应用基于适配器连接介导的等位基因特异性扩增法检测LRRK2基因的单核苷酸多态性

目的：应用基于适配器连接介导的等位基因特异性扩增法（Adapter Ligation—mediated Allele-specific Amplification,简称ALM-ASA）技术,检测与帕金森病（PD）发病相关的LRRK2基因中的4个SNP位点（6055G〉A,7153G〉A,4321C〉T和2264C〉T）,探讨该法用于筛查帕金森病相关SNP位点的可行性,研究多个SNP住点同时检测的准确性和可靠性。方法：运用ALM—ASA法原理,改进使用多重PCR法代替单一预扩增法,使用4对引物在单管中预扩增含所待测SNP位点的四段片段,通过酶切、酶连和PCR特异性扩增检测判断SNP的类型。经PCR体外定点突变实验制备的相应位点的突变阳性片段,检验方法的准确性和可靠性。结果：采用该法成功测定了20名PD病人和20名健康中国人的LRRK2基因中最受关注的4个SNP位点的多态性。并随机对其中10分样本的检测结果以测序法检测进行验证,结果完全一致。结论：ALM-ASA法极大提高了PCR反应的特异性,是一种准确、可靠,且费用低廉的SNP筛查方法,可推广应用于临床和实验室进行与PD有关的单核苷酸多态性的筛查检测。     

焦磷酸测序测定SNP的常见问题与解决方法

目的：探讨焦磷酸测序技术对单核苷酸多态性分型因测序图谱中存在的一些典型问题而导致分型结果不准确的解决方法。方法：以VKORC1基因1639 G〉A位点、CYP2C19基因636 G〉A位点及UGT1A1基因TA重复序列（TA）6〉（TA）7的多态性检测为例,分别采用优化PCR条件、改变测序时dNTP的加入顺序以及设立外标校正的方法来解决上述问题,从而提高焦测序对SNP分型的准确性。结果：通过升高PCR退火温度,可以显著提高VKORC1基因的扩增特异性,降低了测序图谱中非特异性信号峰强度;通过优化测序时dNTP的加入顺序,CYP2C19基因636 G〉A位点的准确分型结果可通过观察测序图谱中相关信号峰的有无而简单获得,避免了比较信号峰的相对强度;通过比较待测样本与已知基因型的外标样本的测序图谱来确定待测样本的基因型,提高了对UGT1A1基因TA重复序列（TA）6〉（TA）7多态性的分型准确性。结论：本文针对焦测序在测定SNP时的常见问题所提出的相应解决方法不仅简单、经济有效,而且在临床应用方面具有可靠性。     

三穗鸭DRD4基因多态性及生物信息学分析

本实验以三穗鸭为材料,采用PCR扩增并采用直接测序技术对三穗鸭DRD4基因进行SNP多态位点检测,共筛查出4个SNP位点:exon2-C12406T、exon3-A13144G、intron2-C12777T、intron2-T12789C。其中exon2-C12406T、exon3-A13144G位点突变为同义突变。对DRD4进行生物信息学分析表明,突变前后的等位基因频率估算有差异,但其m RNA二级结构预测,蛋白质二级、三级结构预测分析均无差异。     

猪Pitx2c基因4个SNPs的鉴定及其与肉质性状的关联分析

为研究猪Pitx2c基因与肉质性状的关系,在猪Pitx2c基因中共发现了8个SNPs位点,对其中的4个SNPs位点在4个商业猪种及8个中国地方猪种进行了等位基因频率检测,并在大白×梅山猪F2资源家系中进行了性状关联分析.结果显示,位点c.474C〉T（P〈0.01）及c.636C〉T（P〈0.05）与肉色（MCV1）存在显著或极显著相关;位点c.＊37G〉A及c.＊47G〉A与滴水损失（DLR）、系水力（WHC）及肉色（MCV1）均存在显著相关（P〈0.05）.连锁不平衡分析表明,临近的位点两两之间存在连锁不平衡（LD）.单倍型分析显示,存在两种主要单倍型,并且两拷贝的单倍型-CCGG-有利于肉质的改善.     

