Identifying potential restoration areas of freshwater wetlands in a river delta

Identification of potential restoration areas is significant and important for implementing a sustainable restoration project and maintaining the ecosystem integrity. We established an eco-hydrological approach to identify potential restoration areas of freshwater wetlands that should and can be restored. Our eco-hydrological method identifies potential restoration areas from three dimensions, namely, transverse, longitudinal and vertical directions. Based on transfer matrix analysis between freshwater wetland and other land cover types and bird habitat suitability assessment, we identified the areas that should be restored under the 1989 and 2000 goals were 36,112 ha and 37,230 ha, respectively. Based on hydrological connectivity and balance between ecological water supply (EWS) and ecological water requirements (EWRs), the area can be restored under the 1989 and 2000 goals were 31,165 ha and 33,963 ha, respectively. The approach and results of this study can help in future restoration efforts in the Yellow River Delta and other similar coastal wetlands.     

Pursuing glacier retreat: genetic structure of a rapidly expanding Larix decidua population

One of the greatest threats to the long-term viability of migrating plant species is the loss of genetic diversity due to founder effects. Populations can expand as a response to climate change, but it is uncertain if long-lived plant species can maintain sufficient genetic diversity at the leading edge of migrating populations. This study uses an expanding Larix decidua population investigated along a chronosequence at landscape (350 ha) and local (0.8 ha) scales to test whether accelerated migration as a result of climate warming has the potential to intensify genetic erosion. Nine SSR markers revealed similar genetic diversity among eight sub-populations along the chronosequence (overall H(e) = 0.73; SE=0.04). Sub-populations were not genetically differentiated and all sampled individuals (N=730) formed one major genetic cluster indicating homogenizing gene flow despite spatial genetic structure (SGS) up to 80 m. At the local scale, individuals at the leading edge [early successional sub-population (ESSP), N =140] and a sub-population at equilibrium [late successional sub-population (LSSP), N = 290] revealed high genetic diversity in largest-sized cohorts. SGS among juveniles occurred up to 30 m in LSSP but there was no structure in ESSP. Accordingly, a maximum likelihood paternity assignment revealed local gene dispersal in LSSP (2-48 m) and intermediate-to-long distance dispersal into ESSP (115-3132 m). The findings indicate intensive mixing of the genes in this expanding population instead of founder effects and support the view that genetic diversity can be maintained in a long-lived species during rapid population expansion driven by climate warming.     

Extinction order and altered community structure rapidly disrupt ecosystem functioning

By causing extinctions and altering community structure, anthropogenic disturbances can disrupt processes that maintain ecosystem integrity. However, the relationship between community structure and ecosystem functioning in natural systems is poorly understood. Here we show that habitat loss appeared to disrupt ecosystem functioning by affecting extinction order, species richness and abundance. We studied pollination by bees in a mosaic of agricultural and natural habitats in California and dung burial by dung beetles on recently created islands in Venezuela. We found that large-bodied bee and beetle species tended to be both most extinction-prone and most functionally efficient, contributing to rapid functional loss. Simulations confirmed that extinction order led to greater disruption of function than predicted by random species loss. Total abundance declined with richness and also appeared to contribute to loss of function. We demonstrate conceptually and empirically how the non-random response of communities to disturbance can have unexpectedly large functional consequences.     

The influence of water depth and flow regime on phytoplankton biomass and community structure in a shallow,lowland river

Hydrobiologia - The taxonomic composition and biomass of phytoplankton in the San Joaquin River, California, were examined in relation to water depth, flow regime, and water chemistry. Without...     

