Nucleosomal anatomy – where are the histones?

The recent surge of discoveries concerning the structural organization of nucleosomes, together with genetic evidence of highly specialized roles for the histones in gene regulation, have brought a renewed need for a detailed understanding of nucleosomal anatomy. Here we review recent structural advances leading to a new level of understanding of the nucleosome and chromatin fibre structure. We discuss the problems and challenges for existing models of chromatin structure and, in particular, consider how linker histones may bind within the nucleosome, together with the implications of their association for the structure of the chromatin fibre.     

Vocal Plasticity – are Pied Flycatchers,Ficedula Hypoleuca,Open‐Ended Learners?

In some songbird species, large song repertoires are advantageous in female attraction, whereas song sharing with neighbours may give an advantage in male–male competition. Open‐ended learners, with the ability to memorize new song elements throughout their lives, may learn from territorial neighbours and thus benefit from increasing both repertoire size and song sharing. A distinction needs to be made between true adult song learning, i.e. memorization of novel song elements, and vocal plasticity resulting in changes in the use of previously memorized elements, such as the use of hidden repertoires or increased production of previously rare syllable types. We assessed the ability of adult pied flycatcher Ficedula hypoleuca males to learn previously unheard song elements and to change their song production in response to playback of unfamiliar, conspecific song, emulating a singing neighbour. After a 1‐week playback treatment, three out of 20 subjects had learned foreign song elements, providing evidence from the wild that pied flycatchers are true open‐ended learners. However, the syllable sharing with the playback stimulus repertoires had not changed, and the males’ repertoires had decreased rather than increased. Hence, we did not find support for increased syllable sharing with neighbours or increased repertoire size as functions of adult song learning in pied flycatchers. Because pied flycatcher song seems to serve mainly for mate attraction, copying of attractive syllable types is a possible alternative function of adult song learning in this species.     

Predation yields greater population performance: what are the contributions of density‐ and trait‐mediated effects?

1. Population responses to extrinsic mortality can yield no change in the number of survivors (compensation) or an increase in the number of survivors (overcompensation) when the population is regulated by negative density‐dependence. This intriguing response has been the subject of theoretical studies, but few experiments have explored how the source of extrinsic mortality affects the response.
2. This study tests abilities of three functionally diverse predators, alone and combined, to induce (over)compensation of a prey population. Larval Aedes aegypti (Diptera: Culicidae) were exposed to predation by Mesocyclops longisetus (Crustacea: Copepoda), Anopheles barberi (Diptera: Culicidae), Corethrella appendiculata (Diptera: Corethrellidae), all three in a substitutive design, or no predation.
3. Predator treatment had no significant effect on the total number of adult survivors, nor on numbers of surviving males or females. The female development rate and a composite index of performance (r′) were greater with predation relative to no‐predator control. No differences were detected between diverse and single‐species predator treatments.
4. Sensitivity analyses indicated predation effects on the number of female adults produced, despite not being affected significantly, was the largest contributing factor to significant treatment effects on the demographic index r′. While predation did not significantly increase the production of adults, it did release survivors from density‐dependent effects sufficiently to increase population performance. This study provides an empirical test of mechanisms by which predation may yield positive mortality effects on victim populations, a phenomenon predicted to occur across many taxa and food webs.

     

Melanoma‐associated leukoderma – immunology in black and white?

Melanoma is an ‘immunogenic tumor’, often highly infiltrated with lymphocytes, which are capable of inducing regression of the primary tumor. The commonly observed phenomenon of regression suggests substantial cross‐talk between immune cells and transformed melanocytes. An immune response to melanocyte differentiation antigens common to transformed and normal melanocytes manifests clinically at distant sites as melanoma‐associated vitiligo or halo nevi. Despite similar antigenic targets, the pathogenesis and prognosis differ between the different melanoma‐associated leukodermas. Understanding immunologic cross‐talk between melanocytes and the immune system will aid the development of approaches to combat melanoma.     

Short telomeres in short‐lived males: what are the molecular and evolutionary causes?