妊娠相关蛋白A、过氧化物酶体增殖物激活受体-γ基因多态性与子痫前期的易感性和妊娠结局的关系研究

摘要 目的：探讨妊娠相关蛋白A（PAPP-A）、过氧化物酶体增殖物激活受体-γ（PPAR-γ）基因多态性与子痫前期（PE）的易感性和妊娠结局的关系。方法：选取2018年7月至2021年6月石家庄妇幼保健院收治的125例PE患者（PE组）及125例本院同期产检健康孕妇（对照组），统计并对比两组临床结局，根据PE患者妊娠结局的不同分为不良组和良好组。检测所有研究对象外周血脱氧核糖核酸（DNA）样本中PAPP-A、PPAR-γ基因单核苷酸多态性（SNP）位点，并对比PE组与对照组、良好组与不良组SNP位点基因型及等位基因频率，并分析其与PE及PE不良妊娠结局发生的关系。结果：PE组与对照组PPAR-γ基因rs10865710、rs4684847位点及PAPP-A基因rs7020782位点的基因型分布比较有统计学差异，且PE组PPAR-γ基因rs10865710等位基因G、rs4684847等位基因T及PAPP-A基因rs7020782等位基因C频率高于对照组（P＜0.05）；二分类Logistic回归分析显示，PPAR-γ基因rs10865710位点GG基因型（OR=2.641）及G等位基因（OR=1.641）、PPAR-γ基因rs4684847位点CT基因型（OR=3.084）及T等位基因（OR=2.985）、PAPP-A基因rs7020782位点CC基因型（OR=2.104）及C等位基因（OR=1.875）均是PE发生的危险因素（P＜0.05）。PE组总不良妊娠结局发生率为33.60%，显著高于对照组的5.60%（P＜0.05）。不良组与良好组PPAR-γ基因rs10865710、rs4684847位点及PAPP-A基因rs7020782位点的基因型分布比较有统计学差异，且不良组PPAR-γ基因rs10865710等位基因G、rs4684847等位基因T、PAPP-A基因rs7020782等位基因C频率高于良好组（P＜0.05）；二分类Logistic回归分析显示，PPAR-γ基因rs10865710位点GG基因型（OR=2.446）及G等位基因（OR=1.503）、PPAR-γ基因rs4684847位点CT基因型（OR=2.225）及T等位基因（OR=2.013）、PAPP-A基因rs7020782位点CC基因型（OR=2.005）及C等位基因（OR=1.950）均是不良妊娠结局的危险因素（P＜0.05）。结论：PPAR-γ基因rs10865710、rs4684847位点及PAPP-A基因rs7020782位点可能与PE易感性及PE不良妊娠结局的发生有关，检测两个基因的SNP位点可能有助于评估PE及其不良妊娠结局的发生风险。     

TNFa-308基因启动子多态性与新疆维吾尔族人乙型肝炎易感性的相关性研究

目的：研究TNF-α基因单核苷酸多态性（SNP）308G—A位点与新疆地区维吾尔族人乙型肝炎之间的关系。方法：以聚合酶链式反应－限制性内切酶长度多态性（PCR-RFLP）技术,对120例乙肝患者和120例正常对照者TNF—α基因SNP308多态性位点进行基因分型。结果：SNP308多态性位点G／G基因型和G／A基因型频率在病例组为77％和23％,正常对照组为88％和12％,2组基因型和等位基因频率分布差异有显著性（p〈0．05）。结论：TNF—α基因启动子308多态性位点与新疆维吾尔族人乙肝有明显相关性。     

眼皮肤白化病分型及珊基因新突变的鉴定

目的了解我国眼皮肤白化病（oculocutaneous albinism,OCA）的分型和相关基因突变类型,探讨新突变可能的分子致病机制。方法应用PCR方法扩增TYR基因,经DNA序列测定检出突变,采用错配引物PCR进行新突变的群体筛查,结合生物信息学方法探讨一种新突变的致病性和可能的分子致病机制。结果10名患者中有5人存在2个突变TYR等位基因,共计8种突变类型,其中c．71G〉A（C24Y）和c．841G〉T（E281X）是OCA1A致病性新突变;C24极可能参与二硫键形成,C24Y将导致酪氨酸酶肽链内此二硫键消失,进而引起蛋白空间构象变化和功能异常而致病。结论从基因水平初步了解了我国OCA1所占的比例,探讨了TYR基因C24Y的致病性并初步阐明了其致病的分子机制。本结果丰富了人类TYR基因突变类型,为我国OCA分型诊断、产前基因诊断和遗传咨询等积累了有价值的数据资料。     