Physical factors and dissolved reactive silica affect phytoplankton community structure and dynamics in a lowland eutrophic river (Po river,Italy)

We tested the hypothesis that species composition and persistence of phytoplankton communities in nutrient rich lowland rivers depends mainly on physical factors. The study aimed to analyse the effects of water discharge, temperature and chemistry on phytoplankton dynamic and species composition in the lowland reach of the eutrophic Po river (Italy). Both taxonomical and morpho-functional methods were used. True planktonic and tychoplanktic (i.e. detached taxa of benthic origin that remain in suspension) species were found, among which only a few taxa and functional groups prevailed. Diatoms were the most abundant, with a clear dominance of species either sensitive to the onset of water stratification or well adapted to turbid waters. Phytoplankton abundance, biomass and chlorophyll-a followed similar trends, attaining the highest values in summer, at low discharge rates. Correlation and multivariate analysis revealed that the development of a stable phytoplankton community was mainly controlled by water discharge rates. Namely, changes in water flow rates induced major variations in the community structure. The seasonal succession of phytoplankton assemblages was also related to water temperature and dissolved reactive silica availability to some extent overlapping flow effects.     

Denitrification and bacterial community structure in the cascade of six reservoirs on a tropical river in Brazil

Hydrobiologia - Denitrification activity was measured by the acetylene blockage technique in six reservoirs of the Tietê River, southeastern Brazil, in March 1999 and July 1999. The total...     

Plant diversity,structure and regeneration potential in tropical forests of Western Ghats,India

Diversity, stand structure and regeneration potential are the key elements of any forest ecosystem. For the present study, seven sites were selected with the aims of assessing plant diversity, structure and regeneration potential in tropical forests across Kanyakumari Wildlife Sanctuary (KWLS), Western Ghats, India. The sites were classified based on the similarity: tropical dry deciduous sites (TDDs I and II), tropical semi-evergreen sites (TSEs I and II) and tropical evergreen sites (TEFs I-III). The phytosociological survey was done by laying a total of 70 plots (10 plots in each study site). Standard methods were followed for the assessment of diversity, structure and regeneration patterns. A total of 267 species (205 genera, 70 families) were recorded. The tree species richness ranged 24 (TDD II) – 76 (TEF III). Of the vegetation spectrum, trees, vines and understorey accounted 56.5, 15.3 and 28.2% respectively to the total flora documented. A total of 66 species were endemic. The total tree density and tree basal area (seedlings, saplings, juveniles and adults) were 18,790 individuals (mean 2684) and 137.6 m² (mean 19.7 m²) in 70 plots respectively. The mean tree adult density and basal area ranged 370 (TDD I) – 900 (TEF I) individuals/ha and 24.2 (TDD I) – 75.3 (TEF III) m²/ha respectively. The overall species richness was highest in TDD I, but TEF III had the highest tree species richness. The diameter class-wise distribution showed the characteristic ‘reverse J-shaped’ curve. Most tree species were ‘newly recruited’. The dominant species had ‘fair’ to ‘good’ regeneration potential. However, 12 tree species showed ‘no’ regeneration. The overall regeneration pattern of trees was ‘good’, but ‘no’ or ‘poor’ regeneration patterns in some tree species, especially endemics is a point of concern. Since a majority of tree species were ‘new recruits’, species composition may likely change in the future. The results obtained would help in understanding diversity patterns, structural attributes and regeneration potential in tropical forests of protected areas for better forest management and conservation.     

Environmental factors shaping the archaeal community structure and ether lipid distribution in a subtropic river and estuary,China

Applied Microbiology and Biotechnology - Archaea are widespread and abundant in aquatic and terrestrial habitats and play fundamental roles in global biogeochemical cycles. Archaeal lipids, such as...     

Macroinvertebrate community structure and biological traits related to flow permanence in a Mediterranean river network

