Limited polymorphism of the functional MHC class II B gene in the black‐spotted frog (Pelophylax nigromaculatus) identified by locus‐specific genotyping

Amphibians can be more vulnerable to environmental changes and diseases than other species because of their complex life cycle and physiological requirements. Therefore, understanding the adaptation of amphibians to environmental changes is crucial for their conservation. Major histocompatibility complex (MHC) presents an excellent tool for the investigation of adaptive variations and the assessment of adaptive potential because it can be under strong diversifying selection. Here, we isolated the MHC class II B (MHCIIB) gene from cDNA sequences of the black‐spotted frog (Pelophylax nigromaculatus), a widespread amphibian species in China, and designed locus‐specific primers to characterize adaptive variability of this amphibian. Ten alleles were identified from 67 individual frogs of three populations and no more than two alleles were present in each individual animal. Furthermore, none of the sequences had indels or/and stop codons, which is in good agreement with locus‐specific amplification of a functional gene. However, we found low polymorphism at both nucleotide and amino acid levels, even in the antigen‐binding region. Purifying selection acting at this locus was supported by the findings that the d_N/d_S ratio across all alleles was below 1 and that negatively selected sites were detected by different methods. Allele frequency distributions were significantly different among geographic populations, indicating that physiographic factors may have strong effect on the genetic structure of the black‐spotted frog. This study revealed limited polymorphism of three adjacent black‐spotted frog populations at the functional MHCIIB locus, which may be attributed to region‐specific differences. The locus‐specific genotyping technique developed in this study would provide a foundation for future studies on adaptive divergence among different frog populations.     

Sleep and vigilance linked to melanism in wild barn owls

Understanding the function of variation in sleep requires studies in the natural ecological conditions in which sleep evolved. Sleep has an impact on individual performance and hence may integrate the costs and benefits of investing in processes that are sensitive to sleep, such as immunity or coping with stress. Because dark and pale melanic animals differentially regulate energy homeostasis, immunity and stress hormone levels, the amount and/or organization of sleep may covary with melanin‐based colour. We show here that wild, cross‐fostered nestling barn owls (Tyto alba) born from mothers displaying more black spots had shorter non‐REM (rapid eye movement) sleep bouts, a shorter latency until the occurrence of REM sleep after a bout of wakefulness and more wakefulness bouts. In male nestlings, the same sleep traits also correlated with their own level of spotting. Because heavily spotted male nestlings and the offspring of heavily spotted biological mothers switched sleep–wakefulness states more frequently, we propose the hypothesis that they could be also behaviourally more vigilant. Accordingly, nestlings from mothers displaying many black spots looked more often towards the nest entrance where their parents bring food and towards their sibling against whom they compete. Owlets from heavily spotted mothers might invest more in vigilance, thereby possibly increasing associated costs due to sleep fragmentation. We conclude that different strategies of the regulation of brain activity have evolved and are correlated with melanin‐based coloration.     

猪MyoG基因的PCR-RFLP多态性分析

以杜洛克、长白、大约克、南昌白、二花脸、梅山猪、玉山黑猪、乐平花猪、金华两头乌及上高两头乌等中外10个猪种共计561头猪为研究材料,采用3对引物（PCR1、PCR2、PCR3）分别扩增猪肌细胞生成素（MyoG）基因的不同区域,扩增产物经限制性核酸内切酶MspⅠ酶切后发现：（1）在PCR1 MspⅠ-RFLP位点上,外来品种杜洛克、长白、大约克及培育品种南昌白中极大多数个体表现为AA型,个别为BB型;而6个中国地方猪种除乐平花猪外均以BB型居多。（2）在PCR2 MspⅠ-RFLP位点上,6个中国地方猪种除一头玉山黑猪表现为MN型外,其余均为MM型;而外来品种以NN型占大多数,培育品种南昌白更趋向于外来品种。（3）在PCR3 MspⅠ-RFLP位点上,所有猪种均可得到扩增产物,但无MspⅠ酶切位点。（4）在梅山猪及与其亲缘关系较近的二花脸猪中,没有发现Soumillion等(1997)报道的梅山猪特异性MspⅠ多态性酶切位点。     