Telomere length regulation is an important aspect of cell maintenance in eukaryotes, since shortened telomeres can lead to a number of defects, including impaired cell division. Although telomere length is correlated with lifespan in some bird species, its possible role in aging and lifespan determination is still poorly understood. Here we investigate telomere dynamics (changes in telomere length and attrition rate) and telomerase activity in the ant Lasius niger, a species in which different groups of individuals have evolved extraordinarily different lifespans. We found that somatic tissues of the short-lived males had dramatically shorter telomeres than those of the much longer-lived queens and workers. These differences were established early during larval development, most likely through faster telomere shortening in males compared with females. Workers did not, however, have shorter telomeres than the longer-lived queens. We discuss various molecular mechanisms that are likely to cause the observed sex-specific telomere dynamics in ants, including cell division, oxidative stress and telomerase activity. In addition, we discuss the evolutionary causes of such patterns in ants and in other species.     

Cold stress and acclimation – what is important for metabolic adjustment?

As sessile organisms, plants are unable to escape from the many abiotic and biotic factors that cause a departure from optimal conditions of growth and development. Low temperature represents one of the most harmful abiotic stresses affecting temperate plants. These species have adapted to seasonal variations in temperature by adjusting their metabolism during autumn, increasing their content of a range of cryo‐protective compounds to maximise their cold tolerance. Some of these molecules are synthesised de novo. The down‐regulation of some gene products represents an additional important regulatory mechanism. Ways in which plants cope with cold stress are described, and the current state of the art with respect to both the model plant Arabidopsis thaliana and crop plants in the area of gene expression and metabolic pathways during low‐temperature stress are discussed.     

When, where, and in what environment could the RNA world appear and evolve?

The environment necessary for the existence, amplification, and evolution of the RNA world, the difficulties of the abiogenous synthesis of RNA, and paradoxical situations with the stability of RNA, its functions, and the place of RNA in the geological history of the Earth are discussed. The chemical instability of the covalent structure of RNA in the aqueous medium is incompatible with the necessity of water for formation of its functionally active conformations (“water paradox”). The stable double-helical structure of RNA required for replication is incompatible with the stable compact conformations of single-stranded RNA molecules that are necessary for catalytic functions (conformational paradox). There was a very short time gap (or no gap at all) between the end of the massive meteorite bombardment of the Earth (3.9 Ga ago) and the appearance of the first evidence of cellular life (bacteria) in the Earth’s rocks (3.8–3.85 Ga ago or even earlier) (geological paradox). It is concluded that the RNA world could not appear, exist, or evolve into cellular forms of life on the Earth. This paper briefly discusses the possibility of an extraterrestrial origin of the RNA world and its extraterrestrial evolution with a subsequent distribution in space (mainly by comets) of the cellular form of life as more resistant to the environment as compared with free RNA.     

SMN and Gemins: ‘We are family’ … or are we?

Gemins 2-8 and Unr-interacting protein (UNRIP) are intimate partners of the survival motor neuron (SMN) protein, which is the determining factor for the neuromuscular disorder spinal muscular atrophy (SMA). The most documented role of SMN, Gemins and UNRIP occurs within the large macromolecular SMN complex and involves the cytoplasmic assembly of spliceosomal uridine-rich small nuclear ribonucleoproteins (UsnRNPs), a housekeeping process critical in all cells. Several reports detailing alternative functions for SMN in either motor neurons or skeletal muscles may, however, hold the answer to the extreme neuromuscular tissue specificity observed in SMA. Recent discoveries indicate that collaboration between SMN and Gemins also extends to these non-canonical functions, hence raising the possibility that mutations in Gemin genes may be the cause of unlinked neuromuscular hereditary syndromes. This review evaluates the functions of Gemins and UNRIP inside the SMN complex and discusses whether these less notorious SMN complex members are capable of acting independently of SMN.     

Vaults are the answer, what is the question?

Vaults are large cytoplasmic ribonucleoprotein (RNP) particles of eukaryotic cells, whose considerable abundance and striking evolutionary conservation argue for an important general cellular function. Early studies on vaults focused on the structural features and cellular distribution of the particle and will only be summarized briefly here. In this article, we discuss the molecular characterization of vault components and describe genetic studies carried out in Dictyostelium. The recent finding that the major vault protein is elevated in non-P-glycoprotein multidrug resistant cancer cells has direct implications concerning the function of the vault particle and indicates a potential role for vaults in resistance of tumour cells to anticancer drugs.     

Ants and the enigmatic Namibian fairy circles – cause and effect?

