中,即钙化滩流地和森林中。在这两种生境中微环境条件以及兰科植物的种类组成、数量特征和分布格局的差异都很大。钙化滩流地的兰科植物种类数目和每个样方中包含的兰科植物种类数目都比森林生境中的高。钙化滩流地中发现有30种兰科植物,最为常见的是无苞杓兰、黄花杓兰、西藏杓兰、广布小碟兰、二叶根茎兰和少花鹤顶兰。森林生境中有21种兰科植物分布,其中筒距兰和斑叶兰出现最多,光照强度可能对兰科植物的分布起到重要的决定作用。钙化滩流地中的溪流对建立和维持兰科植物生存所必须的稳定环境条件起到至关重要的作用,如果随意改变水流的方向或减少水流的流量,将给某些兰科植物带来灾难性的后果。     

Interstitial Protozoa and Algae of Louisiana Salt Marshes

SYNOPSIS. The majority of Louisiana salt marshes consists of stagnant pools among a vegetation of Spartina spp. and Distichlis spicata. The sediments constitute a "sulphide biome,'with Eh values reaching to –350 mV. The 200 interstitial ciliate species had definite stratification. Generally, algivores and omnivores occurred in the upper, and bactivores in the lower layers of the sediments. Compaction of particles prevented the flexible and large ciliates from inhabiting the lower layers, while Eh below –200 mV limited the distribution of some species but favored certain bactivores. The pH/Eh range and the abundance of nutrients in the sulfide biome provide habitable conditions for all the major groups of microflora. These, in turn, support nutritionally diverse predatory ciliate populations.     

Mitochondrial DNA Variation Follows a Geographic Pattern in Japanese Beech Species

The amount and distribution of mitochondrial (mt) DNA restriction fragment length polymorphism was determined among individual tree samples of two Japanese beech species, Fagus crenata and F.japonica. Individual plants were collected from 16 F. crenata populations throughout the range of the species, and from three F. japonica populations. We detected enough variation to characterize eleven and three chondriome types in F. crenata and F.japonica, respectively. The grouping of beech chondriome types based upon the cladistic analysis of mtDNA polymorphism allowed us to recognize the apparent geographical patterns of mtDIMA diversity: the resulting three main groups occupied distinct geographic areas. This geographic differentiation is likely to reflect the history of the Japanese beech forests after the last glacial period of the Pleistocene. In addition, the mtDNA polymorphism encountered within F. crenata encompassed all the variation observed in F.japonica. Our result suggests the need for re-evaluation of their phylogenetic relationships.     

Functional Plant Traits and Species Assemblage in Pyrenean Snowbeds

In mid-latitude mountains, snowbeds often consist of small, scattered alpine belt units that host many plants of high biogeographic interest. Because most snowbed species are weak competitors, it is important to study the dissemination and persistence of their seeds to better understand their population dynamics. This study analyzed the snowbed flora of the Central Pyrenees using 11 morpho-functional traits, mostly related to seed function. The seeds of most plants found in snowbeds are small or very small, they have ovoid to elliptical shapes, and have no attributes related to dispersal. When only snowbed specialists (i.e., with a phytosociological optimum in snowbed habitats) are considered, three strategy groups become apparent: i) annuals or pauciennials producing abundant small seeds prone to accumulate in the soil; ii) chamaephytes or hemicryptophytes that produce anemochorous seeds; and iii) other perennials – mainly hemicryptophytes – with no specific seed traits. In the first two groups, the extant populations are maintained either by permanent soil seed banks or by means of vegetative persistence and dispersal. The lack of specific traits in the third group suggests that these plants could be more sensitive to direct competitive exclusion from non-chionophilous species under a changing climatic scenario in which snowbeds tend to disappear.