Conditioning ewes and lambs to increase consumption of spotted knapweed

Spotted knapweed (Centaurea maculosa Lam.) is an invasive plant that alters species composition and grazing value of rangelands in the northwestern United States. The spread of invasive plants may be reduced by using livestock as a biological control. We determined if mature ewes and their lambs (n = 34 ewe/lamb pairs) consume more spotted knapweed when ewes and/or lambs are conditioned to fresh-cut spotted knapweed. Ewe/lamb pairs were randomly assigned to one of four conditioning treatments: ewes and lambs not conditioned to spotted knapweed (N), conditioned ewes with non-conditioned lambs (E), non-conditioned ewes with conditioned lambs (L), or conditioned ewes and lambs (both—B). Then, ewes and lambs were observed together for 5 days (Trial 1); 11 days later, lambs were observed for 4 days without their mothers (Trial 2). During conditioning, intake by conditioned and non-conditioned ewes and lambs varied over time (as-fed basis, treatment by day interaction; ewes P = 0.03; lambs P = 0.05). Overall, non-conditioned lambs (N, E) consumed more than conditioned lambs (L, B; P = 0.02). In Trial 1, N ewes consumed similar amounts of spotted knapweed and bromegrass (Bromus inermis Leyss.) as the E, L, and B ewes (P = 0.67). E ewes spent more time eating spotted knapweed than L ewes (P = 0.001), and E ewe/lamb pairs consumed more spotted knapweed than L ewe/lamb pairs (P = 0.02). In Trial 2, N lambs consumed less spotted knapweed than E, L, and B lambs (P = 0.06). L lambs consumed more than E lambs (P = 0.007). Conditioning ewes, lambs, or ewes and lambs did not increase time spent eating spotted knapweed when both grazed together in a drylot, but conditioned lambs, without their mothers present, consumed more spotted knapweed 11 days later than non-conditioned lambs. Conditioning lambs only in a group setting with their peers may have the greatest potential to enhance consumption of spotted knapweed, because of social facilitation and the predilection for young animals to try novel feeds.     

Female plumage spottiness signals parasite resistance in the barn owl (Tyto alba)

The hypothesis that extravagant ornaments signal parasite resistancehas received support in several species for ornamented malesbut more rarely for ornamented females. However, recent theorieshave proposed that females should often be under sexual selection,and therefore females may signal the heritable capacity toresist parasites. We investigated this hypothesis in the sociallymonogamous barn owl, Tyto alba, in which females exhibit on average more and larger black spots on the plumage than males,and in which males were suggested to choose a mate with respectto female plumage spottiness. We hypothesized that the proportionof the plumage surface covered by black spots signals parasiteresistance. In line with this hypothesis, we found that theectoparasitic fly, Carnus hemapterus, was less abundant onyoung raised by more heavily spotted females and those flieswere less fecund. In an experiment, where entire clutches werecross-fostered between nests, we found that the fecundity ofthe flies collected on nestlings was negatively correlatedwith the genetic mother's plumage spottiness. These resultssuggest that the ability to resist parasites covaries with theextent of female plumage spottiness. Among females collecteddead along roads, those with a lot of black spots had a smallbursa of Fabricius. Given that parasites trigger the developmentof this immune organ, this observation further suggests thatmore spotted females are usually less parasitized. The same analyses performed on male plumage spottiness all provided non-significant results. To our knowledge, this study is the first one showingthat a heritable secondary sexual characteristics displayedby females reflects parasite resistance.     

Insights from ecological niche modeling on the taxonomic distinction and niche differentiation between the black‐spotted and red‐spotted tokay geckoes (Gekko gecko)