1. Parts of the Namibian landscape show extensive surface perturbation in the form of long‐lived, yet dynamic ‘fairy circles'. While exerting profound ecological effects on 7.3% of the land surface, the origin and nature of these large bare discs embedded in an arid grassland matrix remains unresolved. 2. We found no evidence to support the current hypothesis of a termite origin for fairy circles but instead observed a strong spatial association between fairy circles and large nests of the ant Black pugnacious ant Anoplolepis steingroeveri Forel, with much higher ant abundances on the circles compared with the matrix. 3. Aggression trials showed that different colonies of A. steingroeveri were located on different circles, and that the species was polydomous. 4. Fairy circles and Pogonomyrmex ant nests both have a bare disc surrounding the nest, are overdispersed (evenly spaced), and are associated with elevated soil moisture. Fairy circle soils exhibited a five‐fold increase in soil moisture when compared with the matrix. 5. Senescent Stipagrostis obtusa (Delile) Nees seedlings were only observed on the circles and not in the matrix, and were found to have a reduction in both root length and number of roots. 6. Anoplolepis steingroeveri excavated the root system of both S. obtusa seedlings on the disc and Stipagrostis ciliata (Desf.) de Winter grasses on the perimeter of the circles, where they tended honeydew‐secreting Meenoplidae bugs that fed on grass roots and culms. The bugs occurred almost exclusively on grasses associated with the circles. This ant–bug interaction is a possible mechanism for the observed reduction in root length and number of senescent grass seedlings on the circles.     

Who Is the King? The α‐Hydroxy‐β‐oxo‐α,β‐enone Moiety or the Catechol B Ring: Relationship between the Structure of Quercetin Derivatives and Their Pro‐Oxidative Abilities

Quercetin and other flavonoids have been reported to exhibit both antioxidant and pro‐oxidant properties. Most studies about the pro‐oxidative ability were conducted in the presence of metal ions, and the essential functional moiety of quercetin responsible for the pro‐oxidative effect is still unclear. In this study, we evaluated the pro‐oxidative abilities in the absence of metal ions of two quercetin derivatives, i.e., quercetin‐3′‐O‐β‐D ‐glucoside ( 1 ) and quercetin‐3‐O‐β‐D ‐glucoside ( 2 ), by assessing DNA cleavage and HO^.‐radical production. The binding mode between these compounds and DNA was studied by fluorescence and viscometric titrations. The results showed that 1 can efficiently induce oxidative damage to plasmid DNA, while 2 shows poor activity. Both 1 and 2 bind to DNA via groove‐binding. These results proved that the α‐hydroxy‐β‐oxo‐α,β‐enone moiety contributes to the pro‐oxidative activity of quercetin.     

Endopterygote systematics – where do we stand and what is the goal (Hexapoda,Arthropoda)?

Abstract. Impressive progress has been made recently in the systematics of holometabolous insects. Nevertheless, important questions remain controversial, and uncertainties concerning the relationships of major lineages may even have increased. New analytical techniques have been developed and an immense wealth of molecular data has accumulated. Although no decisive breakthrough has yet been achieved, recent analyses of large molecular datasets have contributed greatly to the reconstruction of the phylogeny of several holometabolous lineages. Extensive combined analyses with substantial morphological datasets and molecular data comprising several genes (‘total evidence’) are still required for a well‐founded phylogenetic hypothesis for the entire group. Endopterygota monophyly is supported mainly by the specific and derived mode of development, which may be considered as a new evolutionary level within Hexapoda. The basal branching pattern remains controversial. A division into two large clades comprising Coleoptera (+ Strepsiptera?) + Neuropterida, on the one hand, and Hymenoptera + [Amphiesmenoptera + Antliophora (including Strepsiptera?)], on the other, appears plausible. Alternative hypotheses have been proposed based on wing characters and molecular data. The position of Strepsiptera remains unsolved. Mecoptera almost certainly is not monophyletic, as Siphonaptera are probably sister to Boreidae. Immense progress has been made in the reconstruction of the intraordinal relationships of all orders, thanks to increasing studies based on combined datasets. Common efforts of morphologists and molecular systematists probably will lead to further rapid progress. Several discoveries of new higher ranking taxa during recent years have revealed that large‐scale habitat destruction will not only have disastrous effects on global biodiversity, but also on the study of insect phylogeny and evolution.