脑源性神经营养因子基因多态性与注意缺陷多动障碍的关联性研究

目的：探讨脑源性神经营养因子（Brain-derivedneurotrophicfactor,BDNF）G196A、C270T及Val66Met3个单核苷酸多态性（SNP）位点与注意缺陷多动障碍（ADHD）的关系。方法：选取无亲缘关系的ADHD患者共114例,健康对照共96例。采用聚合酶链反应-限制性片段长度多态性（PCR-RFLP）技术检测G196A、C270T和Val66Met3个多态性位点的多态性,采用HaploView4.0及SPSS13.0软件进行连锁不平衡分析并比较两组基因型分布和等位基因频率。结果：BDNF三个多态性位点基因型及等位基因频率分布均符合Hardy-Weinberg定律。ADHD组G196A和C270T多态性位点分布与正常对照组比较差异无统计学意义,而BDNF基因Val66Met位点的基因型及等位基因频率分布在ADHD组与对照组存在显著性差异（p〈0.05）,ADHD组Val66Met位点的等位基因G（Val）频率显著高于正常对照组。结论：BDNF基因Val66Met多态性可能与ADHD发病有关,携带有Val66Met多态性位点G等位基因的个体可能更容易产生ADHD。     

江西地区畲族人群pcsk9基因变异的SNaPshot分析

目的 研究江西地区畲族人群pcsk9基因SNP位点的变异,为开展冠心病风险研究提供可借鉴的资料.方法 通过SNaPshot法对84例畲族人外周血DNA pcsk9基因外显子7个SNP位点进行分型,ABI 3730XL扫描分型结果.结果 7个SNP位点中,仅rs505151A/G位点检测到基因变异,其G基因的频率为0.036.结论 江西地区畲族人群pcsk9基因7个SNP位点的基因型频率和等位基因频率与国内外其他民族间均存在一定差异,提示畲族人群可能具有独特的冠心病风险标记位点及变异特征.本研究为开展畲族人群pcsk9基因的冠心病风险关联性研究提供了参考依据.     

高保真酶特异性检测大鼠SNP基因型新方法

目的应用高保真酶（Pfu）和3’末端修饰引物在单管双向等位基因特异性扩增（SB-ASA）中区分SNP基因型,建立高保真酶特异性检测SNP基因型的新方法。方法选取近交系大鼠SNP位点,以RS8149053为例,设计两个外部引物和两个等位基因特异性引物,四引物3’末端进行硫代磷酸化修饰,应用高保真聚合酶（Pfu）进行特异性扩增,扩增结果测序验证其可靠性。结果在RS8149053 SNP位点（C/T）上,等位基因型CC扩增出179 bp目的片段,基因型TT扩增出597 bp目的片段,基因型不同则扩增出分子量不同的片段,目的条带测序结果与Rat Genome Database数据库基因型结果一致,高保真酶扩增结果稳定且特异性强。结论高保真酶等位基因特异性扩增技术能有效降低假阳性率,是一种快速、特异的SNP基因分型新方法。     

Detection of mutations by fill-in ligation reaction with enzyme-linked immunosorbent assay for rapid medical diagnosis

Several approaches for parallel genotyping have been developed with increasingly available information on DNA variation. However, these methods require either complex laboratory procedures or expensive instrumentation. None of these procedures is readily performed in local clinical laboratories. In this study, we developed a flexible genotyping method involving fill-in ligation reaction with enzyme-linked immunosorbent assay successfully applied to detect important single-nucleotide polymorphisms (SNPs) for EGFR c.2573T?>?G (L858R), EGFR c.2582T?>?A (L861Q), and EGFR c.2155G?>?T (G719C). This assay exhibited excellent specificity, with a sensitivity as low as 0.5%. Eight out of 62 clinical samples were identified as heterozygotes for the SNP site of L858R, whereas only two samples were identified as heterozygotes by direct sequencing. The developed method enabled accurate identification of SNP in a simple and cost-effective manner adapted to routine analysis.     