The black‐spotted tokay and the red‐spotted tokay are morphologically distinct and have largely allopatric distributions. The black‐spotted tokay is characterized by a small body size and dark skin with sundry spots, while the red‐spotted tokay has a relatively large body size and red spots. Based on morphological, karyotypic, genetic, and distribution differences, recent studies suggested their species status; however, their classifications remain controversial, and additional data such as ecological niches are necessary to establish firm hypotheses regarding their taxonomic status. We reconstructed their ecological niches models using climatic and geographic data. We then performed niche similarity tests (niche identity and background tests) and point‐based analyses to explore whether ecological differentiation has occurred, and whether such differences are sufficient to explain the maintenance of their separate segments of environmental ranges. We found that both niche models of the black‐ and the red‐spotted tokay had a good fit and a robust performance, as indicated by the high area under the curve (AUC) values (“black” = 0.982, SD = ± 0.002, “red” = 0.966 ± 0.02). Significant ecological differentiation across the entire geographic range was found, indicating that the involvement of ecological differentiation is important for species differentiation. Divergence along the environmental axes is highly associated with climatic conditions, with isothermality being important for the “black” form, while temperature seasonality, precipitation of warmest quarter, and annual temperature range together being important for the “red” form. These factors are likely important factors in niche differentiation between the two forms, which result in morphological replacement. Overall, beside morphological and genetic differentiation information, our results contribute to additional insights into taxonomic distinction and niche differentiation between the black‐ and the red‐spotted tokay.     

Animals as an indicator of carbon sequestration and valuable landscapes

Possibilities of the assessment of a landscape with the use of succession development stages, monitored with the value of the Mean Individual Biomass (MIB) of carabid beetles and the occurrence of bird species are discussed on the basis of an example from Poland. Higher variability of the MIB value in space signifies a greater biodiversity. Apart from the variability of MIB, it is suggested to adopt the occurrence of the following animals as indicators, (in the order of importance), representing underlying valuable landscapes: black stork, lesser spotted eagle, white-tailed eagle, wolf, crane and white stork. The higher number of these species and their greater density indicate a higher value of the landscape for biodiversity and ecosystem services, especially carbon sequestration. All these indicators may be useful to assess measures for sustainable land use.     

Evaluation of phylogenetic relationship between three phenotypically different forms of Red date palm weevil Rhynchophorus ferrugineus Oliv. using PCR-based RAPD technique

Abstract

Red date palm weevil Rhynchophorus ferrugineus Oliv. is a widespread major pest of date palm in the Kingdom of Saudi Arabia. Three different forms (black and brown with and without spots on thoracic region) were investigated using PCR-based RAPD technique. Although weevils were collected from the same geographical region of Al-Hassa in Saudi Arabia, the banding profile acquired suggested that black and brown colored morphs are genetically closer compared to the brown with spots. Intra color variation remained minimum in black but brown and brown spotted morphs exhibited more genetic variation. This genetic variation may be either due to the generation of new mutants from the non-spotted or spotted weevil or they may belong to a different race.     

Polymorphism and pair formation in the mosquitofish Gambusia holbrooki (Pisces: Poeciliidae)

Synopsis Pair formation was studied in a polymorphic population of Gambusia holbrooki in a brackish drainage canal in Southern Florida. All females and the majority of males were gray colored and only 5% of the males were black spotted. A small fraction of the population formed pairs, composed of a female and a male that swam synchronously and close together for several minutes. During pairing the male often achieved gonopodial contact with the female. Black spotted males occurred in pairs ten fold more frequently than expected under random pairing. The major behavioral mechanism accounting for the disproportionate occurrence of spotted males in pairs is, probably, the preference of females for these males.     

Visual warning signals of the ladybird Harmonia axyridis: the avian predators’ point of view

Previous studies have suggested that spotted patterns are important in the protection of ladybirds against attack by avian predators. Nevertheless, these studies were based on the comparison of several ladybird species differing in colouration, but also in other traits (e.g., chemical protection). We presented natural as well as artificial colour modifications (using brown, red, and black paint) of the ladybird Harmonia axyridis (Pallas) (Coleoptera: Coccinellidae) – an invasive alien species for Europe – to an avian predator, the great tit, Parus major L. (Passeriformes: Paridae). All forms were considered to be equal in size, but differed in colouration and in the presence of spots. The chemical protection was equal except for one form. The birds displayed strong avoidance of all forms with red and black colouration; beetles with artificially removed red colouration (painted brown) were attacked more often. The beetles painted brown with black spots were slightly better protected than the painted beetles without spots. We can sum up that spots are of some importance in the protection of ladybirds; nevertheless, red and black colouration is the main part of the visual signal.     