In Mediterranean climate areas, the great seasonal variability in temperature and rainfall is considered to be an evolutionary pressure that constrains plant and animal communities and their biological traits. Droughts alter habitat availability (changes of flow alter riffle-pool sequences), although habitat characteristics may also exacerbate drought to some extent. Using a simple quantitative index based on the proportion of conglomerate bedrock versus gravel and cobbles, pools versus riffles and winter versus summer flow, we show how habitat characteristics (in terms of substratum and flow) may influence the permanency of a stream site and how flow permanence constrains macroinvertebrate community structure and biological traits. Annual and seasonal macroinvertebrate richness, and the EPT (Ephemeroptera, Plecoptera and Trichoptera) and OCH (Odonata, Coleoptera and Hemiptera) metrics differed between permanent, intermittent and ephemeral sites, but not between permanent and intermittent sites. In contrast, distinct biological traits were observed in the three flow categories, although permanent sites presented few significant traits which was attributed to the stability of the habitat. Intermittent sites were dominated by taxa with pool-like strategies, while ephemeral sites were characterized by fauna with life-history adaptations to floods and droughts. In contrast to most traits (e.g., dissemination, reproduction, substrate relation), which were more constrained by local flow and substrate characteristics, life-cycle characteristics did not differ significantly among flow categories. This pattern can be explained by the features of the Mediterranean climate and particularly its high seasonal predictability, which serves as a large-scale filter of life-cycle traits, independently of local hydromorphological characteristics. Our findings indicate that drought is related to habitat characteristics and that local habitat variability favours organisms with certain traits, while other traits are independent of habitat variability on this scale and are probably affected by other large-scale habitat characteristics. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: S. Declerck     

Macroinvertebrate community structure along gradients of hydraulic and sedimentary conditions in a large gravel-bed river

1. The spatial distribution of macroinvertebrate species was examined in relation to hydraulic and sedimentary conditions in a large gravel‐bed river, the Fraser River, Canada. Mean annual discharge in the Fraser River is 2900 m3 s?1 and annual flood discharge, due to snowmelt in May and June, averages 8760 m3 s?1.
2. Invertebrates were sampled from four water depths (0.2, 0.5, 1.5, 3.0 m) at various levels of discharge that together captured the spatial and temporal variability of the physical habitat. Several hydraulic (near‐bed shear velocity, Boundary Reynolds number, turbulence intensity, depth‐averaged velocity, Froude number, Reynolds number) and substratum variables (mean grain size, Trask's sorting coefficient, Nikuradse's roughness, percentage of fine sediment, and Shields entrainment function) were measured for each sample of macroinvertebrates. Concentrations of fine and coarse particulate organic matter were also assessed.
3. The physical habitat was characterized by a major gradient of hydraulic conditions that corresponded positively with increasing water depth and accounted for 52% of the total variation in the habitat data. Substratum conditions and the concentration of organic matter explained 24% of the total variation in the habitat data.
4. The distribution of invertebrates was correlated significantly with hydraulic variables and suggests that hydraulic conditions represent a major physical gradient along which the benthic community is organized. The distribution of organic matter and substratum texture were also important for some species. The spatial distribution of most species reflected morphological and trophic suitability to particular habitat conditions.
5. Hydraulic stress associated with foraging and maintaining position, as well as organic matter retention in coarse substrata, are probable mechanisms affecting the spatial distribution of macroinvertebrates.     

Influences of dams with different levels of river connectivity on the fish community structure along a tropical river in Southeastern Brazil

The influence of three types of dams with different degrees of river connectivity on the structure of fish communities along the Paraíba do Sul River was studied: total blockage (Dam 1); partial blockage allowed by a permanent lateral channel (Dam 2); and total blockage, but with a mechanism operating in the summer for fish passage (Dam 3). The tested hypothesis is that the degree of river connectivity influences the fish community. The largest differences in fish fauna were expected between the reservoir and downriver stretch in Dam 1 with total blockage; an intermediate difference in Dam 3 with total blockage but with a fish passage; and the least difference in Dam 2 with partial blockage. Fish were caught by gill nets between January and March 2010 and between January and February 2011 (wet seasons) in two zones: the reservoir and the downriver stretch from the dam. A total of 43 fish species was recorded, including eight non‐native and two marine species. The 13 most abundant species (n > 100; frequency of occurrence >20%) occurred in all three stretches of the river. The community structure changed significantly between the reservoir and associated downriver stretch, with higher richness downriver compared to the reservoir zone. A trend for higher occurrence of migratory fishes (e.g. Pimelodus maculatus, Pimelodus fur, Leporinus copelandii and Prochilodus lineatus) was found in the downriver zone, suggesting the influence of dams on their upriver migration. The predictions were not fully matched. Although the most significant difference in the fish community structure between the reservoir and the downriver was found for Dam 1, the partial blockage in Dam 2 showed broader differences in the fish fauna than the total blockage in Dam 3 with the fish ladder, which may indicate that the latter is not a guarantee that species and genetic flux will be interchanged, since the water velocity may be a constraint to upriver fish migration.     

