From binding studies to the molecular biology of GABA receptors

Conclusions The GABA_A-complex remains enigmatic despite the substantial amount of information that has been gathered. The work of Barnard's group on the structure of the complex and the relationship of the recognition sites for GABA and benzodiazepines to its protein subunits has raised as many questions as have been answered. The existence of multiple forms of the subunit and the ability of various combinations of the subunits to mediate GABA-gated choloride conductance suggest that there may be many forms of the GABA_A-complex. Thus, the identification of previously unsuspected drug interactions, and evidence for the existence of additional endogenous ligands beside GABA (e.g. benzodiazepine-binding inhibitor (68) and certain steroids (69), all suggest that the characterization of the GABA_A-complex has only begun.Special issue dedicated to Dr. Erminio Costa     

Cellulose degradation by Clostridium thermocellum: From manure to molecular biology

Clostridium thermocellum, a Gram-positive, thermophilic anaerobe produces a highly active cellulase system. This system, termed the cellulosome, is a complex composed of at least 14-18 different types of components organized around a large, cellulose-binding protein. Combining recombinant DNA technology and protein biochemistry has proved to be a successful approach in unravelling some important features of the system.     

From 'omes to biology

Technologies that have emerged from the genome project have dramatically increased our ability to generate data on the way in which organisms respond to their environments, how they execute their programmes of development and growth, and how these are altered in the development of disease states. However, our ability to analyse these large datasets has not kept pace with our ability to generate them and consequently new strategies must be developed to address the issues associated with their analysis. One approach that we have employed quite successfully is to look at data from microarrays (or proteomics or metabolomics experiments) not as independent datasets, but rather as elements of a much larger body of biological information across various scales that must be integrated with, and interpreted within, the context of such ancillary data. Here we outline the general approach and provide three examples from published studies of the way in which we have applied this strategy.     

Na+−Ca2+ exchanger: From basics to molecular biology

The plasmalemmal Na⁺−Ca²⁺ exchanger is a coupled Na⁺ and Ca²⁺ transport mechanism that plays an important role in regulation of Ca²⁺ homeoslasis in many cell types. A robust Na⁺−Ca²⁺ exchange system is present in the heart where it comprises essential Ca²⁺ extrusion, as well as Ca²⁺ entry pathways, that significantly contribute to the maintenance of cardiac contractility. The review examines the basic properties of Na⁺−Ca²⁺ exchange, the patterns of its regulation, as well as the latest achievements in the cloning and structure-function studies of a Na⁺−Ca²⁺ exchanger molecule.     

From 'omes to biology

Technologies that have emerged from the genome project have dramatically increased our ability to generate data on the way in which organisms respond to their environments, how they execute their programmes of development and growth, and how these are altered in the development of disease states. However, our ability to analyse these large datasets has not kept pace with our ability to generate them and consequently new strategies must be developed to address the issues associated with their analysis. One approach that we have employed quite successfully is to look at data from microarrays (or proteomics or metabolomics experiments) not as independent datasets, but rather as elements of a much larger body of biological information across various scales that must be integrated with, and interpreted within, the context of such ancillary data. Here we outline the general approach and provide three examples from published studies of the way in which we have applied this strategy.     

Proteomics, nanotechnology and molecular diagnostics

Sequencing of the human genome opened the way to the exploration of the proteome and this has lead to the identification of large numbers of proteins in complex biological samples. The identification of diagnostic patterns in samples taken from patients to aid diagnosis is in the early stages of development. The solution to many of the technical challenges in proteomics and protein based molecular diagnostics will be found in new applications of nanomaterials. This review describes some of the physical and chemical principles underlying nanomaterials and devices and outlines how they can be used in proteomics; developments which are establishing nanoproteomics as a new field. Nanoproteomics will provide the platform for the discovery of next generation biomarkers. The field of molecular diagnostics will then come of age.     

Engineering imaging probes and molecular machines for nanomedicine

Nanomedicine is an emerging field that integrates nanotechnology, biomolecular engineering, life sciences and medicine; it is expected to produce major breakthroughs in medical diagnostics and therapeutics. Due to the size-compatibility of nano-scale structures and devices with proteins and nucleic acids, the design, synthesis and application of nanoprobes, nanocarriers and nanomachines provide unprecedented opportunities for achieving a better control of biological processes, and drastic improvements in disease detection, therapy, and prevention. Recent advances in nanomedicine include the development of functional nanoparticle based molecular imaging probes, nano-structured materials as drug/gene carriers for in vivo delivery, and engineered molecular machines for treating single-gene disorders. This review focuses on the development of molecular imaging probes and engineered nucleases for nanomedicine, including quantum dot bioconjugates, quantum dot-fluorescent protein FRET probes, molecular beacons, magnetic and gold nanoparticle based imaging contrast agents, and the design and validation of zinc finger nucleases (ZFNs) and TAL effector nucleases (TALENs) for gene targeting. The challenges in translating nanomedicine approaches to clinical applications are discussed.     

Translation of the long-term fundamental studies on viral DNA packaging motors into nanotechnology and nanomedicine

Many years of fundamental studies on viral genome packaging motors have led to fruitful applications. The double-stranded DNA(dsDNA) viruses package their genomes into preformed protein shells via nanomotors including several elegant and meticulous coaxial modules. The motor is geared by the hexameric RNA ring. An open washer displayed as hexametric string of phi29 motor ATPase has been reported. The open washer linked into a filament as a queue with left-handed chirality along the dsDNA chain. It was found that a free 5′-and 3′-dsDNA end is not required for one gp16 dimer and four monomers to assemble into the hexametric washer on dsDNA. The above studies have inspired several applications in nanotechnology and nanomedicine. These applications include:(i) studies on the precision motor channels have led to their application in the single pore sensing;(ii) investigations into the hand-in-hand integration of the hexametric pRNA ring have resulted in the emergence of the new field of RNA nanotechnology; and(iii) the studies on the motor stoichiometry of homologous multi-subunits that subsequently have inspired the discovery of new methods in highly potent drug development. This review focuses on the structure and function of the viral DNA packaging motors and describes how fundamental studies inspired various applications. Given these advantages, more nanotechnological and biomedical applications using bacteriophage motor components are expected.     

Nanozymes: an emerging field bridging nanotechnology and biology

正Enzymes are biological catalysts that can convert substrates into products in biochemical reactions.In 1926,the first enzyme,urease,was determined to be a protein by James B.Sumner who won the Nobel Prize in 1946.Since then,enzymes have been considered to be proteins,which allows them to achieve their high catalytic activity with high specific activity under mild conditions.However,in general,the enzyme activity of proteins is lost after exposure to extremes of p H and high temperature,and proteins are also susceptible to digestion by proteases in the environment,which dramatically hinders their practical applications in     

From molecular biology to biotics: the development of bio-, info- and nano-technologies.

Important scientific and technological developments have been achieved in biology during the last few years. Through the application of these developments, biotechnology will have a growing influence on the life sciences and their industrial use in the near future. This influence is evident in new drug design and in the development of diagnostic tests, bioelectronic equipment, and services. It has been observed that three fields of study are becoming increasingly interdependent: the molecular, the computational, and the mechanical. This convergence is achieved through the still closer relationships between biotechnologies, infotechnologies, nanotechnologies and microelectronics.