Measurement of jaw viscoelasticity in newborn and adult lesser spotted dogfish Scyliorhinus canicula (L., 1758)

Jaw viscoelasticity of newborn and adult lesser spotted dogfish Scyliorhinus canicula was measured using dynamic mechanical analysis. Jaws of newborn animals were significantly more viscoelastic than those of adults. As a result, newborn lesser spotted dogfish might be unable to consume hard prey items, unlike adults.     

No signs of Na+/K+‐ATPase adaptations to an invasive exotic toxic prey in native squamate predators

Invasions by exotic toxic prey, like the release of the South American cane toad (Bufo (Rhinella) marinus) to the toad‐free Australian continent in 1935, have been shown to result in massive declines in native predator numbers. Due to minor nucleotide mutations of the Na⁺/K⁺‐ATPase gene most Australian squamate predators are highly susceptible to cane toad toxin. However, in spite of this, predators like yellow‐spotted goannas (Varanus panoptes) and red‐bellied black snakes (Pseudechis porhyriacus) still persist in parts of Queensland where they, in some areas, have co‐existed with cane toads for more than 70 years. Here, we show that the amino acids of the Na⁺/K⁺‐ATPase enzyme in the two species do not provide toad toxin resistance, and hence the two Queensland predators are still highly susceptible to cane toad toxin. Both yellow‐spotted goannas and lace monitors (Varanus varius) have, however, been recorded avoiding feeding on cane toads in areas where they co‐exist with this toxic amphibian. Moreover, both varanids have also been shown to learn to avoid feeding on toads when first subjected to conditioned taste aversion. Such behavioural shifts may therefore explain why yellow‐spotted goannas and red‐bellied black snakes still exist in cane toad infested areas of Queensland. The process appears, however, to be unable to rapidly restore varanid populations to pre‐toad population numbers as even after 10 years of co‐existence with cane toads in the Northern Territory, we see no signs of an increase in yellow‐spotted goanna numbers.     

Vitamin E in captive and wild black rhinoceros (Diceros bicornis)

The mean plasma level of alpha-tocopherol (vitamin E) measured in 31 free-ranging black rhinoceros (Diceros bicornis) was significantly higher (P less than 0.001) than that in 11 captive animals (means +/- SE = 0.77 +/- 0.05 and 0.18 +/- 0.03 micrograms/ml, respectively). Vitamin E status may influence the health of captive black rhinoceros; in particular, it may be linked to hemolytic anemia commonly observed in these animals in captivity.     

Molecular evolution of the Asian francolins (Francolinus, Galliformes): A modern reappraisal of a classic study in speciation

We investigated the evolution of the Asian francolins, five little known species in the genus Francolinus (Phasianidae). Evolutionary affinities of two of these species, F. gularis (swamp francolin) and F. pondicerianus (grey francolin), has long remained unclear. In contrast, the other three species, F. pintadeanus (Chinese francolin), F. pictus (painted francolin) and F. francolinus (black francolin) have been cast among the "spotted francolins" on a morphological and ecological basis. Previous molecular DNA investigations including Asian francolins mostly relied upon partial gene sequencing of one specimen per species (no more than three species and with the exclusion of F. pictus). Therefore, fundamental questions do persist. What relationship exists among the spotted and the other Asian francolins? What is the geographic origin of the black francolin, the species with the largest distribution range? How did the geological history influence the diversification of francolins across Asia? We sequenced the entire Control Region of the mitochondrial DNA in 228 samples of all five Asian francolin species, which were collected in 16 countries (from East Europe to East Asia). We constructed a molecular phylogeny according to four different procedures. We showed the monophyly of each of the Asian francolins and the spotted group, while that of the entire Asian group was presumed according to a biogeographical model we proposed. The splitting of the genus Francolinus occurred ～17.4Ma (95% HPD: 13.4-22.1) while the spotted francolins diverged ～10.5Ma (7.0-14.9). We resolved the most recent common ancestor to painted and black francolin as being in the Indian sub-continent, thus suggesting a westwards adaptive radiation of the latter. In Pakistan, we identified F. f. asiae representatives in the Northern Areas and in the Sindh. The latter represents a relict population of Indian fauna within the Pakistani range of the Great Rann of Kachchh.     