Factors influencing fish distribution and community structure in a small coastal river in southwestern Costa Rica

We evaluated the relative importance of habitat size and diversity and distance from the ocean in explaining longitudinal patterns of fish distribution and community structure (species richness, evenness, and diversity) in the lower 5 km of the Rio Claro. The Rio Claro is a small coastal river in Corcovado National Park, southwestern Costa Rica, with a depauperate freshwater fish fauna. We observed 22 species in pools, 19 of which occured during quantitative sampling. Most of these species probably spent part of their lives in the Pacific Ocean. We observed no species in riffles, although these habitats were common and several taxa (e.g., Gobiesocidae, Gobiidae) were adapted for life in fast turbulent water. Fish abundance, and species richness, evenness, and diversity were highest near the ocean, where high tides influenced river levels and salinity. Eight species were not observed further than 2900 m from the ocean, whereas 6 species were not encountered in samples nearest the ocean; the remaining 8 species were present throughout the study area. Distance from the ocean was a better predictor of fish abundance and community structure than were pool width, pool depth, pool surface area, pool volume, amount of cover present, substrate diversity, or depth diversity. Based in qualitative comparisons of our data with previously published data from 1980–1986, the fish assemblage of the Rio Claro is persistent in both species composition and relative abundance.     

大辽河水系夏季浮游植物群落结构特征及水质评价

作为建立中国水环境生态学基准的基础性工作,于2010年7月,按照相关规范的要求,对大辽河水系浮游植物群落结构和水质状况进行了调查.结果表明:调查期间大辽河水系共检出5门124种或变种,其中以绿藻和硅藻为主,分别占43.55％和31.45％;总细胞密度在2.05×105～1.46×107个·L-1,平均6.35×106个·L-1,绿藻和硅藻占优势;主要优势种是硅藻的颗粒直链藻极狭变种(Melosira granulata var.angustissima);共检出污染指示种44种,其中β-中污带指示种居多,有36种,占所有指示种的81.81％;Shannon多样性指数为1.43 ～2.68,Margalef指数为1.00～1.78,Pielou均匀度指数为0.52 ～0.83;综合水体中浮游植物的密度、优势种类、指示种、生物多样性指数评价表明,大辽河水系处于富营养化状态、中等程度污染水平.     

Links between ammonia oxidizer community structure, abundance, and nitrification potential in acidic soils

Ammonia oxidation is the first and rate-limiting step of nitrification and is performed by both ammonia-oxidizing archaea (AOA) and bacteria (AOB). However, the environmental drivers controlling the abundance, composition, and activity of AOA and AOB communities are not well characterized, and the relative importance of these two groups in soil nitrification is still debated. Chinese tea orchard soils provide an excellent system for investigating the long-term effects of low pH and nitrogen fertilization strategies. AOA and AOB abundance and community composition were therefore investigated in tea soils and adjacent pine forest soils, using quantitative PCR (qPCR), terminal restriction fragment length polymorphism (T-RFLP) and sequence analysis of respective ammonia monooxygenase (amoA) genes. There was strong evidence that soil pH was an important factor controlling AOB but not AOA abundance, and the ratio of AOA to AOB amoA gene abundance increased with decreasing soil pH in the tea orchard soils. In contrast, T-RFLP analysis suggested that soil pH was a key explanatory variable for both AOA and AOB community structure, but a significant relationship between community abundance and nitrification potential was observed only for AOA. High potential nitrification rates indicated that nitrification was mainly driven by AOA in these acidic soils. Dominant AOA amoA sequences in the highly acidic tea soils were all placed within a specific clade, and one AOA genotype appears to be well adapted to growth in highly acidic soils. Specific AOA and AOB populations dominated in soils at particular pH values and N content, suggesting adaptation to specific niches.     

