New Bovid fossils from the Late Miocene Hasnot (Siwaliks,Pakistan)

The Siwalik Late Miocene bovids from the Hasnot deposits of Northern Pakistan are described here. The bovids are represented predominantly by boselaphines. The Hasnot outcrops range 7–5 Ma and correspond to the fauna of the Late Miocene–Early Pliocene of Eurasia and Africa. The associated fauna of Hasnot is suggestive a vast open land environment depicting sporadic dry and flood seasons, forcing a mosaic of ecotonal habitats with countless number of niches.     

Miocene hyaenids (Hyaenidae; Carnivora) from Siwaliks of Pakistan

Newly discovered Miocene hyaenid specimens, recently collected from the Siwalik Group, are described and discussed. A careful comparison with the known material reveals that these specimens belong to the early hyaenid species Thalassictis cf. T. proava, Ictitherine indet. and Lepthyaena sivalensis. The stratigraphic range of T. proava extended up to the Dhok Pathan Formation (Middle Miocene to Early Pliocene). The stratigraphic range of T. proava comprises the Middle to Late Miocene, with the youngest record in Hasnot, Potwar Plateau in the Siwalik Group. The material is of great interest because Siwalik carnivoran material is rare.     

Dietary Ecology of Murinae (Muridae,Rodentia): A Geometric Morphometric Approach

Murine rodents represent a highly diverse group, which displays great ecological versatility. In the present paper we analyse the relationship between dental morphology, on one hand, using geometric morphometrics based upon the outline of first upper molar and the dietary preference of extant murine genera, on the other. This ecomorphological study of extant murine rodents demonstrates that dietary groups can be distinguished with the use of a quantitative geometric morphometric approach based on first upper molar outline. A discriminant analysis of the geometric morphometric variables of the first upper molars enables us to infer the dietary preferences of extinct murine genera from the Iberian Peninsula. Most of the extinct genera were omnivore; only Stephanomys showed a pattern of dental morphology alike that of the herbivore genera.     

New Late Miocene murids from China (Mammalia, Rodentia)

New murids of Late Miocene (medial Baodean Chinese Mammal Unit) age from Inner Mongolia, northern China, and from Yunnan Province, southern China, are described. Hansdebruijnia perpusilla nov. sp. represents the earliest known and morphologically most primitive species of the genus, which is known from the latest Miocene of Europe and western Asia. The new species suggests an eastern Palaearctic origin of Hansdebruijnia. “Progonomys” yunnanensisQIU and STORCH, 1990 from Lufeng, Yunnan Province, is referred to Linomys nov. gen. New samples from Leilao, Yuanmou County, Yunnan Province, are included in this species, although this population is somewhat more primitive than that from Lufeng. Leilaomys zhudingi nov. gen. and sp. from Leilao shows a unique combination of apomorphic and plesiomorphic characters, which suggest an early divergence from the murid stem. The new findings indicate that our knowledge of the early radiation of murids in southeast Asia is still in its infancy.     

Molecular identification of four cryptic species of Mastomys (Rodentia,Murinae)

Multimammate rats (genus Mastomys) are abundant in many regions throughout sub-Saharan Africa, and are of high economical and sanitary importance as agricultural pests as well as reservoir/vectors of human diseases. In pest management and in epidemiological studies, unequivocal species identification of individuals collected in the field is crucial. However, the discrimination among most of the Mastomys species is often difficult, if not impossible, on the basis of external characters. Karyology provides unambiguous specific assignations, but is not suitable for population studies involving large numbers of individuals because it requires fresh material and/or quick transfer from the field to the laboratory. The purpose of this study was to search for molecular markers allowing a clear discrimination of field collected individuals on the basis of ethanol-preserved samples. Using sequences of the cytochrome b region of mitochondrial DNA, two molecular tests based on species-specific primers (test 1) and restriction sites generating species-specific profiles (test 2), were designed and evaluated for species identification on a large number of karyotypically or electrophoretically unambiguously determined individuals. The tests clearly discriminate the four most widespread species. They are easy to perform on a small piece of ear or tail taken from live animals, and can probably be adapted to identify museum specimens.     