Influence of Nutrient Availability on the Interaction Between Spotted Knapweed and Bluebunch Wheatgrass

Centaurea maculosa (Lam.) (spotted knapweed) reduces wildlife and livestock habitat biodiversity and increases erosion. Nutrient availability to plants may be used to accelerate succession away from spotted knapweed. Early‐successional plant communities often have high nutrient availability, whereas late‐successional communities are often found on lower nutrient soils. We hypothesized that removal of nutrients would change the competitive advantage from spotted knapweed to Pseudoroegneria spicatum (bluebunch wheatgrass) (late seral). In two addition series matrices, background densities of Secale cereale (annual rye) and Elymus elimoides (bottlebrush squirreltail) (3,000 seeds/m²) were used to remove nutrients from the soil. In another set of addition series matrices, nitrogen (33 kg/ha) or phosphorus (33 kg/ha) were added to the soil. Nutrient analysis of soil and vegetation indicated that annual rye and bottlebrush squirreltail reduced nutrient availability in soils. In another matrix, neither a background density nor nutrients were added. Data were fit into Watkinson's curvilinear model to determine the competitive relationship between bluebunch wheatgrass and spotted knapweed. This allowed comparison of the equivalence ratios (C) generated from each addition series. The C parameters are the per‐plant equivalent of bluebunch wheatgrass or spotted knapweed and can be interpreted as the ratio of intra‐to‐interspecific competition. The C parameters are also the equivalence ratio of the number of spotted knapweed it takes to have equivalent effect on bluebunch wheatgrass or the number of bluebunch wheatgrass having the equivalent effect on spotted knapweed. Without nutrient manipulation, spotted knapweed was more competitive than bluebunch wheatgrass. The C for bluebunch wheatgrass was 0.17, indicating that 0.17 knapweed plants were competitively equivalent to one wheatgrass. Annual rye changed the competitive balance in favor of bluebunch wheatgrass (C = 9.9). Addition of nitrogen, phosphorus, or the mid‐seral species did not change the competitive relationship between the two species. This preliminary study suggests that succession from spotted knapweed to late‐seral bluebunch wheatgrass community may be accelerated by altering resource availability.     

边际多样性方法在中国猪种保护资金分配中的应用

农业动物种质资源面临着严重危机, 有必要构建一个科学、有效的保护方案, 合理分配有限的资金, 以期保护最大的多样性。本文应用边际多样性方法, 以中国18个地方猪种为例, 通过对灭绝概率、现实多样性、边际多样性和保护潜力的分析, 应用3种模型分析了未来群体期望多样性变化趋势, 并提出了相应的资金优化配置方案。在文中所涉及的模型中, 加性模型(Model A)被评定为资金优化配置的最佳模型; 共有10个品种获得保护资金, 其中杭猪获得最高比例(16％)的保护资金; 其次为赣中南花猪(万安猪)、嵊县花猪, 各获得14％; 阳新猪、乐平猪各获得11%; 五指山猪、玉山乌猪、赣中南花猪(冠朝猪)、清平猪、武夷黑猪和嘉兴黑猪分别获得10％、9％、9％、2％、2％和2％的保护资金。结果表明, 分配保护资金需综合考虑群体的受威胁程度、群体遗传多样性和经济重要性等。     