The rapidly expanding CREC protein family: members,localization, function,and role in disease

Although many aspects of the physiological and pathophysiological mechanisms remain unknown, recent advances in our knowledge suggest that the CREC proteins are promising disease biomarkers or targets for therapeutic intervention in a variety of diseases. The CREC family of low affinity, Ca²⁺‐binding, multiple EF‐hand proteins are encoded by five genes, RCN1, RCN2, RCN3, SDF4, and CALU, resulting in reticulocalbin, ER Ca²⁺‐binding protein of 55 kDa (ERC‐55), reticulocalbin‐3, Ca²⁺‐binding protein of 45 kDa (Cab45), and calumenin. Alternative splicing increases the number of gene products. The proteins are localized in the cytosol, in various parts of the secretory pathway, secreted to the extracellular space or localized on the cell surface. The emerging functions appear to be highly diverse. The proteins interact with several different ligands. Rather well‐described functions are attached to calumenin with the inhibition of several proteins in the endoplasmic or sarcoplasmic reticulum membrane, the vitamin K₁ 2,3‐epoxide reductase, the γ‐carboxylase, the ryanodine receptor, and the Ca²⁺‐transporting ATPase. Other functions concern participation in the secretory process, chaperone activity, signal transduction as well as participation in a large variety of disease processes.     

Long-term monitoring of benthic macroinvertebrate community structure: a perspective from a Colorado river*

Temporal and spatial trends were examined in benthic macroinvertebrate and physical-chemical data collected for at least ten years at ten sites along the plains reach of the Cache la Poudre River, Colorado, USA. A distinct longitudinal environment gradient was found as many of the water chemistry parameter levels changed downstream from the reference site. Seasonal Kendall analyses on individual sites indicated that several chemical parameters, including conductivity, un-ionized NH₃-N and NO₂-N have increased since the beginning of the study within most sites. Levels of some parameters (e.g., dissolved oxygen, un-ionized NH₃-N) violated aquatic life standards a few times during the study.Over 175 taxa of macroinvertebrates (primarily insects) were collected in the study reach from 1981–1996. Results from detrended correspondence analyses (DCA) on macroinvertebrate data indicated that this stretch of the river exhibited little longitudinal change beyond the two farthest upstream sites. There was a decline in macroinvertebrate density and total number of taxa within most individual sites during 1983–1984, corresponding with the highest recorded discharge in 75 years (1983) and a prolonged, heavy spring runoff in 1984. Taxa richness and density recovered to pre-1983 levels within a few months to a year following the high flows at most sites. These findings suggested that the macroinvertebrate assemblages had low resistance to disturbance, but high resilience. However, the results from DCAs and Kendall's Coefficient of Concordance (W) on individual sites for the entire study period suggested a similar macroinvertebrate community structure through time. It would appear that the composition and abundance of the lotic macroinvertebrate assemblages in the Poudre River has remained relatively constant over the long-term. This has occurred even with some potentially negative changes in water chemistry and increased urban development.     

重污染河道治理中的浮游动物群落结构变化研究

利用氧化塘-河道原位生物修复的方法对广州市古廖涌黑臭水体进行治理,并对治理前、氧化塘处理、原位生物修复河段上游和下游四个不同治理阶段的水体进行水质和浮游动物的监测,试图通过对监测结果的对比分析,确定反应河道黑臭水体不同治理程度的浮游动物群落结构特征和指示种。研究结果表明,在不同的修复阶段,水体COD_cr、BOD₅、氮和磷等污染物逐步得到去除,透明度大大提高;浮游动物群落结构发生显著变化,浮游动物群落生物多样性和均匀度提高,浮游动物种类和数量明显增加,尤其是轮虫的种类和数量的变化。水体修复完成后,浮游动物的优势种轮虫由花箧臂尾轮虫(Brachionus capsuliflorus)转变为角突臂尾轮虫(Brachionus angularis)和Brachionus rubens,枝角类优势种为微型裸腹溞(Moina micrura),桡足类在数量上以无节幼体(Naupii)占绝对优势;可作为重污染河道水体修复的指示浮游动物主要有轮虫的花箧臂尾轮虫、角突臂尾轮虫、Brachionus rubens、螺形龟甲轮虫(Keratella cochlearis)、奇异六腕轮虫(Pedalia mira)、胶鞘轮虫(Collothecasp.),桡足类的无节幼体,枝角类的微型裸腹溞。     