DNA barcoding of Murinae (Rodentia: Muridae) and Arvicolinae (Rodentia: Cricetidae) distributed in China

Identification of rodents is very difficult mainly due to high similarities in morphology and controversial taxonomy. In this study, mitochondrial cytochrome oxidase subunit I (COI) was used as DNA barcode to identify the Murinae and Arvicolinae species distributed in China and to facilitate the systematics studies of Rodentia. In total, 242 sequences (31 species, 11 genera) from Murinae and 130 sequences (23 species, 6 genera) from Arvicolinae were investigated, of which 90 individuals were novel. Genetic distance, threshold method, tree‐based method, online BLAST and BLOG were employed to analyse the data sets. There was no obvious barcode gap. The average K2P distance within species and genera was 2.10% and 12.61% in Murinae, and 2.86% and 11.80% in Arvicolinae, respectively. The optimal threshold was 5.62% for Murinae and 3.34% for Arvicolinae. All phylogenetic trees exhibited similar topology and could distinguish 90.32% of surveyed species in Murinae and 82.60% in Arvicolinae with high support values. BLAST analyses yielded similar results with identification success rates of 92.15% and 93.85% for Murinae and Arvicolinae, respectively. BLOG successfully authenticated 100% of detected species except Leopoldamys edwardsi based on the latest taxonomic revision. Our results support the species status of recently recognized Micromys erythrotis, Eothenomys tarquinius and E. hintoni and confirm the important roles of comprehensive taxonomy and accurate morphological identification in DNA barcoding studies. We believe that, when proper analytic methods are applied or combined, DNA barcoding could serve as an accurate and effective species identification approach for Murinae and Arvicolinae based on a proper taxonomic framework.     

Fossil Mice and Rats Show Isotopic Evidence of Niche Partitioning and Change in Dental Ecomorphology Related to Dietary Shift in Late Miocene of Pakistan

Stable carbon isotope analysis in tooth enamel is a well-established approach to infer C₃ and C₄ dietary composition in fossil mammals. The bulk of past work has been conducted on large herbivorous mammals. One important finding is that their dietary habits of fossil large mammals track the late Miocene ecological shift from C₃ forest and woodland to C₄ savannah. However, few studies on carbon isotopes of fossil small mammals exist due to limitations imposed by the size of rodent teeth, and the isotopic ecological and dietary behaviors of small mammals to climate change remain unknown. Here we evaluate the impact of ecological change on small mammals by fine-scale comparisons of carbon isotope ratios (δ¹³C) with dental morphology of murine rodents, spanning 13.8 to ∼2.0 Ma, across the C₃ to C₄ vegetation shift in the Miocene Siwalik sequence of Pakistan. We applied in-situ laser ablation GC-IRMS to lower first molars and measured two grazing indices on upper first molars. Murine rodents yield a distinct, but related, record of past ecological conditions from large herbivorous mammals, reflecting available foods in their much smaller home ranges. In general, larger murine species show more positive δ¹³C values and have higher grazing indices than smaller species inhabiting the same area at any given age. Two clades of murine rodents experienced different rates of morphological change. In the faster-evolving clade, the timing and trend of morphological innovations are closely tied to consumption of C₄ diet during the vegetation shift. This study provides quantitative evidence of linkages among diet, niche partitioning, and dental morphology at a more detailed level than previously possible.     

Boselaphines (Artiodactyla, Ruminantia, Bovidae) from the Middle Siwaliks of Hasnot, Pakistan

In this paper, boselaphine material from several localities in the area of the Hasnot Pakistan, is described, identified, and discussed. Four species that belong to three different genera of the tribe Boselaphini have been found: Selenoportax vexillarius, S. lydekkeri, Pachyportax latidens and Eotragus sp. Eotragus sp. is reported for the first time from the Hasnot and consequently from other Upper Middle Siwalik sediments of Pakistan and equivalent strata of the world, extending the range of the genus from the Lower to the Middle Siwaliks. Reviewing the Siwaliks’ Selenoportax species, S. dhokpathanensis Akhtar and S. tatrotensis Akhtar are synonymized with S. lydekkeri and S. vexillarius, respectively.     

First identification of Decennatherium Crusafont, 1952 (Mammalia,Ruminantia, Pecora) in the Siwaliks of Pakistan

Previously undescribed remains of a new large giraffid have been identified from the late Miocene Siwaliks Hills of the Potwar Plateau in Pakistan. This taxon is very intimately related to the late Miocene giraffid genus Decennatherium, previously only certainly identified in the Iberian Peninsula, and with some possible remains assigned to Decennatherium crusafonti from Aliäbäd (Iran). The new material collected in the Siwaliks Hills shows a high morphological similarity with the Spanish remains of the genus, especially the early Vallesian Decennatherium pachecoi. Two previously undescribed ossicone fragments from the same area are also described and identified as cf. Decennatherium. These findings represent the easternmost occurrence of the genus Decennatherium and show a late Miocene migration of the genus throughout the Iberian Peninsula and Southern Asia.     