猕猴血清B病毒抗体三种检测方法的比较

目的对B病毒（B virus）抗体检测的3种方法进行比较,寻求准确、可靠、经济的检疫方法。方法对以HSV-1为抗原的玻片酶免疫法、B病毒为抗原的玻片酶法（EIA）和酶联免疫吸附法（ELISA）的猕猴血清B病毒抗体检测结果进行比较。结果HSV-1为抗原的EIA与B病毒为抗原的EIA、ELISA检测结果符合率分别为97.7%和95.5%。结论HSV-1为抗原EIA的检测结果与B病毒抗原EIA和ELISA的检测结果一致性较好,可以做为初筛手段,且检测效果较好,投入资金相对最低,达到节约成本的目的。     

High throughput automated allele frequency estimation by pyrosequencing

Pyrosequencing is a DNA sequencing method based on the principle of sequencing-by-synthesis and pyrophosphate detection through a series of enzymatic reactions. This bioluminometric, real-time DNA sequencing technique offers unique applications that are cost-effective and user-friendly. In this study, we have combined a number of methods to develop an accurate, robust and cost efficient method to determine allele frequencies in large populations for association studies. The assay offers the advantage of minimal systemic sampling errors, uses a general biotin amplification approach, and replaces dTTP for dATP-apha-thio to avoid non-uniform higher peaks in order to increase accuracy. We demonstrate that this newly developed assay is a robust, cost-effective, accurate and reproducible approach for large-scale genotyping of DNA pools. We also discuss potential improvements of the software for more accurate allele frequency analysis.     

High-Speed Detection of the G894T Polymorphism in Exon 7 of the eNOS Gene by Real-Time Fluorescence PCR with the Light-Cycler

In endothelial cells nitric oxide (NO) is synthesized by endothelial-nitric oxide synthase (e-NOS), constitutively expressed and encoded by a 26-exon gene, located on chromosome 7q35-36. The prevalence of the T rare variant of the G894T polymorphism in exon 7 of the e-NOS gene (Glu-->Asp amino acid substitution) has been reported to be significantly higher in patients with coronary spasm and coronary artery disease. To date G894T polymorphism detection is performed by PCR-RFLP assay. In order to establish a high-speed genotyping method, we have taken advantage of the Light Cycler instrument, a thermal cycler that combines rapid-cycle DNA amplification with a real-time fluorescence monitoring. This technology is based on hybridization of the adjacent fluorescently labeled probes with PCR products. This methodology is considered more accurate and less time-consuming than conventional PCR-RFLP assay. To validate this technique we genotyped 270 healthy subjects. The results were consistent with those obtained from PCR-RFLP assay.     

Detection of Trichinella spiralis, T. britovi and T. pseudospiralis in muscle tissue with real-time PCR

Infections caused by Trichinella species occur throughout the world in many wild and domestic animals resulting in trichinellosis in men. In Europe, domestic pigs are predominantly infected by three Trichinella species: T. spiralis, T. britovi and T. pseudospiralis. Present methods for detection of Trichinella spp. (compressorium method, artificial digestion) do not always sufficiently recognize Trichinella larvae and these techniques are labor-intensive, time consuming and do not differentiate isolates on the species level since there are no distinguishing morphological features. Additionally, conventional PCRs cannot quantify numbers of larvae in infectious material. In order to better meet these requirements, we developed a real-time PCR assay for the accurate, rapid and specific identification of the three common European species of the genus Trichinella. The assay targets the large subunit of the mitochondrial rRNA (rrnL) and enables sensitive determination and discrimination of larvae in muscle tissue samples. The real-time PCR assay was developed and validated using reference and field strains from T. spiralis, T. britovi and T. pseudospiralis. In the described real-time PCR assay, the melting points of specific amplificates were always discernable via the melting curve from melting points of unspecific amplificates. This is important for the methods workflow because only C(T) values connected with the additional melting curve analysis allow a distinction of the individual species with confidence. The sensitivity of the technique enabled detection down to 0.1 Trichinella larva per gram meat sample. High disruption levels of tissues by mincing generally resulted in higher sensitivities than protocols without mincing. With its short completion time as well as accurate and specific detection of selected species this assay could become a convenient tool for the fast detection of Trichinella larvae in meat.     

An MLPA-based approach for high-resolution genotyping of disease-related multi-allelic CNVs

Copy number variation has recently been recognized as an important type of genetic variation that modifies human phenotypes. Copy number variants (CNVs) are being increasingly associated with various human phenotypes and diseases. However, the lack of an appropriate method that allows fast, inexpensive and, most importantly, accurate CNVs genotyping significantly hampers CNV analysis. This limitation especially affects the analysis of multi-allelic CNVs that frequently modify various phenotypes. Recently, we developed a multiplex ligation-dependent probe amplification (MLPA)-based strategy for multiplex copy number genotyping and the validation of candidate CNV-miRNAs. Here we present the adaptation and optimization of this recently developed method for high-resolution genotyping of individual disease-related multi-allelic CNVs. We developed appropriate assays for three well-known and extensively studied CNVs: CNV-CCL3L1, CNV-DEFB, and CNV-UGT2B17, which have been associated with various human phenotypes including inflammation-related and infectious diseases. With the use of these assays we identified several general factors that allow to increase the resolution of the copy number genotyping. Performed experiments confirmed the high reproducibility and accuracy of the obtained genotyping results. The reliability of the results and relatively low per-genotype cost makes this strategy an attractive method for large-scale experiments such as genotype–phenotype association studies.     