同域分布3种啄木鸟冬季取食的生态位差异

为了掌握黑啄木鸟、三趾啄木鸟和大斑啄木鸟的冬季取食行为特征,特别是三者之间取食生态位的差异,于2016年1月5-13日,在黑龙江省凉水国家级自然保护区以样线法结合样方法对3种啄木鸟的取食生境和取食行为进行了系统调查,收集了15个生境和行为特征变量数据。共布设45条样线,484个对照样方,收集312组啄木鸟取食数据,其中黑啄木鸟73组,三趾啄木鸟97组,大斑啄木鸟142组。多变量回归树和多分类逻辑斯谛分析结果显示,3种啄木鸟在所调查的15项特征上存在显著分异。采用基于利用-可利用方法的Bailey''s方法和双因子方差分析,分别对3种啄木鸟的生境选择和行为特征进行分析,结果显示：黑啄木鸟和三趾啄木鸟偏好在郁闭度较高的原始云、冷杉林中取食,而大斑啄木鸟则随机地在各种林型、生境中取食。黑啄木鸟、三趾啄木鸟多在树干取食,黑啄木鸟更常在倒木上取食,而大斑啄木鸟则多在树冠层取食。黑啄木鸟基本只在主干上凿洞,其他两种特别是大斑啄木鸟则可以在侧枝上取食。与黑啄木鸟和大斑啄木鸟凿洞取食昆虫不同,三趾啄木鸟多通过扒去树皮获得食物。黑啄木鸟的取食树基本为死树,单树取食时间最长,大斑啄木鸟多在活树上取食,单树取食时间最短,经常更换取食树,而三趾啄木鸟的取食树则死活参半,单树取食时间也较长。黑啄木鸟的冬季取食行为节律表现为双峰形,日出后和日落前各有一个活动高峰,其他两种则于白天持续取食。3种啄木鸟取食生境和行为生态位的差异,使它们能够更有效地利用有限的食物资源,共存于同一森林。     

Nuclear-follower foraging associations of reef fishes and other animals at an oceanic archipelago

Synopsis Fish species in many families and different trophic levels forage by following fishes and other animals. This interspecific foraging association was examined at an oceanic archipelago in the tropical West Atlantic. We recorded 27 reef fish species, two invertebrate species, and one turtle species playing the nuclear role, and 26 reef fish species acting as followers. The puddingwife wrasse following the spotted goatfish was the commonest foraging association recorded. The spotted goatfish was the nuclear fish that attracted the largest number of follower species (68% of the total number of follower species). The coney and the Noronha wrasse were the follower species that associated with the largest number of nuclear species (63 and 55% of the total number). About 20% of the reef fish species recorded in the archipelago engages in interspecific foraging associations. Substratum disturbance is a strong predictor for a fish displaying the nuclear role in the association, whereas the follower role may be predicted by carnivory. Nuclear species are diverse both in morphology and behaviour, and the nuclear role may be played either by fishes or other marine animals from invertebrates to turtles. Followers, on the other hand, comprise fishes only, which tend to display a more uniform feeding behaviour.     

Do increases in the availability of standing dead trees affect the abundance,nest-site use,and niche partitioning of great spotted and middle spotted woodpeckers in riverine forests?

Standing dead trees may be a limited resource for woodpeckers in managed forests, especially for species that rely on dead wood for their nest or roost cavity, and as foraging sites. Effective conservation strategies for woodpeckers require a detailed knowledge of species’ responses to dead wood availability. To investigate the importance of standing dead wood (snags) for the abundance and nest-site use of the great spotted woodpecker Dendrocopos major and middle spotted woodpecker Leiopicus medius in mature riverine forests, we compared the responses of birds between two periods—before mass mortality, and during a pulse in standing dead trees. The density of standing dead trees available for cavity excavation by the great spotted woodpecker and the middle spotted woodpecker increased significantly during the study period: 37-fold and 4-fold, respectively. Temporal trends in the abundance of both woodpecker species from 2000 to 2015 were not significant. Great spotted woodpeckers were significantly more likely to use dead trees and places with wounds in species other than oak and ash during the outbreak period than in the pre-outbreak period. Middle spotted woodpeckers were significantly less likely to excavate cavities in tree species other than oak and ash in the outbreak period, but dead trees were more likely selected. An interspecific comparison suggests that the probability of a nest-hole having been excavated by a middle spotted woodpecker increased with a nest-hole sited in ash, in a dead tree, in a limb/branch, and decreased with a nest-hole in a closed forest. These findings suggest that woodpecker species, especially weak excavators, may benefit from an increase in dead wood availability leading to nest niche shifts into more favorable substrates for cavity excavation. However, a strong increase in dead wood availability does not modify the general pattern of niche partitioning between great spotted and middle spotted woodpeckers. Conservation plans for the specialized middle spotted woodpecker must consider the preference for dead and decaying trees. The decreasing number of large ashes and oaks, and the lack of natural regeneration of the latter species, may negatively affect the middle spotted woodpecker in the future.