Neocometes (Rodentia,Platacanthomyinae) from the early Miocene of Echzell,Germany

The dental material described in this paper represents the largest known sample of molar material of the extinct platacanthomyine rodent Neocometes Schaub and Zapfe. It can be attributed to Neocometes similis Fahlbusch, the stratigraphically oldest and most primitive of the two species recognized in the European Miocene. This rich material provides sufficient samples of all molar positions to evaluate and confirm the morphologic and morphometric characters given for N. similis. The evolutionary stage of the Neocometes population from Echzell is only slightly more derived than the one from the type locality Erkertshofen 2, and supports the biostratigraphic setting of Echzell given by earlier authors. N. similis is the first mammal described in detail from the fossiliferous ash layers of Echzell, a locality situated at the southwestern margin of the Vogelsberg volcanic complex in central Germany.     

Structural Features of Spines in Some Rodents (Rodentia: Myomorpha, Hystricomorpha)

The architectonics of spines and hair was studied in Neacomys spinosus, Tokudaia osimensis, Arvicanthis somalicus, Leopoldamys sabanus, L. edwardsi, Maxomys moi, M. surifer, Niviventer fulvescens, N. confucianus, N. cremoriventer, Acomys cahirinus, A. somalica, Hystrix indica, H. cristata, Atherurus macrourus, Erethizon dorsatum, Proechimys steerei, and Lonchotrix emiliae. The presence of a dorsal longitudinal furrow covered by a modified cuticle is a common structural feature of spines in all studied species except E. dorsatum, H. indica, and H. cristata. The frontal surface of the mosaic (scales located side by side) and terrace cuticle (steps between scales) varies in different species from smooth to rib-folded. A terminology has been proposed to describe the main structures of spine and hair. The adaptive significance of the spine architectonics in rodents is discussed.     

The complete mitochondrial genome of the striped field mouse, Apodemus agrarius (Rodentia, Murinae) from Korea

The striped field mouse, Apodemus agrarius, is the most common rodents in temperate forests of the Korean peninsula. We have determined the complete mitochondrial genome (JN629047) of A. agrarius from Korea. Apodemus agrarius mitogenome is 16,263 bp in length and has a base composition of 33.9% A, 29.9% T, 23.6% C, and 12.5% G. The total length of the 13 protein-coding genes is 11,398 bp long.     

The complete mitochondrial genome of the Korean red-backed vole, Myodes regulus (Rodentia, Murinae) from Korea

We have determined the complete mitochondrial genome (NC_016427) of the Korean red-backed vole, Myodes regulus, which is distributed in South Korea. The total length of the M. regulus mitogenome is 16,379?bp, with a base composition of 33.0% A, 26.7% T, 27.1% C, and 13.2% G. The total length of the 13 protein-coding genes is 11,396?bp long.     

Sciuridae (Rodentia,Mammalia) from the Late Miocene of Venta del Moro (Cabriel Basin,Spain): biostratigraphical,phylogenetic and palaeoecological inferences

Abstract

Fossil squirrels are relatively abundant in Aragonian and Ramblian assemblages, but very scarce in the Late Turolian and Ruscinian of the Iberian Peninsula. Until now, the locality of Venta del Moro has yielded over 4500 micromammal dental remains, but just nine of them are sciurids. In this assemblage, we have identified the taxa Pliopetaurista pliocaenica, Heteroxerus cf. mariatheresae and Atlantoxerus cf. margaritae. This is the first co-occurrence of the genera Pliopetaurista, Heteroxerus and Atlantoxerus in the same locality, being also one of the oldest records of P. pliocaenica, the oldest record of a form that could be related to A. margaritae, and the youngest record of the genus Heteroxerus. In addition, we hypothesize about the phylogeny of Pliopetaurista in the light of recent discoveries. Finally, the presence of the genera Heteroxerus and Atlantoxerus suggests an open environment and relatively dry environmental conditions, while Pliopetaurista is purportedly a flying squirrel, dweller of forested habitats and wet climates. Based on this, we infer an open environment of grassland type, bordered by forested habitats, agreeing with the conditions supposed for Venta del Moro according to its macromammal and floral assemblages.     

The complete mitochondrial genome of the Korean field mouse Apodemus peninsulae (Rodentia, Murinae) from Korea

We have determined the complete mitochondrial genome of a subspecies of the Korean field mouse, Apodemus peninsulae peninsulae, from South Korea. The total length of the A. p. peninsulae genome is 16,268 bp with a base composition of 34.5% A, 30.7% T, 22.6% C, and 12.2% G.     