Helminth community structure in an expanding white-winged dove (Zenaida asiatica asiatica) population

Helminth communities of 171 fledged white-winged doves (Zenaida asiatica asiatica) from the expanding eastern population in Texas (USA) were examined from hosts collected 11 June to 19 September 1997 within their historical range, new breeding periphery, and an intermediate area. Eleven helminth species, representing 435 individuals, were found. Helminths occurred in three microhabitats, of which the small intestine was the most commonly occupied. Nematodes dominated numerically (76% of total worms), followed by cestodes (17%), and trematodes (7%). Infracommunities were species-poor; the most complex infracommunity consisted of three helminth species, which occurred in three host individuals, followed by two species that occurred in 13 hosts. The remaining 155 doves had one (70) or no (85) species. The overall helminth component community was species-poor and was dominated by Ascaridia columbae which occurred in 26% of the white-winged doves and accounted for 65% of all helminth individuals. Prevalence and abundance of A. columbae varied by geographic region and host age, but not by host sex. Helminth component communities varied by geographic region, host age, and host sex. These differences were primarily attributable to unique occurrences of uncommon species within specific host subpopulations. Results suggest that the white-winged doves' multimodal regional abundance pattern, sympatry with other columbids, and granivorous diet may be more important in shaping helminth community structure than the influences often associated with geographic range expansion.     

Forest structure of a subtropical mangrove along a river inferred from potential tree height and biomass

The hypothesis was tested that potential tree height and biomass in mangroves decrease downstream with the tidal gradient along the Okukubi River in Okinawa Island, Japan. The mangrove stands consisted of Bruguiera gymnorrhiza (L.) Lamk. and Kandelia obovata (S., L.) Yong (Rhizophoraceae). Four sites were selected considering the distance from the mouth of the river. Soil salinity increased downstream, while soil total nitrogen content decreased. The soil redox potential did not vary along the river. Maximum gross photosynthesis and tree height for each species decreased downstream. The potential tree height (H_max) inferred from the stem diameter (D_0.1)–tree height (H) relationship ( a, h, coefficient) in each species decreased downstream. The tree density (ρ)–mean tree size () relationships ( K, α, coefficient) determined for four sites revealed that the mean tree size at any given tree density decreased downstream, which indicates the decrease of potential biomass. Furthermore, an index for biomass () was homogeneous within a site regardless of tree density, i.e. the value of α at each site did not differ significantly from 1.0 (p > 0.05). The decreases in potential tree height and biomass may be partially ascribed to the stressful environments at the downstream sites characterized by high salinity (>2.6%) and nitrogen-poor soils (<0.25 ppt) in our study area.     

Macroinvertebrate community structure and altitudinal changes in the upper reaches of a warm temperate southern African river

1. The Buffalo River rises 1200m above sea level, drops 600m in the first 7km, and a further 100m in the next 30 river kilometres. Macroinvertebrates were sampled, and environmental variables measured monthly in 1987, at four sites along this part of the river. 2. Flow at the headwater site (1120m a.s.l., 1 km from the source) was seasonal, though pools remained and subterranean flow was continuous. Twelve macroinvertebrate taxa were found exclusively at this site, where conductivity, pH and nutrient concentrations were low. 3. Flow at the foothill site (530m a.s.l., 7km from the source) was perennial. The invertebrate community, although distinct from that at downstream sites, lacked the unique taxa of the headwater site. Conductivity, pH and nutrient concentrations were higher. 4. The two sites downstream of the foothills (450m a.s.l., 18km from the source, and 410m a.s.l., 31 km from the source), had similar invertebrate communities. Conductivity, pH and nutrient concentrations were higher than at the upper sites. 5. Community structure changed most between the headwater and foothill sites. This paralleled changes in river steepness rather than changes in measured physicochemical variables.