PEG化重组尿酸氧化酶蛋白含量测定方法研究

目的:以未修饰的原型蛋白为对照品,建立准确测定2种聚乙二醇化重组尿酸氧化酶(PEG-rUOX)含量的方法。方法:以原型蛋白rUOX为对照品,利用凝胶色谱法测定PEG-rUOX中的蛋白含量,通过详细的专属性、精密度、准确性等方法学考察,建立该方法。色谱条件:采用TSK Gel 5000PWxl(300 mm×7.8 mm)凝胶色谱柱,以含0.15mol/L氯化钠的0.05 mol/L的Tris-HCl溶液(pH9.0)为流动相,流速0.5 mL/min,柱温为室温,检测波长280 nm。结果:在280 nm下,2种rUOX在200~1000μg/mL浓度范围内线性关系良好(r2分别为1和0.9999),其高、中、低平均回收率均较高,为98.33%~99.96%。结论:本方法专属性、精密度和准确性良好,可作为PEG-rUOX的含量测定方法。     

A versatile fluorescence-based multiplexing assay for CAPS genotyping on capillary electrophoresis systems

Recent advances in next-generation sequencing techniques and the development of genomics resources for crop plants with large genomes allow the detection of a large number of single nucleotide polymorphisms (SNPs) and their use in a high-throughput manner. However, such large numbers of SNPs are on the one hand not needed in some plant breeding projects and on the other hand not affordable in some cases, raising the need for fast and low-cost innovative techniques for marker detection. In marker selection in plant breeding programs, cleaved amplified polymorphic sequence (CAPS) markers still play a significant role as a complement to other high-throughput methods for SNP genotyping. New methods focusing on the acceleration of CAPS-based genotyping are therefore highly desirable. The combination of the classical CAPS method and a M13-tailed primer multiplexing assay was used to develop an agarose-gel-free protocol for the analysis of SNPs via restriction enzyme digestion. PCR products were fluorescence-labeled with a universal M13 primer and subsequently digested with the appropriate restriction endonuclease. After mixing differently labeled products, they were detected in a capillary electrophoresis system. This method allowed the cost-effective genotyping of several SNPs in barley in a multiplexed manner at an overall low cost in a short period of time. This new method was efficiently combined with the simultaneous detection of simple sequence repeats in the same electrophoresis run, resulting in a procedure well suited for marker-based selection procedures, genotyping of mapping populations and the assay of genetic diversity.     

唐鱼卵黄蛋白原的ELISA检测方法的建立

目的探索建立唐鱼卵黄蛋白原的ELISA检测方法。方法以卵黄脂磷蛋白（Lv）抗血清为抗体,以纯化的Lv作为抗原建立间接酶联免疫吸附反应（ELISA）方法检测雄性唐鱼（Tanichthys albonubes）整体匀浆液中的卵黄蛋白原（Vtg）。结果利用ELISA方法测定了经17-β雌二醇（E2）和不同浓度DDTs暴露21 d诱导的雄鱼整体匀浆液中的Vtg含量,可以直接在1块或在不同的酶标板上准确地进行比较。经0.055 mg/mL E2诱导的雄鱼整体匀浆液中Vtg含量为4148.33μg/g;当暴露DDTs浓度为0.0275、0.0137和0.0067 mg/mL时,雄鱼整体匀浆液中Vtg含量分别为1109.43、911.16和1322.79μg/g,与丙酮溶剂对照组462.79μg/g比较差异存在显著性（P〈0.05）。结论建立了唐鱼卵黄蛋白原的ELISA检测方法 ,本方法的检测灵敏度为8.1 ng/mL,批内误差为8.59%,批间误差为6.28%,工作范围为3.26～209.25 ng/mL。在该范围内,标准曲线具有良好的线性和重复性。