New species of Hispanomys (Rodentia,Cricetodontinae) from the Upper Miocene of Batallones (Madrid,Spain)

Material of Hispanomys (Rodentia, Cricetodontinae) is described from various localities at Batallones (MN10) (Madrid, Spain). All of it belongs to a single species, which differs from the other known species of the genus and a new taxon, Hispanomys moralesi sp. nov. , is created for it. The samples from the various localities show differences interpreted as being the result of slight age disparities amongst the different sites. Although they were previously thought to be coeval, Batallones 10 is probably older than Batallones 1, which is possibly older than Batallones 3. Hispanomys moralesi sp. nov. is characterized by several morphological features such as the lack of cingula and mesolophs, the presence of well‐developed ectolophs, four‐ or five‐rooted M1, short or absent mesolophids, and reduced and simplified M3. Hispanomys moralesi sp. nov. is a relatively derived species, the evolutionary stage of which is comparable to those of other members of the genus from the Upper Vallesian. © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 160 , 725–747.     

B chromosomes of Korean field mouse Apodemus peninsulae (Rodentia,Murinae) analysed by microdissection and FISH

Organization of B chromosomes in the Korean field mouse Apodemus peninsulae was analyzed. We painted its metaphase chromosomes with whole and partial chromosome paints generated by microdissection and DOP-PCR. The results of the painting indicated that all B chromosomes contained a large amount of repeated DNA sequences. The repeats could be classified in terms of their homology and predominant location. Pericentromeric repeats of B chromosomes were present in many copies in pericentromeric C-blocks of all autosomes and in non-centromeric C-blocks of the sex chromosomes. B arm specific type 1 repeats comprised the main body of the arms of almost all B chromosomes and were present in the arms of A chromosomes as interspersed sequences. B arm-specific type 2 repeats were found at the ends of some B chromosomes that did not undergo compaction at the interphase- metaphase transition and remained uncondensed. On the basis of comparative analysis of localization of B chromosome repeats in the chromosomes of two related species, A. peninsulae and A. agrarius, we suggest a hypothesis of B chromosome origin and evolution in the genus Apodemus.     

Relationship between the Social Structure and Potential Reproductive Success in Muroid Rodents (Rodentia,Myomorpha)

Biology Bulletin - In many systematic groups of mammalian species, the evolution of sociality leads to the formation of large social groups (group-size evolution). In rodents, however, the most...     

Molecular phylogeny of the genus Mus (Rodentia: Murinae) based on mitochondrial and nuclear data

The genus Mus encompasses at least 38 species divided into four subgenera: Mus , Pyromys , Nannomys and Coelomys . The subgenus Mus , which comprises the house mouse and related species, is by far the most extensively studied, although the subgenus Nannomys is the most speciose. Although the relationships within the subgenus Mus are rather well characterized, those between subgenera are still unclear. In the present study, phylogenetic analyses of the whole genus were performed using a larger species sample of Nannomys than in previous studies, and a nuclear gene (IRBP) in addition to mitochondrial data (cytochrome b and 12S rRNA). Members of the Acomyinae and Murinae were used as outgroups. Separate and combined analyses were performed with maximum parsimony, maximum likelihood and Bayesian methods, and divergence times were estimated. The results showed that the monophyly of the genus Mus and of each subgenus was strongly supported by the three genes and the combined analysis. The phylogenies derived from the three genes were on the whole congruent; however, several conflicting topologies were observed such as the relationships between the three Asian species of the subgenus Mus ( caroli , cervicolor and cookii ). Increasing the taxonomic sampling of Nannomys did not satisfactorily improve the resolution of relationships between the four subgenera. In addition, molecular calibrations indicate that the Mus and Nannomys radiation coincided with major environmental changes.  © 2005 The Linnean Society of London, Biological Journal of the Linnean Society , 2005, 84 , 417–427.     

Molecular phylogeny of the African pygmy mice, subgenus Nannomys (Rodentia, Murinae, Mus): implications for chromosomal evolution

Molecular phylogenies based on sequences of mitochondrial cytochrome b and nuclear IRBP genes are assessed on a comprehensive taxonomic sampling of African pygmy mice (subgenus Nannomys of the genus Mus). They represent a taxonomically diversified group of morphologically similar species, and exhibit an important chromosomal diversity, particularly involving sex-autosome translocations, one of the rarest and most deleterious chromosomal changes among mammals. The results show that the species sampled are genetically well differentiated, and that chromosomal rearrangements offer accurate diagnostic characters for discriminating most species. Furthermore, the species carrying different sex-autosome translocations appear monophyletic, suggesting that a genome modification allowing a higher rate of occurrence and/or fixation of such translocations took place, leading to the emergence of this lineage. In addition to taxonomic and biogeographical clarifications, we provide a temporal framework within which patterns of genic and chromosomal evolution are discussed.